LOCUS       NM_001369121            3996 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus cilia and flagella associated protein 61 (Cfap61),
            transcript variant 1, mRNA.
ACCESSION   NM_001369121
VERSION     NM_001369121.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3996)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3996)
  AUTHORS   Hu,T., Meng,L., Tan,C., Luo,C., He,W.B., Tu,C., Zhang,H., Du,J.,
            Nie,H., Lu,G.X., Lin,G. and Tan,Y.Q.
  TITLE     Biallelic CFAP61 variants cause male infertility in humans and mice
            with severe oligoasthenoteratozoospermia
  JOURNAL   J Med Genet 60 (2), 144-153 (2023)
   PUBMED   35387802
  REMARK    GeneRIF: Biallelic CFAP61 variants cause male infertility in humans
            and mice with severe oligoasthenoteratozoospermia.
REFERENCE   3  (bases 1 to 3996)
  AUTHORS   Liu,S., Zhang,J., Kherraf,Z.E., Sun,S., Zhang,X., Cazin,C.,
            Coutton,C., Zouari,R., Zhao,S., Hu,F., Fourati Ben Mustapha,S.,
            Arnoult,C., Ray,P.F. and Liu,M.
  TITLE     CFAP61 is required for sperm flagellum formation and male fertility
            in human and mouse
  JOURNAL   Development 148 (23) (2021)
   PUBMED   34792097
  REMARK    GeneRIF: CFAP61 is required for sperm flagellum formation and male
            fertility in human and mouse.
REFERENCE   4  (bases 1 to 3996)
  AUTHORS   Huang,T., Yin,Y., Liu,C., Li,M., Yu,X., Wang,X., Zhang,H.,
            Muhammad,T., Gao,F., Li,W., Chen,Z.J., Liu,H. and Ma,J.
  TITLE     Absence of murine CFAP61 causes male infertility due to multiple
            morphological abnormalities of the flagella
  JOURNAL   Sci Bull (Beijing) 65 (10), 854-864 (2020)
   PUBMED   36659204
REFERENCE   5  (bases 1 to 3996)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 3996)
  AUTHORS   Chiu,S., Kim,K., Haus,K.A., Espinal,G.M., Millon,L.V. and
            Warden,C.H.
  TITLE     Identification of positional candidate genes for body weight and
            adiposity in subcongenic mice
  JOURNAL   Physiol Genomics 31 (1), 75-85 (2007)
   PUBMED   17536020
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL672100.7, AL732467.8 and AL935056.18.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384,
                              SAMN00849387 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-57                AL672100.7         176776-176832
            58-209              AL672100.7         181832-181983
            210-360             AL672100.7         189038-189188
            361-437             AL672100.7         191911-191987
            438-505             AL672100.7         192751-192818
            506-632             AL672100.7         193050-193176
            633-765             AL732467.8         10869-11001
            766-925             AL732467.8         21043-21202
            926-990             AL732467.8         49426-49490
            991-1074            AL732467.8         56439-56522
            1075-1250           AL732467.8         59649-59824
            1251-1290           AL732467.8         61871-61910
            1291-1430           AL732467.8         64889-65028
            1431-1557           AL732467.8         82758-82884
            1558-1635           AL732467.8         84388-84465
            1636-1842           AL732467.8         90024-90230
            1843-1977           AL732467.8         92984-93118
            1978-2105           AL732467.8         124832-124959
            2106-2204           AL732467.8         143195-143293
            2205-2373           AL732467.8         149524-149692
            2374-2548           AL732467.8         157478-157652
            2549-2841           AL732467.8         176525-176817
            2842-3169           AL732467.8         190584-190911
