LOCUS       NM_001347060           10112 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus cilia and flagella associated protein 54 (Cfap54),
            mRNA.
ACCESSION   NM_001347060 XM_011243640
VERSION     NM_001347060.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 10112)
  AUTHORS   Miyata,H., Morohoshi,A. and Ikawa,M.
  TITLE     Analysis of the sperm flagellar axoneme using gene-modified mice
  JOURNAL   Exp Anim 69 (4), 374-381 (2020)
   PUBMED   32554934
  REMARK    Review article
REFERENCE   2  (bases 1 to 10112)
  AUTHORS   McKenzie,C.W. and Lee,L.
  TITLE     Genetic interaction between central pair apparatus genes CFAP221,
            CFAP54, and SPEF2 in mouse models of primary ciliary dyskinesia
  JOURNAL   Sci Rep 10 (1), 12337 (2020)
   PUBMED   32704025
  REMARK    GeneRIF: Genetic interaction between central pair apparatus genes
            CFAP221, CFAP54, and SPEF2 in mouse models of primary ciliary
            dyskinesia.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 10112)
  AUTHORS   McKenzie,C.W., Craige,B., Kroeger,T.V., Finn,R., Wyatt,T.A.,
            Sisson,J.H., Pavlik,J.A., Strittmatter,L., Hendricks,G.M.,
            Witman,G.B. and Lee,L.
  TITLE     CFAP54 is required for proper ciliary motility and assembly of the
            central pair apparatus in mice
  JOURNAL   Mol Biol Cell 26 (18), 3140-3149 (2015)
   PUBMED   26224312
  REMARK    GeneRIF: This study identifies a critical role for CFAP54 in proper
            assembly and function of mammalian cilia and flagella and
            establishes the gene-trapped allele as a new model of PCD
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122326.4, AC162939.6 and AC168049.2.
            
            On Mar 6, 2019 this sequence version replaced NM_001347060.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: KM983399.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-358               AC122326.4         64962-65319
            359-464             AC122326.4         76650-76755
            465-608             AC122326.4         79734-79877
            609-780             AC122326.4         81332-81503
            781-839             AC122326.4         85064-85122
            840-983             AC122326.4         98507-98650
            984-1097            AC122326.4         101217-101330
            1098-1199           AC122326.4         101456-101557
            1200-1398           AC122326.4         103157-103355
            1399-1580           AC122326.4         107335-107516
            1581-1746           AC122326.4         107606-107771
            1747-1829           AC122326.4         108688-108770
            1830-1964           AC122326.4         111031-111165
            1965-2115           AC122326.4         111763-111913
            2116-2192           AC122326.4         113622-113698
            2193-2321           AC122326.4         117416-117544
            2322-2448           AC122326.4         117866-117992
            2449-2535           AC122326.4         121047-121133
            2536-2657           AC122326.4         121450-121571
            2658-2834           AC162939.6         246983-247159       c
            2835-2927           AC162939.6         241973-242065       c
            2928-3113           AC162939.6         241563-241748       c
            3114-3250           AC162939.6         232361-232497       c
            3251-3398           AC162939.6         229518-229665       c
            3399-3554           AC162939.6         227783-227938       c
            3555-3677           AC162939.6         225170-225292       c
            3678-3803           AC162939.6         214722-214847       c
            3804-3921           AC162939.6         212506-212623       c
            3922-4011           AC162939.6         209533-209622       c
