LOCUS       NM_027035               1808 bp    mRNA    linear   ROD 07-OCT-2024
DEFINITION  Mus musculus cilia and flagella associated protein 90 (Cfap90),
            mRNA.
ACCESSION   NM_027035 XM_127414 XM_906587
VERSION     NM_027035.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Suzuki,A., Yabuta,N., Shimada,K., Mashiko,D., Tokuhiro,K.,
            Oyama,Y., Miyata,H., Garcia,T.X., Matzuk,M.M. and Ikawa,M.
  TITLE     Individual disruption of 12 testis-enriched genes via the
            CRISPR/Cas9 system does not affect the fertility of male mice
  JOURNAL   J Reprod Immunol 163, 104252 (2024)
   PUBMED   38697008
REFERENCE   2  (bases 1 to 1808)
  AUTHORS   Zhou,L., Liu,H., Liu,S., Yang,X., Dong,Y., Pan,Y., Xiao,Z.,
            Zheng,B., Sun,Y., Huang,P., Zhang,X., Hu,J., Sun,R., Feng,S.,
            Zhu,Y., Liu,M., Gui,M. and Wu,J.
  TITLE     Structures of sperm flagellar doublet microtubules expand the
            genetic spectrum of male infertility
  JOURNAL   Cell 186 (13), 2897-2910 (2023)
   PUBMED   37295417
REFERENCE   3  (bases 1 to 1808)
  AUTHORS   McClintock,T.S., Glasser,C.E., Bose,S.C. and Bergman,D.A.
  TITLE     Tissue expression patterns identify mouse cilia genes
  JOURNAL   Physiol Genomics 32 (2), 198-206 (2008)
   PUBMED   17971504
  REMARK    GeneRIF: 1700001L19Rik is most abundantly expressed in tissues rich
            in highly ciliated cells, such as olfactory sensory neurons, and is
            predicted to be important to cilia.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK138387.1.
            
            On or before Sep 7, 2008 this sequence version replaced
            XM_906587.3, XM_127414.8.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK138387.1, CA494570.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1808              AK138387.1         2-1809
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 35.55 cM"
     gene            1..1808
                     /gene="Cfap90"
                     /gene_synonym="1700001L19Rik"
                     /note="cilia and flagella associated protein 90"
                     /db_xref="GeneID:69315"
                     /db_xref="MGI:MGI:1916565"
     exon            1..289
                     /gene="Cfap90"
                     /gene_synonym="1700001L19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..586
                     /gene="Cfap90"
                     /gene_synonym="1700001L19Rik"
                     /note="uncharacterized protein C5orf49 homolog; Y
                     regulated sperm protein"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 90"
                     /protein_id="NP_081311.1"
                     /db_xref="CCDS:CCDS49306.1"
                     /db_xref="GeneID:69315"
                     /db_xref="MGI:MGI:1916565"
                     /translation="MEELAKKERRAMDPGGLKKEGKVEEEAGKEEGREEEGGEEEEVT
                     SETLRGKPRPLPISALPAFSYIPPRHQGPKERSYFSREGQTGIVSLYDCVFKRRLDYN
                     QKLHRDDREHAKNLGLHINEEEQERTVPVLMSSVYGKRINQPIEPLNRDYGHVSHVKT
                     DFYRKNEIPSIKGPGFGHINPA"
     exon            290..406
                     /gene="Cfap90"
                     /gene_synonym="1700001L19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            407..1808
                     /gene="Cfap90"
                     /gene_synonym="1700001L19Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      841..846
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cfap90"
                     /gene_synonym="1700001L19Rik"
                     /note="hexamer: AATAAA"
     polyA_site      863
                     /gene="Cfap90"
                     /gene_synonym="1700001L19Rik"
                     /note="major polyA site"
     regulatory      1788..1793
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cfap90"
                     /gene_synonym="1700001L19Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1805
                     /gene="Cfap90"
                     /gene_synonym="1700001L19Rik"
ORIGIN      
        1 gcagacgctt ggagggacgc agaagccacc taacctgatg gaggaactgg ccaagaaaga
       61 gcggagggcg atggaccccg gtggcttaaa gaaggaggga aaggtggaag aggaggctgg
      121 aaaagaagag ggaagagagg aggagggggg agaggaggag gaagtcacct ccgaaaccct
      181 gcgtggcaaa ccccgacctc tgcccatctc agcactacca gctttcagct acatcccacc
      241 aaggcaccag ggccccaagg agcgcagcta cttcagtcgc gagggccaga cagggattgt
      301 ctccctctat gactgtgttt ttaagaggag actagattat aaccagaaat tacaccgaga
      361 tgacagagaa catgcaaaga acctggggct ccatattaat gaggaggaac aagaaaggac
      421 tgtgccagtg ctgatgtcct ctgtctatgg gaaacgcatc aatcagccca ttgagcccct
      481 aaacagagac tatggccatg tgagccacgt gaagaccgac ttctacagga agaacgagat
      541 ccccagcatc aaggggcccg gctttgggca catcaatcca gcctgaagaa gtcgtgtggt
      601 ttctagggca ctctgaggta ccctatcagc aagtgatgta gtatacgaac cattttcctg
      661 ttcatgtcac ctgtagctgt aagaatgttc tttgactgca ggaggataag cacgtgcata
      721 tctaaggtgg tcctggctca gaacctggaa aagcaccttt ccttatgttg aaagctttag
      781 ggtaaggatt ttcactggac ttatttaaaa tgacactgac tgattcattc tgagaccctg
      841 aataaaagaa aagcttgcct cccgttggta gcagctgtgt ttgttttgtg ggctggctct
      901 tcactttgca aggatttgtt ggggaagggg tcacaggaga aacgtgccgg tccttctccc
      961 tgcccacaat gcaaacaacc ccttttctgt ttctctgaga ggaacaaaaa tggctctcaa
     1021 catgactgag cactttgttt tcttgaggtc atagataaac tgaattttga acaatggagc
     1081 attaaagccc cctgtacatc catactgcca cccctccagg gagaatgtgt tacagattca
     1141 gggcgcaggc tggactctgg gaaaagtctg cctgttacgt tctctctctg tgatctgatg
     1201 ttgtgtcatc tttaggtgaa atttctaatc agaatactgc cagagtacag ccatgctcag
     1261 ggttcacagc cctgagcact gaaactgtcc ttacccttgt tattcttcac acagaggttt
     1321 gaacccagga ccttgcacac tgtgcccctg agatctatct gcagcccatg gctgtcactt
     1381 tggacagcag tttcctcttc tggaagcagc tgattttaac ccaggttgga agtatttatt
     1441 ttgcaagaga atctgacata cactcaagca ctaagatata tttttaatga atgtattttt
     1501 ggaagaaagc atctctcatc tactgcgatt gaatttccca gagctgagca gttaatgggc
     1561 aggtgatgca attaattttg gtgctcaacc actggtttta ttgttttgaa tctgcaagat
     1621 ggtttcatga tccaaaattg ctggccattt caaggatgag taactcctaa atacttatat
     1681 tccgaatttt ccagtgttgt tgctcttttt ccccaaaata aatagtagta tattgtgagt
     1741 tgctcttggg cacattaaac tatacttgta ataatataaa aaagaaaatt aaatggattt
     1801 ctgttcgc
//
