LOCUS       NM_001384219            3627 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus cilia and flagella associated protein 92 (Cfap92),
            transcript variant 1, mRNA.
ACCESSION   NM_001384219
VERSION     NM_001384219.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3627)
  AUTHORS   Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM,
            Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming
            LG.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
REFERENCE   2  (bases 1 to 3627)
  AUTHORS   van der Zwaag B, Burbach JP, Scharfe C, Oefner PJ, Brunner HG,
            Padberg GW and van Bokhoven H.
  TITLE     Identifying new candidate genes for hereditary facial paresis on
            chromosome 3q21-q22 by RNA in situ hybridization in mouse
  JOURNAL   Genomics 86 (1), 55-67 (2005)
   PUBMED   15953540
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC158626.6.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMN00849374, SAMN00849375
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-54                AC158626.6         140703-140756
            55-323              AC158626.6         141344-141612
            324-511             AC158626.6         144475-144662
            512-716             AC158626.6         145369-145573
            717-860             AC158626.6         149184-149327
            861-933             AC158626.6         150076-150148
            934-1055            AC158626.6         151183-151304
            1056-1208           AC158626.6         156056-156208
            1209-1393           AC158626.6         162967-163151
            1394-2298           AC158626.6         164491-165395
            2299-2493           AC158626.6         168530-168724
            2494-2791           AC158626.6         172605-172902
            2792-2956           AC158626.6         182182-182346
            2957-3163           AC158626.6         183179-183385
            3164-3320           AC158626.6         183467-183623
            3321-3627           AC158626.6         187554-187860
FEATURES             Location/Qualifiers
     source          1..3627
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 38.75 cM"
     gene            1..3627
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /note="cilia and flagella associated protein 92"
                     /db_xref="GeneID:613264"
                     /db_xref="MGI:MGI:3586838"
     exon            1..54
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            55..323
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             77..3553
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /codon_start=1
                     /product="uncharacterized protein CFAP92"
                     /protein_id="NP_001371148.1"
                     /db_xref="GeneID:613264"
                     /db_xref="MGI:MGI:3586838"
                     /translation="MSLQAWDWEGEEGSSMGPHSVASESEMEENLKSRIPAHDWDSED
                     QFSSSLHSSEGPACISNSDVPQIVPCRFEISLAFPVLIGNKGKPPNVPDKKKSAKTET
                     RTGKARQFYHIEYFFLPDDIEPKIVDIVVFPNVAKVFLESGTKTVKPWRDDDKVWVSW
                     SQTFHVNVTKELLKKLNFHKITLRLWDTKDRVSKRARYQRVKASAYSEDLESLEEVKH
                     LVLSHKKLSLISIGKTNPISEELKEENLPGDQEKSEKHLKSPQEPEAPSKNDEECEKL
                     LKMEESPLSRRTISKTPISLSGATMMEIKELIEKPSLSSLTNMLEKQKSQLKGKDTEV