            3170-3261           AL732467.8         192955-193046
            3262-3467           AL732467.8         201283-201488
            3468-3558           AL935056.18        21233-21323
            3559-3996           AL935056.18        35118-35555
FEATURES             Location/Qualifiers
     source          1..3996
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 71.28 cM"
     gene            1..3996
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /note="cilia and flagella associated protein 61"
                     /db_xref="GeneID:78774"
                     /db_xref="MGI:MGI:1926024"
     exon            1..57
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            58..209
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            210..360
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            361..437
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            438..505
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            506..632
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            633..765
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            766..925
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            926..990
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1074
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1075..1250
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1251..1290
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1291..1430
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1431..1557
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1558..1635
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1636..1842
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1843..1977
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1978..2105
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2106..2204
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2205..2373
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2374..2548
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2549..2841
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2842..3169
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3170..3261
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3262..3467
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3468..3558
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3559..3996
                     /gene="Cfap61"
                     /gene_synonym="4930529M08Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcaactgtg tgcgcgtcct ctgtggagac ttgcggcttg ctggagctgc gggtgaggag
       61 aggaaaatgt ccatcctcac gtcccccaga gggaaggtcg aggtggtaca ctgccgaaga
      121 acagagtccc aggacatctt ctgtatcaaa aacctcgtta gaaagtttac tcagaagctg
      181 tttgggaggc tcaacataat ctatttgcta gaaaaggcaa acctcgctgt tactgtctgc
      241 aatgacaagg aggagatcat ggctcactcc atcttcttgg actatcccaa ctggaacgtc
      301 gccaagcagg acaactggat cccattgttc agggaactcg acaaagaaat cccatgcaca
      361 cctctgaaca cgctgtttat gcacttcttt gtggctgtgg atgaatatgc cactggctgc
      421 ctcaaagaaa tcatccggac tgtgttcaag gcggtgccag aactgtactt catattcctt
      481 atagtgccaa catatttgag cctaggctca actctgataa ctgtgtttga ccaagtgggg
      541 aacattccat gtctgaacta taatgaagac tttgcagtgc acatatgtca caggcacaat
      601 cactaccctc agctgcatat tcgcaaagcc agggtagaag accatgatga tctcatgcca
      661 atatttatgc actacgacaa cactctaaag gaaatttatg gtgaatactt cttggccgaa
      721 ctgatcgagg cccaagataa agaccatcat gctgtggtgt gtgaggtgga aggcaaggct
      781 gtcgggttca tgagcgtgtg caccagcgtg aacttgcccc tgctacacga atgctttgac
      841 ctgggccctt tccatggatt ctgcacccca catcctgatg atattctgaa accatcgcgt
      901 gaaccaagtc ttgaagaagg tgaagatgct gaaagccaag gttctcccaa ggtagtggag
      961 gagcaagaaa tggccccaga aataacccag gagaaagaga ccgaaacatc ggcttcatgt