            4012-4138           AC162939.6         207506-207632       c
            4139-4253           AC162939.6         203133-203247       c
            4254-4351           AC162939.6         202435-202532       c
            4352-4582           AC162939.6         200239-200469       c
            4583-4725           AC162939.6         198028-198170       c
            4726-4913           AC162939.6         195006-195193       c
            4914-5141           AC162939.6         192829-193056       c
            5142-5365           AC162939.6         187459-187682       c
            5366-5501           AC162939.6         187222-187357       c
            5502-5613           AC162939.6         185596-185707       c
            5614-5766           AC162939.6         173415-173567       c
            5767-5961           AC162939.6         170689-170883       c
            5962-6049           AC162939.6         168750-168837       c
            6050-6259           AC162939.6         168272-168481       c
            6260-6326           AC162939.6         165629-165695       c
            6327-6509           AC162939.6         163103-163285       c
            6510-6596           AC162939.6         158301-158387       c
            6597-6719           AC162939.6         151869-151991       c
            6720-6773           AC168049.2         226737-226790       c
            6774-6981           AC168049.2         222168-222375       c
            6982-7046           AC168049.2         219919-219983       c
            7047-7216           AC168049.2         216902-217071       c
            7217-7319           AC168049.2         205519-205621       c
            7320-7467           AC168049.2         204141-204288       c
            7468-7625           AC168049.2         203173-203330       c
            7626-7802           AC168049.2         202851-203027       c
            7803-7929           AC168049.2         202592-202718       c
            7930-8085           AC168049.2         196361-196516       c
            8086-8191           AC168049.2         193843-193948       c
            8192-8279           AC168049.2         192849-192936       c
            8280-8378           AC168049.2         188491-188589       c
            8379-8520           AC168049.2         186627-186768       c
            8521-8694           AC168049.2         157294-157467       c
            8695-8915           AC168049.2         154222-154442       c
            8916-9083           AC168049.2         147557-147724       c
            9084-9190           AC168049.2         138929-139035       c
            9191-9332           AC168049.2         133785-133926       c
            9333-9422           AC168049.2         119034-119123       c
            9423-10112          AC168049.2         93513-94202         c
FEATURES             Location/Qualifiers
     source          1..10112
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 47.44 cM"
     gene            1..10112
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /note="cilia and flagella associated protein 54"
                     /db_xref="GeneID:380654"
                     /db_xref="MGI:MGI:1922208"
     exon            1..358
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     CDS             27..9542
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /note="ciliary and flagellar protein 54"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 54"
                     /protein_id="NP_001333989.1"
                     /db_xref="CCDS:CCDS88073.1"
                     /db_xref="GeneID:380654"
                     /db_xref="MGI:MGI:1922208"
                     /translation="MASSRSSSSSSEESPDSETSVSPVHLPPTPPPTSTAVLKSPSES
                     KSSSTDPPQCTHSEDSLPSAAFYGPLDSKNPLLASCEKEIRELLGFMKKKKALATSME
