LOCUS       NM_029283                562 bp    mRNA    linear   ROD 04-AUG-2024
DEFINITION  Mus musculus cilia and flagella associated protein 144 (Cfap144),
            transcript variant 1, mRNA.
ACCESSION   NM_029283 XM_001002721 XM_001002726
VERSION     NM_029283.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Zhou,L., Liu,H., Liu,S., Yang,X., Dong,Y., Pan,Y., Xiao,Z.,
            Zheng,B., Sun,Y., Huang,P., Zhang,X., Hu,J., Sun,R., Feng,S.,
            Zhu,Y., Liu,M., Gui,M. and Wu,J.
  TITLE     Structures of sperm flagellar doublet microtubules expand the
            genetic spectrum of male infertility
  JOURNAL   Cell 186 (13), 2897-2910 (2023)
   PUBMED   37295417
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Beckers,A., Ott,T., Schuster-Gossler,K., Boldt,K., Alten,L.,
            Ueffing,M., Blum,M. and Gossler,A.
  TITLE     The evolutionary conserved FOXJ1 target gene Fam183b is essential
            for motile cilia in Xenopus but dispensable for ciliary function in
            mice
  JOURNAL   Sci Rep 8 (1), 14678 (2018)
   PUBMED   30279523
  REMARK    GeneRIF: Surprisingly, mice homozygous for a null allele did not
            display any defects indicative of disrupted motile ciliary
            function.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 562)
  AUTHORS   Dykes,I.M., Szumska,D., Kuncheria,L., Puliyadi,R., Chen,C.M.,
            Papanayotou,C., Lockstone,H., Dubourg,C., David,V., Schneider,J.E.,
            Keane,T.M., Adams,D.J., Brown,S.D.M., Mercier,S., Odent,S.,
            Collignon,J. and Bhattacharya,S.
  TITLE     A Requirement for Zic2 in the Regulation of Nodal Expression
            Underlies the Establishment of Left-Sided Identity
  JOURNAL   Sci Rep 8 (1), 10439 (2018)
   PUBMED   29992973
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 562)
  AUTHORS   Stauber,M., Weidemann,M., Dittrich-Breiholz,O., Lobschat,K.,
            Alten,L., Mai,M., Beckers,A., Kracht,M. and Gossler,A.
  TITLE     Identification of FOXJ1 effectors during ciliogenesis in the foetal
            respiratory epithelium and embryonic left-right organiser of the
            mouse
  JOURNAL   Dev Biol 423 (2), 170-188 (2017)
   PUBMED   27914912
REFERENCE   5  (bases 1 to 562)
  AUTHORS   Tamplin,O.J., Cox,B.J. and Rossant,J.
  TITLE     Integrated microarray and ChIP analysis identifies multiple Foxa2
            dependent target genes in the notochord
  JOURNAL   Dev Biol 360 (2), 415-425 (2011)
   PUBMED   22008794
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL662903.10.
            
            On Apr 11, 2019 this sequence version replaced NM_029283.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC048748.1, BE848773.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-200               AL662903.10        30582-30781         c
            201-260             AL662903.10        27457-27516         c
            261-364             AL662903.10        25376-25479         c
            365-562             AL662903.10        21623-21820         c
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 36.3 cM"
     gene            1..562
                     /gene="Cfap144"
                     /gene_synonym="3100002J23Rik; Fam183b; Theg6"
                     /note="cilia and flagella associated protein 144"
                     /db_xref="GeneID:75429"
                     /db_xref="MGI:MGI:1922679"
     exon            1..200
                     /gene="Cfap144"
                     /gene_synonym="3100002J23Rik; Fam183b; Theg6"
                     /inference="alignment:Splign:2.1.0"
     exon            201..260
                     /gene="Cfap144"
                     /gene_synonym="3100002J23Rik; Fam183b; Theg6"
                     /inference="alignment:Splign:2.1.0"
     exon            261..364
                     /gene="Cfap144"
                     /gene_synonym="3100002J23Rik; Fam183b; Theg6"
                     /inference="alignment:Splign:2.1.0"
     exon            365..562
                     /gene="Cfap144"
                     /gene_synonym="3100002J23Rik; Fam183b; Theg6"
                     /inference="alignment:Splign:2.1.0"
     regulatory      536..541
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cfap144"
                     /gene_synonym="3100002J23Rik; Fam183b; Theg6"
                     /note="hexamer: AATAAA"
     polyA_site      562
                     /gene="Cfap144"
                     /gene_synonym="3100002J23Rik; Fam183b; Theg6"
                     /note="major polyA site"
ORIGIN      
        1 agaagacgac ctttctcctg gtaagggcag ggcagatagc ttgacttctc agagcaaaaa
       61 catggccatg gcaggacgtg tggggcagat gaagaatcag gatgaagttc accagaatca
      121 gatcttgcgg gaactctttc tcaaagagct acgggcacag aagctgtaca cgcagtatca
      181 cgtgaatccc ctgcgcaagg ttcacacaat taccaggaag cccatgtctt ggcatgataa
      241 cttggaggag ccagaagatg ccaagttcct gaacctcatt caccatgctg cacagggtcc
      301 aaaaaagaaa tattcagaga cacagaccga agcccaagaa attggatggg acccaaatcc
      361 cttgatcaac ccagaccgtc aggaccatag gctgaaccac ttcagagtct accacgacat
      421 cactctgtac aaggctaaac tgtggagctt gggggaagac gatcaccaga agtgacattc
      481 tcttggtgga gtgaacctgc acactgaatt ccccagtgta tgtgtttcct agagaaataa
      541 atgctacttc agtcaaaatc ta
//
