LOCUS       NM_028934               2751 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus CFAP20 domain containing (Cfap20dc), mRNA.
ACCESSION   NM_028934 NM_030216
VERSION     NM_028934.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK133893.1, AK047451.1, AK019627.1, AV327822.2 and AV127568.1.
            
            On Jul 23, 2009 this sequence version replaced NM_028934.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK133893.1, BC064468.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-88                AK133893.1         2-89
            89-497              AK047451.1         107-515
            498-1433            AK133893.1         500-1435
            1434-2109           AK019627.1         1392-2067
            2110-2477           AK133893.1         2112-2479
            2478-2546           AV327822.2         457-525
            2547-2729           AK133893.1         2548-2730
            2730-2751           AV127568.1         223-244
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 4.87 cM"
     gene            1..2751
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /note="CFAP20 domain containing"
                     /db_xref="GeneID:74430"
                     /db_xref="MGI:MGI:1926154"
     exon            1..313
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             293..2317
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /note="uncharacterized protein C3orf67 homolog"
                     /codon_start=1
                     /product="protein CFAP20DC"
                     /protein_id="NP_083210.3"
                     /db_xref="CCDS:CCDS26814.1"
                     /db_xref="GeneID:74430"
                     /db_xref="MGI:MGI:1926154"
                     /translation="MFKNEYQGGAFVEIFSAQGKNPGAKWKILGSPSVIWKEFDKEVK
                     SFVFVLEGSSQTNRIQLPKENKQILGLIQRFLVLQIYIPLGQDFSTELLITDLGNIKR
                     RLYLSTVHKEVSSTPLHAKIPLFMIQRKIWCNLCIDLVAFTSEIFKGAVFQSLDGIIV
                     SANCKLRKIFTLKSKPQETADKDDEPTDIIPRSCQLATDVPHVTQLLNMTKLRQTEIK
                     FGGHPLRSAESEQFISSGAGSVQNSKGQDVCHIAFGSRVLGPPPLSGRRNNLRQSTET
                     VRSIRYKNSQLCQQPTEERSVNSTEVSALLADQQGEKGSARPLKQTTPLPAKLPIPYP
                     HPPQEPSADKGSNRRRLRLKSSSGDRTEAHCGCSSGNNRSEEDVVMALNSIPQLRTEP
                     VRASTPEPPAPEQPDEWIFPESGGLTSDPAWSSPPLLLDEDSHTASNLWLETSKDSEH
                     DQAEETQRAPKDIFTFSSRPRSAPHGKSHDMSPKGCPFTLDTQDDSQVTKEDPKLEGG
                     FYGSESSEEEYNWRNYQPSQMSESELQMLASLRRQQNEDLEDTGAPHGLSASQVDHCN
                     VSISTSSDDTTTWNSCLPPPVNQGRHYQKEMNPPSPSNPRDWLNMLSPPIVPPSQQPV
                     EQSLDSSASLSVQGEEDPRVEEDEEVLTLLYDPCLNCYFDPQTGKYYELV"
     exon            314..403
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            404..497
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            498..570
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            571..685
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            686..842
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            843..980
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            981..1117
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1271
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1272..1388
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1389..1511
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1512..1843
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1844..2047
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2048..2109
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2110..2204
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2205..2751
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2628..2633
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2651