                     QKYEFHRRCATTLFNIWTKYAPRLPSNYYNEKLLKVGDSLCQIKEYKLALLQCYGRYL
                     QEFIADFDEHKEDVNHFKTVFFPKGFGDETARLTFHALSGKNICNYQLVCESDANLQN
                     EESVRQCLHILSSFRLIMQVALPQEHLCWIIFNGTLYIYTICRKLMVIGQSSKALEFL
                     LWASMCMESSVPLLSIRYLTWRATLYTAVCQCHYDCQDGIHGEAFARRALAKIDELRQ
                     LELMSSSSSLETSRKYYREATIKMAVMIFKRGVFESRRKNKNVLRPKLRLNLKEAQSL
                     PWPRTVTERLLDELLDSTSSRFLAVLEALSDSNRRILQTGPLVTDEMELRDVVSELFM
                     AGKELLILSNVRSNGKLDFPQTSLLEHVVEKRNALSVGASVRFAKLAFTYEEWGLFES
                     LAGQLIHFLQKQDNPQSKKAEKDLILLLAVEPLINVKRNRGLIFPLETDKETQSIENY
                     LKHIACHESCMRTTFTEDTFSLAAILHFCVCVPTQGVLPDKDIVVDIIGLLWQRCKLG
                     IQRLNIPKNDFAKYSHKISTNKWVYLLWQISEVIHCYKLEDLDIVMVAEITLRLSEIL
                     ESLGSPKRKFKKSADLSAKKGPDELPGTSKGVPEILPILKRAPVEQLFYAYELLDKAI
                     IGMSWKCMLTTLSDGSSVIDHCYVKDSQDVDGDTYKPIASNSYTMDLHLELIQAQHRI
                     AVVLLDQLEVLQAPTVSTNTPAKGWEKVKKPRSTECFTELTVMKKIKKNKLSKAIYLM
                     QKALLLFEKDAVCETSRNLLMEANALIEKVEAEQNALYSYQKFLGSSKIKKSRIPPPP
                     ILLARTHCSVTLKPAPFISEVKASWYCILGCKADGSYGKVRLNNNHLPNSGEAIPADG
                     RSFFEIKGLETNAQYCFAIAAYSSSGKLIGDAIGETTKPILIYPPLSAVTARMYLTQV
                     AYQIGNYEMAKKVFSPVWDYFVASPLPDEQSVICLSNIMTITQKRLHSNILADTSSIL
                     LYLFLRNIFVMSDIKIKEENLFCDNIKGNEIFPAQQVARLVECENVLVALELSNFLND
                     ANFALQAVTQCYGLLAPIIYHNIVLVPVIQILIKCIVVLQGIPSIIHSKKNISSFESI
                     QHMIACCIFYMTKILRSWKEYDLAIMLINYGKKMLDITSGCRSLFGIEQEETAEEGVC
                     SKKTSRTKKPQQVLLPEKINEQLALLETHLLKTTKQINSAELSGSEDPIFLYPIVLNW
                     TVKGAMKEVMKFKQRPRFLEFFTQIMLKCMNDEKFHLMVEISAPVYDFLKRRNESLIG
                     VKRIKYKETVISRRALKSPSKFKAIVIEIGKSSDLTRRRRKKKKTLKDFFYKNPSIFD
                     MAELDRNKRTDVRKMAYRSLSDNLNPLILTYVRRKRFHQILLEELPWRAQMNLYLANA
                     HFHLFLQKLTERTKERLGSSYSSVSFRSCDPNLFSLFHSGTVLPTAKLTVDSYNAMMD
                     ALTVSKKKKHNQTTDTEDLSVLFNSKSDDNIPKMKTQTIYESDSQLGIGVNVREKDRT
                     LVWGLDHFMKIFLCCRRAMVLAYRGGYWTLLQNCCRVFWNFSRELQILLKQTVASCKT
                     FPVSQDNFLCICVLPFYLGAELLIDMLIKLQSTNSIKPFEERGEFSIPSCYGNIKSDN
                     GGSSLIFEHPLDDVNVVDLRWIHDFVLKSLEVLYQVEKWETLVSLAIQFNIISHERYT
                     EQVTPLLVYAQRQLVQRIKELNGPELSRQACARYEAENGEKITCRNFIGKRLKIDSST
                     PKNLAELQGSSEPLKTLITSEQRLAKQLVSVPLDVNDTLRCFRETLEKSKYHNRSVRH
                     SRKLLSLFLAQTQDERGGMDNSKFTPGKVEFCLGTEEMHMPTPPDLSQENFRVFSSVE
                     KSKLPSSQLGLVISSYYQTIDVLQTSNQRSLKVQSLHSLGSLLLFADKKRAAFKCWSQ
                     ALDDIFRKPDVLHNWKEFGTSLPGAPSSSSPPGFKDYSEEFLSKFGIWGCLQAAMITA
                     KIAQFIKTANVKKRINCCILSALLFQSLLRTTLPHPKAERNYAQYEITQLLPGIELFS
                     DKFRADICSVIASLYYVIRELHYAKYNLIVLPLLALYQYFVSVICQDIVRNLEARILK
                     IEILIDLGFFSEAFYELFQIYHGKNMPCAIPAGYKATMKVKITQSFDSGKPLTHKDNM
                     QALEELINRGLPHILVNLGYQHLLNKFNFAKSHFFISLAATINCIPDPSPKIMYYQFI
                     TERSKPTPQNLKDNENSHGQFLRLRDDYNLNTIKSILLMEAEEKVNSLLSETEHQCHR
                     PLYLSSVLELEIMVEARLHLAAIALQRYRPAYSTAILYSTLKLLQDSKVFKKKVPEES
                     CSPTSPETSTTESKDDSEFLDPISLNSREYFNIHLWLRCRLMLVTSFIAQIRGIGIMK
                     ESELTDCLSLIDEVCTEAKSADDTEVLAEFLMQAVVLGLQEKHFKADIIQKLKEIISL
                     LEGSEFLSPRSWLTLAKSLILMDDLTKAEKFKKASSKENKLIFLNQAHRILIAQMLTF
                     GETIEFPLSDSDYASPLQPLKNIYLPHVMLLAKVKLRIGHTMAKQVCSSSKKKDISKW
                     LPVLHMFDMALKVCKATAAEEYEVEAEILFQKGRIERQMLMEEKTSIAHIESFFEAIQ
                     ISLKNDQNSGLIRDSYLEIALVYFYLKKPKRKASATTLKPLPRRHSSVKDPVATQTEM
                     YSSLAWIAIRAAAQVSESVLGINLLIGKKRAMIDKVNNITLPNIPEFATVDLLSSYTD