                     KKKNPKKVKRYQAEEEGDQKPETPAAWKQSIFSIQLPIMPLLAGWRTVICRGSEKSAN
                     ILDCFLTLKTEVPIMTEQQKQDLNPLTIKIRCVSCLPIQPVSIHDLERLCSPVYCRYQ
                     FHKTPVHETKREPHGTHVFFRDINVVFLGAMNPSDVREYLEGPPMVVEVHDRDRKLEE
                     YSRKPALFGEDLMDSYFNLQAFVSHRDTETNPYESQNKIWDPYGIARVSFADLLLGYK
                     YLNLIVPIHNCEPKSPNWSQDSRNRRTMGVQVPTDVLQHSSIPKGNYLEANSLLKLRV
                     DIAVPLSGWSRAPQLDLMGTHFGRIIFVFHAKKLSLLQSLLQDITMINAKALELDCYP
                     LQNIQQILSAFKVRVKIQEQQDLDVLTGFHLLDGKIHLFILEGLADRGLRQLWESYQS
                     SVTASNRAACKVLYDSRLLFCHRLYADLETILYHVHLFRPVSVLLRYPALYVRGAVSR
                     MAFKALSRIHDICQSSTRLKEVVMRDLLPSSSMIKELSQEFGIPISQEDLTDGKLLTA
                     LPQPDTSNEDIQRRTSTLPLEIQVHQEKYLQWRNDMLLKNQVHRDSIVQKNITEAYQF
                     TKKSQKPIRKVIRIAIPENKTVHNYSAQTMNSTELAKKQMLKEMAKEPRKRFTYSQNY
                     LSAMVDFQDPKEEEKKAQKKSRQAWLTAGGFQVWGLQSSTGSSQQDLKLPPIRELNEE
                     WQENALFTNVLKPVLDRDRWSWSQRHLDFDLYKKPPLYFKLPRLPSPKRASGRRRKAN
                     IGSSGRRWRSRVASKPLSSPESSSTHPQDLFSLSDHHLVLKTLSRLTSASRGSSLGLY
                     HPNPTFHSRWFH"
     exon            324..511
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            512..716
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            717..860
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            861..933
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            934..1055
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1056..1208
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1209..1393
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1394..2298
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2299..2493
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2494..2791
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2792..2956
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2957..3163
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3164..3320
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3321..3627
                     /gene="Cfap92"
                     /gene_synonym="1810020O05Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtggctgta actgtgcagc aggtgcagga gccaaccggt gtgcctactc acaggaccat
       61 tcgagtgctg tgcaccatgt ccctgcaggc ctgggattgg gagggagagg aagggtcaag
      121 catggggcct cactccgtgg ccagcgaaag cgagatggag gagaacctga aatccaggat
      181 cccagcccat gattgggact ctgaggacca gttcagcagc agcctgcatt cctcagaggg
      241 acctgcctgc atctctaact ctgatgtgcc ccagattgtc ccctgcagat ttgagatctc
      301 actggccttc cccgtgctga taggtaataa gggaaaaccc ccaaatgtac ctgataaaaa
      361 gaaatctgct aaaacagaaa cccggactgg aaaggctcgt caattctacc acattgagta
      421 ttttttcctg cctgatgaca tagaacccaa aatagttgat atcgtggtgt ttcctaatgt
      481 agccaaagtg tttctggagt cgggaacaaa gactgtaaag ccatggagag atgacgacaa
      541 agtctgggta tcatggagcc aaacttttca tgtcaacgtg acaaaggaat tgttaaagaa
      601 actgaacttc cacaaaatca ctttgaggct ctgggacacc aaagacagag tgtcaaaaag
      661 ggccaggtac cagcgggtga aagcctcagc ctattcggaa gacttggagt ctcttgagga
      721 agtgaaacat ttggttttga gtcataaaaa gttgtcttta atttccattg gtaaaaccaa
      781 ccctatctcc gaagaattga aagaggagaa cctaccaggt gaccaagaaa agtcagaaaa
      841 acacttgaag tctccacaag agcctgaagc cccttctaag aatgacgaag agtgtgagaa
      901 gttactgaag atggaggagt ctcctttgtc tagacggacc atttcaaaga cacccatttc