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /note="major polyA site"
     regulatory      2713..2718
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2731
                     /gene="Cfap20dc"
                     /gene_synonym="4930452B06Rik; 4933406L09Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcgggctgcg cggttcccgc gggcgcggtc ggtttgtgcc cggaggtagc tgcagggcgg
       61 tcacgtaggt tacacgcagt cactcggcgg agcccgcagg ccgctgtgcc accccctgcc
      121 gcggcgcccc gggcggggac cagaatggcg cgggtcggcg gctggaggct cagctgactg
      181 caggcgcgag gtgcggaggc gagcccgagc cagcggggcc cagagccggc tctgcctgtc
      241 cttcttcagc cagcaaactc tgtgcctgcc aaacacaggg ccctctgcgg gaatgttcaa
      301 aaatgagtac cagggaggtg catttgttga aatttttagc gctcagggga aaaatcctgg
      361 agcaaaatgg aagatcttgg gcagtccgtc tgtgatttgg aaagaatttg ataaagaagt
      421 taaaagtttt gtatttgtcc tggaaggcag cagccaaacc aacagaatcc agttaccgaa
      481 ggagaataag caaatccttg gactgatcca gaggtttctt gtgcttcaga tttacatacc
      541 cctgggacag gacttctcca ctgaattact aattactgat ttaggaaaca tcaaaagaag
      601 gttgtattta tcaacagtcc ataaggaagt gtcttcaaca cctcttcatg caaaaatccc
      661 actcttcatg atccagcgta aaatttggtg caacttgtgc attgacctgg tcgccttcac
      721 cagtgagata ttcaaaggag cagttttcca gtcgttggat ggaatcatcg tctctgctaa
      781 ctgtaagctg cggaagatct tcactttaaa atcaaagcct caagagacag ctgataaaga
      841 tgatgaaccc acagatatta ttccacgaag ctgtcaactt gcaacagatg ttcctcatgt
      901 tacacagctg ctaaacatga caaaactccg ccaaactgaa attaaatttg gaggtcatcc
      961 tctaagatca gcagaatcag agcagttcat cagcagcgga gcaggcagcg tccagaacag
     1021 taaaggtcaa gatgtgtgcc acatcgcctt cggatccagg gttcttggac cccctccact
     1081 ctctggcaga cggaataacc taaggcagtc cactgagaca gtaaggtcca ttcggtacaa
     1141 aaatagccaa ttgtgccagc agcctacaga agagaggagt gttaacagta cggaagtgtc
     1201 ggccttgctg gctgaccagc aaggagagaa aggaagtgct cgccctttga agcagaccac
     1261 acctcttcct gccaagctac ctattccgta tccacatccc cctcaagagc catcagcaga
     1321 taagggtagc aaccgaagaa gactccggct aaagagcagc agcggagaca ggacagaggc
     1381 gcactgtggt tgctcctcgg gaaataacag gagtgaagaa gatgttgtca tggccctcaa
     1441 cagtatccca cagctgagga cagagccagt gagagccagc actccagaac ccccggctcc
     1501 tgaacaacca gatgagtgga tatttcctga gagcggtggc ctaacctcag acccagcatg
     1561 gagcagtccg cctttgctcc tagatgaaga ctcccacact gcctcgaacc tgtggctaga
     1621 aaccagcaag gacagtgaac atgaccaggc agaggaaacc cagagggctc ccaaggacat
     1681 ttttaccttt tcatctagac caagatcagc gcctcatggg aaaagtcatg atatgtcccc
     1741 caaggggtgc ccatttactc tggacacaca agacgacagc caagtgacca aggaagaccc
     1801 caagttggaa ggcggcttct atggcagtga gagcagcgaa gaggaatata actggagaaa
     1861 ctatcagccc agccagatga gcgaatctga gctgcagatg ctggcgagcc tccggcggca
     1921 gcagaatgaa gacctggagg acactggggc tccccatggc ctgagcgcgt ctcaggtaga
     1981 ccactgtaat gtcagcatca gtaccagcag tgatgacacg accacgtgga actcttgtct
     2041 cccaccccct gtgaaccagg gccgtcacta tcagaaagaa atgaatccac cttctccatc
     2101 taaccctcga gactggctga acatgttgag cccacccatt gtccctccca gtcagcagcc
     2161 agtggaacag tctctcgact cctctgcaag tctgagcgtg caaggtgaag aggatccacg
     2221 tgtggaagaa gacgaggaag tgctgactct gttgtatgac ccatgtctca actgctactt
     2281 tgaccctcag actggcaaat actacgagtt ggtctagctc cttcatcgta acagcagcgt
     2341 gaagtccaca atgggcaccg tgactgggtg ttgggcatgg gggcccatgg agtcaaaagg
     2401 aatggagaga agggctttgt aaatagcatt taatgttaag aacatctgca ttctctttgt
     2461 agctgagtgc gtggctttga aagttgtgga ggaattaata cagacaccag attttaggct
     2521 ttgaatttgt tcttagttgt tcattccagt cctctaagtc tcatttcgta tacattatat
     2581 aagcaaatta agaattactc attcaaattt ttccagtgtt aatcgataat aaatgatggc
     2641 ttgatacact acagaaagtg tattcttgtt taaaagatgt ctgaaacctt tttatggcgt
     2701 gtttgtatta aaaataaagt atagaggcca agagagtgct tccttttgtt c
//