                     YLLENYQVVFQTSNSLMCENDDVYDCIDGRKRNLSKVDVTWILLIRYYIHLQRINNMS
                     KLLASATPVSGISLPDDTLLTSLYNSELILRQKEMHLFLKRFLQLYSSSCIDGFPREL
                     LQGLENISLEKVLFESSGKVHRDSSLQSDLSGKLTVCPSYTEISSEMAVQALNKELCF
                     QWYIPPLDKPLKDSEPMVLLLYAYNLKPLRILDIKVSTGNSLYVGTSWIPLRSVIAVH
                     QKLSNLAQIAEISLPSVPEVTSEENIYETIEPEDKPIDTDLENMILECCSEIEALFSN
                     NKDKDNEPPPPMTKVPFDVSLPAIFSLERLFDLANGCIVSVGSLFNWMVSIIQ"
     exon            359..464
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            465..608
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            609..780
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            781..839
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            840..983
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            984..1097
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            1098..1199
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            1200..1398
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            1399..1580
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            1581..1746
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            1747..1829
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            1830..1964
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            1965..2115
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            2116..2192
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            2193..2321
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            2322..2448
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            2449..2535
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            2536..2657
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            2658..2834
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            2835..2927
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            2928..3113
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            3114..3250
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            3251..3398
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            3399..3554
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            3555..3677
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            3678..3803
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            3804..3921
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            3922..4011
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            4012..4138
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            4139..4253
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            4254..4351
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            4352..4582
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            4583..4725
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            4726..4913
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            4914..5141
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            5142..5365
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            5366..5501
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            5502..5613
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            5614..5766
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            5767..5961
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            5962..6049
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            6050..6259
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            6260..6326
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            6327..6509
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            6510..6596
