LOCUS       NM_001033148            2740 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus cilia and flagella associated protein 96 (Cfap96),
            transcript variant 1, mRNA.
ACCESSION   NM_001033148 XM_134156
VERSION     NM_001033148.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2740)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2740)
  AUTHORS   Skarnes,W.C., Rosen,B., West,A.P., Koutsourakis,M., Bushell,W.,
            Iyer,V., Mujica,A.O., Thomas,M., Harrow,J., Cox,T., Jackson,D.,
            Severin,J., Biggs,P., Fu,J., Nefedov,M., de Jong,P.J., Stewart,A.F.
            and Bradley,A.
  TITLE     A conditional knockout resource for the genome-wide study of mouse
            gene function
  JOURNAL   Nature 474 (7351), 337-342 (2011)
   PUBMED   21677750
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC114558.18.
            
            On May 7, 2009 this sequence version replaced NM_001033148.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK156041.1, SRR7345562.4477440.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1749              AC114558.18        194753-196501
            1750-1969           AC114558.18        199432-199651
            1970-2107           AC114558.18        201841-201978
            2108-2183           AC114558.18        202074-202149
            2184-2363           AC114558.18        207572-207751
            2364-2533           AC114558.18        213439-213608
            2534-2740           AC114558.18        216193-216399
FEATURES             Location/Qualifiers
     source          1..2740
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 25.94 cM"
     gene            1..2740
                     /gene="Cfap96"
                     /gene_synonym="1700029J07Rik"
                     /note="cilia and flagella associated protein 96"
                     /db_xref="GeneID:69479"
                     /db_xref="MGI:MGI:1916729"
     exon            1..1749
                     /gene="Cfap96"
                     /gene_synonym="1700029J07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1750..1969
                     /gene="Cfap96"
                     /gene_synonym="1700029J07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1970..2107
                     /gene="Cfap96"
                     /gene_synonym="1700029J07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2108..2183
                     /gene="Cfap96"
                     /gene_synonym="1700029J07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2184..2363
                     /gene="Cfap96"
                     /gene_synonym="1700029J07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2364..2533
                     /gene="Cfap96"
                     /gene_synonym="1700029J07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2534..2740
                     /gene="Cfap96"
                     /gene_synonym="1700029J07Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgcgccagcg gcagcttgcg gaactgtgcg gcgcgcgcct ctgctgctgc gctctaggct
       61 ggagccccgg ccaagcgcgt ggcctcgagc tcttcgggct ctgctgtgga gtgatccccg
      121 accggagcag ggtccatctg attctggttg tgggattagg tgtcttttgg agaggtgact
      181 cggcctcgca gacatgggtt ttccttagct acctgcctac ttcaagctac ctttccttag
      241 agggaataac ttagacaatc agtccattta ttttctgcag tttctccctt ttagccaaac
      301 tttttttttt tttttcctgg cgtagaaaag aatttattga gtaaattgca aggatgcagt
      361 ggacagggct gtaacagagg aaccttctta gccaaacttt ttgaagggaa cttgccatat
      421 tctacttggg tagaatccca cgattttcgt gtctacgtga ttataaacca aaatttatgc
      481 cttttaaagt ctgttttcct acttctacct gaccagaagg agagggttgc aaaaaacatt
      541 gcgtaaatgt gtgaatgaat actttgtaag ttttacttaa agagtttatt gtagggacaa
      601 agttgaaggc attggccgca agcgctgggg cgacaatggt aaaaaactaa aggggttttg
      661 tcgttcaagc cgctccggag gttagggcag aggttccctg attccaggag ttccattcca
      721 gtctgggcag cgttgcctca agaatgtggt gaaggagatt gaaactcagt tcatggttcc
      781 tagctgtcag ttcactgggg aaaataaagg gtgccaaacc acggatataa gatgactgtt
      841 aatgaagctt gggaaggtgt taaagcggag aatctccagg agaagagacc aactccatga
      901 ctgtccaatt aaagcaagct gtgtgttggg gtgtgcccgt actagcctgc tggctgtctc
      961 actctgagag caccccttgc ggcagcctca ttaggtcctt tttacacgag agagagagag
     1021 agagagagag agagagagag agagagagag agagagagag agagagatcg ttcaccggac
     1081 tgagagagtt ggctgttata cattgtaaaa acaaaaccaa agaacaatgt gaaagggaag
     1141 gaacaaggtc atgttcctac atcatgtgaa tcgggtagca agtttagtgt tggttgaaag
     1201 acattttgca gtttacatcc tatctaagaa acagggatca gtccttaatt acaaggagaa
     1261 atctcaactt ggaagcactt aacgcaggac aaacaggaac gtattcttta actacaaata
     1321 gaaaccgtag cctgtacagg atgaacagga gcttagtctt aactgtctta actggaaaca
     1381 aaaactttaa cctgcaaagt atattgttcc tagtttggtc tcacaaaagc tatgcacaag
     1441 cctatctgat ggggcttgtg cgggtacgta aaagaagtca accaaccaac caatccagag
     1501 acttaaaata atggcaaata aatagtttga tatttaataa tcattctttt ctttaaaatt
     1561 aatttcctgt agttttcagt gtaaagtagg attttgctgc aaaagaagat ctaagaacct
     1621 ttgtgaagtt accaccccaa ggagcaatca tgccgataga aggtgggaaa acagatatgg
     1681 agaggattgg cctcttcagt gagatggaat acatcactgt gggcgacaaa tatgtgtcac
     1741 catttaatcg accctttaat gaggctgcaa gcaaaaatag acagatccta ccggggggaa
     1801 ccaaagaaat gtccagtctc caggcaggat actttgattc ccagtttgca aggatttttg
     1861 aaggggaagg ctacgtgaat ttgaatcaag tgaggagacg gtatatgctg gcagaatcca
     1921 aaaagaacct aggcaaagct ttcatcccta gtagcggaga gaaaaagcca agtggattag
     1981 gaagctatta tggaacaatt ggtggtcctg tcccattctt cagtgctcag ataaaaccca
     2041 aggacaagta tcagccaccg gggaagaatt tatataccaa cccaggaaaa aaaggaactg
     2101 gatatggcta tgccaatgtt accataggca agcagctttc acattcttct gacttatatg
     2161 acgcagcgag acagagttat aagaaagaaa gtgaagagca ccatcgacta atcaaagggt
     2221 cacctttcaa gctgcatctt cacccgaagg actattttga tactaaccct tactttttag
     2281 agcaccattt acctcccctt aggagagaag aaaagaagga agtgtctttc aagcccttta
     2341 agccctcctc tcctggtaaa aaggctggtg gaatgaaagc aggggcattt gacccttacc
     2401 cagcacactc agcggaccct tacgtggtca aagtggaaaa ggcgattcct tcgaaaggtg
     2461 aaagggtttt ccacccaccc aatggaccaa aaagcagacc cgttgaaagt ataatggcgc
     2521 tgaatgtcaa aagggcatta aacgtgaaga actacaagaa tgcctcctca accactctgg
     2581 gaaagcagtt agtcttctag atcctcttgg tggctcagag agtacacaac gttctggaac
     2641 aaatggctcc atggcgggta aaggaaattt aaacacgagg ctcaactctg atgcccttcc
     2701 tgatcgtaac gctgtttaat aaacactgtt gcctaatgac
//
