LOCUS       NM_029287                698 bp    mRNA    linear   ROD 07-FEB-2025
DEFINITION  Mus musculus CFAP97 domain containing 1 (Cfap97d1), mRNA.
ACCESSION   NM_029287 XM_126493 XM_905691
VERSION     NM_029287.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oura,S., Kazi,S., Savolainen,A., Nozawa,K., Castaneda,J., Yu,Z.,
            Miyata,H., Matzuk,R.M., Hansen,J.N., Wachten,D., Matzuk,M.M. and
            Prunskaite-Hyyrylainen,R.
  TITLE     Cfap97d1 is important for flagellar axoneme maintenance and male
            mouse fertility
  JOURNAL   PLoS Genet 16 (8), e1008954 (2020)
   PUBMED   32785227
  REMARK    GeneRIF: Cfap97d1 is important for flagellar axoneme maintenance
            and male mouse fertility.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 698)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK005669.1 and BB015789.1.
            
            On or before Aug 19, 2009 this sequence version replaced
            XM_905691.2, XM_126493.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK005669.1, BY705855.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-690               AK005669.1         5-694
            691-698             BB015789.1         223-230
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 65.48 cM"
     gene            1..698
                     /gene="Cfap97d1"
                     /gene_synonym="1700006E09Rik"
                     /note="CFAP97 domain containing 1"
                     /db_xref="GeneID:75437"
                     /db_xref="MGI:MGI:1922687"
     exon            1..182
                     /gene="Cfap97d1"
                     /gene_synonym="1700006E09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             59..553
                     /gene="Cfap97d1"
                     /gene_synonym="1700006E09Rik"
                     /note="uncharacterized protein C17orf105 homolog; CFAP97
                     domain-containing protein 1"
                     /codon_start=1
                     /product="sperm axonemal maintenance protein CFAP97D1"
                     /protein_id="NP_083563.1"
                     /db_xref="CCDS:CCDS48938.1"
                     /db_xref="GeneID:75437"
                     /db_xref="MGI:MGI:1922687"
                     /translation="MNNSLDYLAYPVIVSNHRQSTTFRKKLDFGHYILHKNRVQIVKP
                     AVDTKPPMAHTHYILKLSKIQGEQKRIDKIEYENRQLCQKIANAYRGPAKVDCWNEYL
                     SKSLNRESRNRELVRITMENQGILRRLSDRKPNYDRRSSEMDWQNSRRYIRNTTRYLL
                     FQED"
     exon            183..253
                     /gene="Cfap97d1"
                     /gene_synonym="1700006E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            254..372
                     /gene="Cfap97d1"
                     /gene_synonym="1700006E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            373..496
                     /gene="Cfap97d1"
                     /gene_synonym="1700006E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            497..553
                     /gene="Cfap97d1"
                     /gene_synonym="1700006E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            554..698
                     /gene="Cfap97d1"
                     /gene_synonym="1700006E09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      659..664
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cfap97d1"
                     /gene_synonym="1700006E09Rik"
                     /note="hexamer: AATAAA"
     polyA_site      693
                     /gene="Cfap97d1"
                     /gene_synonym="1700006E09Rik"
                     /note="major polyA site"
ORIGIN      
        1 aagtgcctca cagagaagcc aaggtgtctc atttctgaag ctagactagg aggagaaaat
       61 gaacaattcc ttggattatt tggcctaccc tgtaatcgtt tctaatcaca ggcaaagcac
      121 aacctttagg aagaaactgg actttggcca ctacatattg cacaaaaata gagtacaaat
      181 agtgaagcct gccgtcgata ccaaacctcc aatggcacac acacattaca ttttaaaatt
      241 gagcaaaatc cagggtgaac aaaagagaat cgacaaaatt gaatatgaaa atagacaatt
      301 gtgtcagaaa attgcgaatg cctatcgagg ccctgccaag gtggactgct ggaatgagta
      361 tctttcaaaa agcttaaaca gagaatcaag gaaccgagag ctagtaagaa tcaccatgga
      421 aaaccagggc atcctaagga ggttgagtga tcgcaaaccc aactatgacc gcaggtcatc
      481 ggagatggac tggcagaatt caaggcggta tatcagaaac acaacaagat atcttctctt
      541 ccaagaagac taggttactc accatggaaa agacaccgag aagaccctaa gatctcttgg
      601 ctgctcagga tcttaagaca tcgcagaaat ggctgcattc tctgtcttag gatgtcacaa
      661 taaagcttgg cacaaaaaaa cagggcaagc aaatggaa
//