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            6597..6719
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            6720..6773
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            6774..6981
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            6982..7046
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            7047..7216
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            7217..7319
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            7320..7467
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            7468..7625
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            7626..7802
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            7803..7929
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            7930..8085
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            8086..8191
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            8192..8279
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            8280..8378
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            8379..8520
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            8521..8694
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            8695..8915
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            8916..9083
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            9084..9190
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            9191..9332
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            9333..9422
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     exon            9423..10112
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /inference="alignment:Splign:2.1.0"
     regulatory      9602..9607
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /note="hexamer: AATAAA"
     polyA_site      9628
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /note="major polyA site"
     regulatory      10083..10088
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /note="hexamer: AATAAA"
     regulatory      10088..10093
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /note="hexamer: AATAAT"
     polyA_site      10102
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
                     /note="major polyA site"
     polyA_site      10112
                     /gene="Cfap54"
                     /gene_synonym="4930485B16Rik; Gm872"
ORIGIN      
        1 ctctagcctg ctgaactctg atagacatgg cgtcctccag aagctcctcc agttcttctg
       61 aggagtcccc agactctgag acatcggtgt cgccggtgca tctgccccca acgccgccgc
      121 cgacctctac cgcggttctc aagtcgccca gcgagtccaa gtcgagttcg accgacccgc
      181 cgcaatgtac ccactccgag gactcgctgc cctctgccgc cttctacggg cccctggaca
      241 gtaaaaaccc actcctggcc tcttgcgaga aggagatccg ggagctgttg ggctttatga
      301 agaagaagaa ggctctagcc acctcaatgg aacagaagta cgaattccat cggaggtgtg
      361 ccaccacgct gtttaatatc tggaccaaat atgctcccag gctgccgtcc aactattaca
      421 acgagaagct cctgaaggtt ggagacagcc tctgtcaaat aaaagaatac aagctggctc
      481 ttctgcagtg ctatgggcgg tatctccagg aattcattgc tgatttcgac gagcataaag
      541 aagatgtaaa tcatttcaaa actgtcttct tcccaaaagg ttttggagat gaaacggcca
      601 gactcacatt tcatgctttg agtggaaaaa atatttgcaa ctaccagctg gtctgcgaaa
      661 gcgatgccaa cctgcagaat gaggaatccg tgagacagtg cctgcacatc ttgtcctcct
      721 ttcggctcat catgcaggtg gctctccctc aggagcacct ctgctggatt atcttcaacg
      781 gtacccttta catctacacc atttgccgga agctgatggt cataggacag tcttccaagg
      841 ccttggagtt cctgctgtgg gccagcatgt gcatggagtc ctctgtcccg ctcctgtcca
      901 tcaggtacct gacatggaga gccactctct acactgccgt ctgccagtgc cactatgact
      961 gtcaggatgg catccacggg gaggcatttg ctcggcgtgc gctagctaaa attgatgagt
     1021 taaggcagct ggaattaatg agctcctcgt cgtctctgga aacctcccga aaatattaca