     1021 gaggaagccc tgccaacagt cttaggtcta gtctctgagg aaaggcttaa gcaggacatg
     1081 gaaaagaatc taagcatcct ttccttagtt gacgaagaag atgttgccag cagcctgagc
     1141 tcctccctcc tgttgtctgt ggaatcctcc cacttccgcc ccctctacct gggagaccct
     1201 attgcgtttt gtattcagct cttttgtatt gatgagagat acgaggcaag gtcgctggat
     1261 ttcatgagtt ttgttttcag tctttttcct ggtaagaact tctgcttgat atctgtgccc
     1321 catctcacgc ctgagtttgt cctcatccag aactttgtga aggtcgtccc attcaacaat
     1381 tgcaccctgg accacgacct ctacgtgttc catcgggctg ggctgctcag gtccattacg
     1441 ataagattag ccaagtttct ggatactgct ggtgttgaaa agcttgtcag caccctcctg
     1501 ctgagtacaa agatactgga tgatttagcc cagtacaacg aggctggcag agaccctgat
     1561 ggaacagcac tgcaggtgtt cgtagcggaa gttgcagatc aaatagttgg cattgcagtg
     1621 atcagaaaag aaatggatat agagtacata cgatctcatt ataacattga ggacttcatc
     1681 tacttcagcc accaccagca ggaagaacat gggcgcttga accattttgc cctgaacccc
     1741 attttccgac actacaccaa gtttttccta aaggagatcc tccgcttagg ctataagtca
     1801 tgtctctact atcctgtgta cccccagacc cgggaaggca agctccagag ctcttactcc
     1861 cactccctga catctgccct tcattacttg gttcccgtgc gaccacgacg acagattgtc
     1921 tatcctctgg aaaagcttgg cataaacgct ccatcaaagg aggtctccaa ggatcaggtg
     1981 agtttcgcct tgaaccacac caacagaaaa ctaacattag aaccgaaagt cactgtcaat
     2041 gccagaattg ttgtggtcgg tgcgtccagt gttgggattt cattcctaga gacactggtg
     2101 ttttgctctc acctgaaatt taataatctc accctgattt caactcatgg actcccagga
     2161 aaaagacttt tgcacaacga acagaggaag tttctagcaa gcgaccactg ttttaatgat
     2221 aaggattatg cactgatgtc actgtgctcc tgggtgaacg ttgtggttgg tcgaatgacg
     2281 gccatagacc gagcagccaa gcaggttgtg gtttccaaga gtgagatcgt gttctacgac
     2341 cacctcattc tctgtaccgg gctgcagtac caggttccgt gccccacagg ggctgatact
     2401 gagcagcacc tgacgaacag agaggttttg gagctcagca agcagcggta caccggcact
     2461 gttccttcca acctgttcat tctcaacgac gaggaagact gcgttaggat gctctgttgg
     2521 ctgagaaaca gctccatcct cacagaaggg aaggtcattg tctacgggaa tacactcgac
     2581 gcttacacaa cagtggagac actcctcaac attggcatga aggggagcgg catctacttt
     2641 gtgcatcccc caactgaatc aaacataacc tgtatcaaca acaatgatgt agagagtgcc
     2701 gtggaagatg cactcagtgc cgctggggtg acagtctttc atgacgcctt gttggctcag
     2761 tggaaccatg gccagcaccc ggatcctatc tacaatgcct gcttcaccac ctccaccaag
     2821 cctatcagac tggagtgttc agcgttcttc agcttctaca agaagaatgt ggattacgaa
     2881 acatttaaag catttaatga tgcatgcctt gtctatgatg gccgacttgt gatcgatact
     2941 accttccaca ccaatgacat agccatcaga gctgctggtt ccctcaccaa attctccaac
     3001 cgatattact caaatgagtg gactcacagc aatttcagtt ccaaagaaat tggcttccag
     3061 ctggctgcag ctatgctcag tctctttgac ccaacccttg agcctgtgac tgaaccacca
     3121 gctgaccttg accgcctcat ccccatgtac aagggagcca agatccaagg agggattctt
     3181 cctgggtctt atcattatct gcatatttcc aaacctgcca tcccaactcc tttgaatcta
     3241 caaaggtcac agcctgattt tggttcagac gtagtgacag gtaatgcgaa aaaggggacg
     3301 tacttccgac tatacattaa caactataag ttggtggagg ccatcacgtg cttttcaaag
     3361 gagcctttcc catcctccaa ctacatccgc ttgtttggac aacatgagca agtcctcaac
     3421 aacctgtgta ctcgctttga tgacaaactg atcccagatc tttacagcta cttcacagag
     3481 ccgtggtgca tggccctctt ccacgatcgt tttattgatc tcaagaaaga gttgcgccaa
     3541 atcttaatct ccaagcagga ggaagacaag cctaccatgg aggagatagc ctaccggtta
     3601 gaggaggaag aaataaacct gaatgagaag ccccagaaat acctccaaag ggtttttgag
     3661 gattccatct acaaaagcct gctggagaag agcatcctag attaccttca ttacaaccag
     3721 taccacctgc ccatgtacgc atggccaggc atcatttagc tgtagccagc gccccacccc
     3781 ccgctggcat cacttccact ctctgtcagc caagtgctga cagaacaccc caacccccat
     3841 cccccactat tatacccttt tttcctcccg tgttttccgt gtattccagt aggtggcgct
     3901 aggctgtgtg gccctgctaa gccagggaac tttacaaaca ggcatgttca gagcagaata
     3961 agccactcta gcgataaaaa gagctcctac aaagca
//