      961 tctgagtgga gcaaccatga tggagatcaa agagctcatt gagaaaccat cgttgagcag
     1021 cttaacaaac atgctggaga aacaaaagtc tcagcttaaa gggaaagata cagaagtgaa
     1081 gaagaaaaac ccaaagaaag tgaagaggta ccaggcagaa gaagaagggg accagaagcc
     1141 ggaaacccct gccgcctgga agcagagcat cttctccatc cagttaccca tcatgccgct
     1201 ccttgccggc tggcgaacgg tcatctgccg tggcagtgag aagtcggcca acattttaga
     1261 ttgctttttg actttaaaaa cagaagttcc tattatgact gaacagcaaa aacaagacct
     1321 gaaccccctg accataaaga tcaggtgtgt ctcttgtctt ccgatccagc ctgtatccat
     1381 tcatgatctg gagaggctgt gcagccctgt gtactgcaga taccagttcc acaagactcc
     1441 agttcacgag accaagagag agccccatgg gactcatgta ttttttcgag atatcaatgt
     1501 cgtcttcctt ggggccatga accctagcga cgtgagggaa tacctggagg ggccccccat
     1561 ggtagttgaa gtccatgaca gggatcggaa gttagaagag tattcccgga agcctgccct
     1621 gtttggagag gacctgatgg attcatactt caatctccag gctttcgtct ctcacagaga
     1681 cacagagacg aacccctatg agtcgcagaa taagatttgg gatccttatg gcattgcccg
     1741 ggtcagtttt gctgacctcc tccttggtta taagtacttg aacctgattg tccccatcca
     1801 caactgtgag ccaaagtccc ccaactggag ccaggatagc aggaacagaa ggactatggg
     1861 agtccaagtg cccacagatg tcctccagca cagctcaatt cccaaaggca actacctgga
     1921 ggccaactct ttactcaagc tccgagtgga cattgcagtg cccctgagtg gttggtccag
     1981 agctccccag ttggacctaa tgggtaccca ttttggccgc atcatttttg tgttccacgc
     2041 caagaaactg tccctcctac agagcctgct gcaggacatc actatgatca atgctaaagc
     2101 cctggaactg gactgttatc ccctccagaa catccagcaa atcctgtcgg ccttcaaggt
     2161 gcgcgtgaag atccaagagc agcaggacct ggatgtgctc acgggcttcc atctgctgga
     2221 tggaaagatc catcttttta ttctagaagg cttggcagac cgtggattga ggcagctgtg
     2281 ggagagttac cagagcagtg ttactgcctc caaccgtgca gcttgcaagg tgctctatga
     2341 ctccaggttg ctcttctgcc accgcctgta cgctgacctg gagaccatcc tgtaccatgt
     2401 acatttgttc aggcctgtgt cagtgctcct gcggtaccct gcactctatg ttcgtggggc
     2461 tgtgtcacgt atggccttta aggcactgtc caggatccat gacatctgcc aaagtagtac
     2521 caggctcaag gaggtggtta tgagagatct gctgccttcc tcctccatga ttaaagaact
     2581 gagccaagag tttgggatcc ccatttctca ggaagatctc acagatggaa agctattgac
     2641 cgcattaccc cagcctgata ccagtaatga ggatatccaa cgtcggactt ctactcttcc
     2701 actggagata caagtccacc aggagaagta cctgcagtgg cggaacgaca tgctgctgaa
     2761 gaaccaggtc cacagggata gcattgtcca gaaaaatatc acagaagcct accagttcac
     2821 caagaagtct caaaagccaa taaggaaagt cattagaatt gccattcctg agaacaaaac
     2881 tgtccacaac tacagcgccc agaccatgaa ttccacagag cttgctaaga agcagatgct
     2941 taaagagatg gccaaggagc caagaaagag attcacgtat tcacagaatt acctctcagc
     3001 tatggtggat tttcaggacc caaaggaaga ggagaagaaa gcccagaaga agtcccgcca
     3061 ggcctggctc acagccggtg ggttccaagt atggggtctt cagagcagca ctggaagcag
     3121 ccagcaggat cttaaactgc cacccatcag agagctaaat gaggagtggc aggaaaacgc
     3181 actgtttact aatgtgctga agcctgtgtt ggatcgggat aggtggagct ggagccagcg
     3241 ccacctggat tttgacctgt ataagaagcc accactctac tttaagttgc ctcgtcttcc
     3301 atctccaaag cgtgcatctg gtaggaggcg aaaggcaaac attgggtctt ccggacggcg
     3361 ttggcgcagt cgagttgcat caaagccact tagttcccct gaaagttctt ctacgcaccc
     3421 tcaagactta ttctctctta gtgaccatca tctggtacta aagactctgt ctcgcctaac
     3481 ctctgcatct cgtggatctt cactgggact ataccaccca aatcccacct tccacagccg
     3541 ttggtttcat taaaatgtag tataaggaag gggccattct cagtacccat aaccctgtta
     3601 caaatacaca ctggttccaa gagcaaa
//