     1081 gagaggccac gataaagatg gctgtgatga tcttcaaaag aggagtattc gagtctcgaa
     1141 gaaaaaacaa aaatgtgtta agaccgaagc taagactcaa cctaaaggaa gctcaaagtt
     1201 tgccctggcc acggacagtc actgaacggc tgctggatga gctacttgac agcacctcat
     1261 cgcggtttct ggctgtcttg gaagccctct ctgactcaaa caggcggatc ctgcagactg
     1321 gaccgctggt tactgacgaa atggagctgc gtgatgtggt gtcggagctg tttatggctg
     1381 gaaaagaact tttgatactt tcaaatgttc gttcaaatgg aaagcttgat ttcccccaaa
     1441 cgagtctcct ggagcatgta gtagagaagc ggaatgctct ttccgtgggt gcttctgtga
     1501 ggtttgccaa gctggctttt acttacgaag aatggggatt atttgaatcc ctagctggac
     1561 agcttattca ctttctccag aagcaggaca acccccagtc aaagaaagca gagaaggatt
     1621 taattcttct gcttgcagtc gaaccattga tcaatgtgaa gagaaacaga ggtttgatct
     1681 ttcctttgga aaccgataag gagacacagt ccattgaaaa ttatctaaaa cacatagctt
     1741 gtcatgagtc ttgtatgagg accacattca cggaagacac ttttagcttg gcagcaattc
     1801 ttcatttctg tgtctgtgtc cctacccagg gtgttcttcc ggataaagat atcgtcgtgg
     1861 acataatagg gcttttatgg cagagatgca agctaggaat tcaaaggctc aacataccca
     1921 aaaacgactt cgcaaaatat tctcacaaga tcagcactaa caaatgggtt tatctcctgt
     1981 ggcagataag tgaggtgata cattgctata aactggaaga cctggacatt gtgatggtgg
     2041 cggagatcac gttacgatta agtgaaatac tagagtcttt gggaagcccg aaaagaaaat
     2101 tcaaaaaatc tgcagattta tctgcaaaga aagggcccga cgagttgcct gggacttcaa
     2161 aaggggtccc agaaatcctt ccaatattaa agcgagcacc cgtggaacag ctgttttatg
     2221 cgtatgaact ccttgataaa gcaatcattg gcatgagctg gaaatgcatg ttaactactt
     2281 tgtcagatgg atcatccgtg attgaccatt gctatgtcaa ggactctcaa gacgtagatg
     2341 gagacactta caaaccgatt gcatcaaaca gctacacaat ggacctacat cttgaattga
     2401 ttcaagctca gcaccgtata gccgttgtgc tccttgacca actggaagtt ttgcaggctc
     2461 caactgttag cacaaacact cctgccaaag gttgggaaaa agtaaagaag cccagaagca
     2521 ctgagtgttt cacagagtta actgtaatga agaagataaa gaagaacaag ctgtccaaag
     2581 ccatctacct gatgcagaag gctcttttac tgtttgagaa agacgcagtg tgtgagactt
     2641 cacggaactt gctgatggaa gcgaatgcct taattgagaa ggtcgaagca gaacaaaatg
     2701 ccctatattc ctatcagaag ttcttgggga gctcaaaaat aaagaagagc agaattcctc
     2761 ccccacccat cctgctggcc cggactcact gctctgtgac cctgaagccc gcgccgttca
     2821 tctcagaggt taaggcgtcc tggtactgca tcttgggttg caaagcagat ggaagctatg
     2881 ggaaagtaag gctgaacaac aaccacctcc caaactcagg agaagcgata ccagccgatg
     2941 gcagaagctt ctttgaaatt aaaggtttgg aaacgaatgc acagtactgc tttgcgatcg
     3001 ctgcttactc gtccagcggg aaactcattg gtgatgctat tggggagaca acgaaaccaa
     3061 ttctcattta cccgcctctc tctgctgtca ccgctcggat gtacctgaca caggtcgctt
     3121 atcagatcgg taactatgag atggccaaga aagtcttctc accagtctgg gattattttg
     3181 ttgcctctcc gctaccggac gagcagtcgg ttatctgtct aagcaacatc atgacaataa
     3241 cgcagaaaag gcttcattcc aacatcttgg cagacacttc ttcgatcctc ttgtaccttt
     3301 tcctcagaaa tatctttgtg atgagtgaca ttaaaattaa agaagagaat ctcttctgtg
     3361 ataatattaa aggcaacgag attttccccg cccagcaagt cgctagactg gtggagtgtg
     3421 agaatgtgct agtagctctg gagctcagca acttcctcaa tgacgccaac ttcgccctcc
     3481 aagcagtgac ccagtgctac gggctcctcg cacccattat ctaccacaac atcgtcttgg
     3541 tacctgtcat ccagatcttg ataaaatgta ttgtggtttt gcaaggaata ccaagtatta
     3601 ttcactcaaa gaaaaatatc tccagctttg aaagtataca gcacatgata gcttgctgca
     3661 tcttctacat gacaaagatt ctacgttcct ggaaggagta tgacctggca ataatgctta
     3721 taaattatgg gaaaaagatg ctggatatca catcagggtg caggtctctt tttggtattg
     3781 agcaagagga aactgcagag gagggtgttt gttctaagaa aacttcaaga accaagaagc
     3841 cacagcaggt gctgctgcct gaaaagataa atgaacagct ggccttgttg gagacacatc
     3901 tactcaagac gacaaagcaa atcaactcag ctgaactatc cggatcggag gaccctatct
     3961 tcctttaccc tatagttttg aactggacgg tgaagggcgc catgaaggaa gtcatgaaat
     4021 ttaagcaaag accaagattc ctggaattct ttacacaaat tatgctcaaa tgcatgaacg
     4081 atgagaagtt tcatctcatg gtggagatat ctgcccctgt ttatgacttc ttgaaaagga
     4141 gaaatgagtc ccttattgga gtgaaaagga taaaatataa ggagactgtc atttctagga
     4201 gggcactcaa gtctcccagt aagtttaaag ccatagtgat cgagattggc aagagttcag
     4261 acttaacaag aagacgaagg aagaaaaaga aaactctaaa agactttttc tacaagaatc
     4321 catccatttt tgatatggca gagctggaca gaaacaagag aacggacgtc aggaaaatgg
     4381 cataccggag cctgagtgat aacctgaacc ccttaatctt aacgtacgtt agacgaaaga
     4441 gattccatca aatacttctt gaggagttgc cctggagagc tcagatgaac ctctatctgg
     4501 cgaatgctca cttccacttg tttttacaaa agctgaccga gcgcacaaag gagagactcg
     4561 gctcatcgta ttcaagtgtc agcttccggt catgtgaccc taacctcttc tcattgttcc
     4621 actctggaac agtgttacca acagcaaagc tgactgtaga cagctacaat gcaatgatgg
     4681 atgccctcac tgtctctaag aaaaagaagc acaaccaaac cacagataca gaagatttat
     4741 ctgtactttt caattccaaa agcgatgata acattcccaa gatgaaaaca caaacaattt
     4801 atgaatcaga ctctcaatta ggcattggtg ttaatgtcag agagaaggat cgaacgctgg
     4861 tttggggact ggatcatttt atgaaaatct tcttatgttg caggagagcg atggttcttg
     4921 cataccgtgg tggctactgg actctactgc agaattgttg cagggtcttc tggaactttt
     4981 cccgggagct gcagatacta ctgaagcaga ctgtggctag ttgcaaaacc tttcctgtta
     5041 gccaggataa ctttctctgc atctgtgtgc taccctttta cctgggcgca gaactactta
     5101 ttgacatgtt gataaagctg cagagcacaa actctatcaa gcccttcgag gagagaggcg
     5161 agttcagcat tcccagctgt tacgggaaca tcaaatctga taatggaggt tccagcctga
     5221 tctttgaaca tcctttggat gacgtcaacg tggtagattt gagatggatc catgactttg
     5281 tgttgaagtc tctggaggtt ctataccaag tggagaagtg ggaaactctg gtgtctcttg
     5341 ccattcagtt caatattatt tcacatgaga ggtacacaga gcaagtgacc ccgctgttgg
     5401 tgtatgctca gcgccaactg gtccagagga taaaagagct gaatggccct gagctctccc
     5461 gtcaggcttg cgccagatac gaggctgaaa atggagagaa gatcacctgt cgaaacttca
     5521 ttgggaagcg cctcaagatt gattcttcca cacccaagaa cctggctgag ctacaaggca
     5581 gttctgaacc cctgaagaca ctcatcactt cagagcagag actagccaaa cagcttgtct
     5641 ctgtgcccct ggatgtgaat gacactttga gatgcttcag agagaccctg gaaaagtcca
     5701 aatatcataa cagatcagtc cgacacagca gaaagctgct ttctttattt cttgcacaga
     5761 cacaagatga aagaggaggg atggacaact caaaatttac tccagggaag gtggagtttt
     5821 gcctgggaac ggaagagatg cacatgccaa caccccccga cctttctcaa gaaaacttcc
     5881 gagtttttag ctccgtggag aaaagcaaac ttccctcctc acagctgggg ctggtcattt
     5941 cttcctacta ccaaactatt gatgttctcc aaaccagcaa tcaaaggagc cttaaagttc
     6001 agtccctgca ttctcttgga agcctcctcc tctttgcaga taagaaaagg gctgctttta
     6061 aatgctggag ccaagctctt gatgatatct tcagaaaacc agatgtgcta cacaactgga
     6121 aagaatttgg cacctccctc cctggtgccc ccagcagctc ctcacctcct ggtttcaaag
     6181 actacagtga agaatttcta tcgaaatttg gcatctgggg gtgtttgcaa gcggcgatga
     6241 tcacagcgaa gatagcgcag tttattaaga ctgcgaatgt taagaaaaga atcaactgtt
     6301 gtatattgtc tgcattgctt tttcagagtc tgctccgtac tacactccca catcccaaag
     6361 ccgaacgtaa ctatgctcag tacgaaatca cccagctcct ccctggcatc gagctcttct
     6421 cggacaaatt cagggccgac atctgcagtg ttatcgcaag cctgtattac gtcatccgag
     6481 agctgcacta tgctaagtac aacctcatag ttctgcctct tcttgcactg taccaatatt
     6541 ttgtgtctgt catttgccaa gacatagtca gaaatctaga agcaagaatt ctcaagatcg
     6601 aaatccttat agatttaggc ttcttttccg aagccttcta tgagctattc cagatttatc
     6661 atggaaagaa catgccgtgc gccatacctg ctggctacaa agcaacaatg aaagttaaga
     6721 taactcaatc attcgattct ggaaaacctc tcacccataa agacaacatg caggcacttg
     6781 aagagctaat aaacagaggc ttgccccaca ttctggttaa cctcggctac cagcatctct
     6841 taaacaaatt taattttgcc aagtcacact tcttcataag tttggctgcg acaatcaact
     6901 gtattcccga tccttcacca aaaataatgt actaccaatt tattactgag aggagcaaac
     6961 ccacccccca aaacctgaaa gataatgaaa actctcatgg tcagtttttg agactgagag
     7021 atgactacaa ccttaacacc atcaagtcca ttttactgat ggaggcagag gagaaggtca
     7081 actccctgct gtcggagaca gagcaccagt gccacaggcc cctctatctg tcctctgttt
     7141 tggagctgga gatcatggtg gaggctaggc tacacctggc agcaatcgcc ctgcagagat
     7201 acaggccagc atacagcact gccatcctat actctacact gaagcttctc caggattcga
     7261 aggtgttcaa aaagaaagtg cccgaagagt catgcagccc cacctctcca gaaacttcta
     7321 ccacagaaag taaagatgac agtgagtttt tagaccccat ttccctgaac tcccgggaat
     7381 acttcaatat tcacctttgg ctgaggtgcc gcttgatgct ggtaacttcg ttcatcgcac
     7441 agattcgcgg tattggaatc atgaaagaga gtgagttaac agactgtctg agcctcatcg
     7501 atgaagtatg cacagaggca aagagtgccg acgacacaga ggtcctggcc gagttcctaa
     7561 tgcaagctgt ggtcctgggc cttcaggaga agcactttaa ggcagacatc atacaaaagc
     7621 ttaaggaaat tatcagtttg ctggaaggga gcgaattcct ttctcccaga tcctggttaa
     7681 ccctggcaaa aagcctcatt ctgatggatg acttaacgaa agctgagaaa ttcaaaaaag
     7741 catcttcaaa agagaacaaa ttaattttct tgaatcaagc tcacagaatt cttattgcac
     7801 agatgttaac ttttggagag accattgagt tccccctctc agatagtgac tatgcaagcc
     7861 cattgcagcc gttgaagaat atctaccttc ctcatgtcat gctactggcc aaagtaaaac
     7921 tgaggattgg acacaccatg gccaagcagg tatgttccag cagcaagaag aaggacatca
     7981 gtaagtggct gcccgttctg cacatgtttg acatggcttt gaaggtctgt aaagcaaccg
     8041 cagcagagga atatgaagtg gaggctgaga ttctatttca gaaaggaaga atagagcgtc
     8101 aaatgctgat ggaggagaaa acgtcaattg cacacatcga gagttttttc gaagctattc
     8161 aaataagcct gaaaaacgat cagaactcag ggttgataag ggattcctac ctcgaaatcg
     8221 ccctggtgta tttctatctg aagaagccaa agaggaaggc ttcagccaca acactcaagc
     8281 ctcttcccag aaggcacagc tctgttaaag acccagtagc aactcaaact gagatgtata
     8341 gctcactggc ctggatcgca atacgagctg ctgcacaggt cagtgaatct gtactgggga
     8401 tcaacctcct gataggaaag aagagggcca tgatcgacaa agtcaataac attacattgc
     8461 caaacatccc agagtttgcc acggtggatc ttctgtcttc atatacagat tatttactcg
     8521 aaaactacca agttgttttc cagacttcca actcacttat gtgcgaaaat gatgatgtgt
     8581 atgactgtat agatgggaga aagaggaacc tatccaaagt ggatgttacg tggatccttc
     8641 tcattcgcta ctatattcac ctacaaagaa tcaacaacat gagcaagctg ctagcatctg
     8701 caactccggt ctcagggatt tctttgcctg atgacacact tctcacgtcc ctgtacaact
     8761 ctgaattgat tttgcgccaa aaagaaatgc atcttttcct gaaacgattc ttacagctct
     8821 actcttcttc atgcattgat ggatttccaa gggaacttct tcaaggtttg gaaaacattt
     8881 cactagagaa agttctgttc gaatcatcag gcaaggttca tcgggacagc tccctgcagt
     8941 ctgacttatc tggcaagctc accgtctgcc catcttatac agaaatctca tcagaaatgg
     9001 cggttcaagc tttaaacaaa gaactttgct ttcagtggta tattcctccc ctggacaaac
     9061 ctctaaagga ttcagaacct atggttttat tattgtatgc atataacctg aagcccctga
     9121 ggattttaga tatcaaagtt tctactggca acagcctgta cgttggcacc tcctggattc
     9181 cactgaggag cgtcattgca gttcaccaga aactatctaa tcttgcacaa atagccgaga
     9241 tatccttacc atcggttcct gaagttactt cagaggaaaa tatctatgaa acaatagaac
     9301 ctgaagataa accaattgat acagacttgg aaaacatgat cctcgaatgt tgctctgaaa
     9361 tagaagctct gttttccaac aacaaagaca aagacaatga gccccctcct ccaatgacca
     9421 aggttccatt tgatgtctcc ctgcctgcta tattcagcct cgagagactt tttgatcttg
     9481 cgaatggttg cattgtgtca gtaggaagcc ttttcaactg gatggtgtca attattcagt
     9541 gaacatcctt tacagggtaa ctgtctaggg ggacttcatt gttactcatc tttttgttag
     9601 aaataaattt ctaaattttt taatctcaga aatactaata tttcctgtta tgttgaactg
     9661 aagaagtttc gttatttggc ttgggaagaa cattttagcc ttatatggta cttgcttcag
     9721 aggggttctc agcagagaat tattgtacta gctttggaat cttgtagatc tgggtctatg
     9781 ttggaacttc accacctgct tgctccatat ctttaaagaa ttagcttcaa ttcttatgct
     9841 tttgcttctt catctataga gtgggatatg agtatctatt tcataacact gctggtatgt
     9901 actaaagtga gtgaagtaga aaaatgaggt gtgcatctca ggcctgatga agtaagagag
     9961 catggagtga catttgattg gtaactggag agggagcagg ctttttgact gttcacctag
    10021 catctaacca tgccatatgc taatccttcc taggctctga cacatgaatg gatacttgta
    10081 aaaataaaat aatcaaaact aataatgtgc aa
//
