LOCUS       NM_173775               2141 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus cilia and flagella associated protein 100 (Cfap100),
            mRNA.
ACCESSION   NM_173775 XM_001479575 XM_001479586 XM_001480389 XM_001480392
VERSION     NM_173775.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   van der Zwaag,B., Burbach,J.P., Scharfe,C., Oefner,P.J.,
            Brunner,H.G., Padberg,G.W. and van Bokhoven,H.
  TITLE     Identifying new candidate genes for hereditary facial paresis on
            chromosome 3q21-q22 by RNA in situ hybridization in mouse
  JOURNAL   Genomics 86 (1), 55-67 (2005)
   PUBMED   15953540
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Garcia-Frigola,C., Burgaya,F., Calbet,M., Lopez-Domenech,G., de
            Lecea,L. and Soriano,E.
  TITLE     A collection of cDNAs enriched in upper cortical layers of the
            embryonic mouse brain
  JOURNAL   Brain Res Mol Brain Res 122 (2), 133-150 (2004)
   PUBMED   15010206
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC163346.3.
            
            On or before Aug 1, 2009 this sequence version replaced
            XM_001479575.1, XM_001479586.1, XM_001480389.1, XM_001480392.1,
            NM_173775.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.151710.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-102               AC163346.3         72965-73066
            103-208             AC163346.3         73902-74007
            209-289             AC163346.3         81989-82069
            290-390             AC163346.3         83735-83835
            391-583             AC163346.3         85553-85745
            584-651             AC163346.3         87417-87484
            652-815             AC163346.3         87570-87733
            816-896             AC163346.3         87986-88066
            897-1078            AC163346.3         88419-88600
            1079-1117           AC163346.3         89054-89092
            1118-1247           AC163346.3         89169-89298
            1248-1296           AC163346.3         91795-91843
            1297-1448           AC163346.3         91952-92103
            1449-1584           AC163346.3         94354-94489
            1585-1790           AC163346.3         95222-95427
            1791-1884           AC163346.3         96002-96095
            1885-2141           AC163346.3         97453-97709
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 40.16 cM"
     gene            1..2141
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /note="cilia and flagella associated protein 100"
                     /db_xref="GeneID:243538"
                     /db_xref="MGI:MGI:2141635"
     exon            1..102
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            103..208
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            209..289
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            290..390
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            391..583
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            584..651
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            652..815
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            816..896
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            897..1078
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            1079..1117
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1247
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            1248..1296
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            1297..1448
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            1449..1584
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            1585..1790
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            1791..1884
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     exon            1885..2141
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2113..2118
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /note="hexamer: AATAAA"
     polyA_site      2141
                     /gene="Cfap100"
                     /gene_synonym="C030041G11Rik; C230069K22Rik; Ccdc37"
                     /note="major polyA site"
ORIGIN      
        1 gtgagaatag ttgccttggc gtcgcaaacg cagttcagga ccagaagact ggagaattgc
       61 cgaccgaggc ttcggagcaa gctgagtgca cgcggctggt tggcgagaat ctgcttcagc
      121 taaggccaag ctttgcacac cggttggtcc tcagccatgg cgttcaaggc acggtcctct
      181 aggttctccg tgaaaatggt tgaagacaca ggaggcagcc aggatttaat aaacaacagc
      241 ttctcttcct tcattgaaga gaagagcaaa gagtcaaaga aaaacaaagg gaatgtgact
      301 atttctgacc gctcaagtaa ccctttccac atatcaaggg acatggatta ctttttgctc
      361 agagagcagg agcagaatca agctattgca gagcgtgaac aaaagaagat tttgagagtg
      421 caccagaaga tgacctatgc atccaaggta tcggccaagc acactagcct gcgccgggag
      481 ctacagctgg aagatgagat ggaacagcag ctgctgaacg ctgaggccaa ggagatgaac
      541 tgcttccgag aaaacaatga ctggaagctg gccatgaccc gcgaaaggaa gagagagcct
      601 gaaacactga atgactacat ggagaagagg cgaagcatgt tcctcctcca gtatgccctg
      661 gcaatgaagc gcaatgaaat ccagcggctg gaaatgctgg cgacccggga ggagaacagg
      721 ctggagaggg ctgagaagtt cctggagaag gacgcgtcct tgtttgacga gttcctcagg
      781 gagaatgacc gcaactcagt gcaggccatg agaatggctg agaaagagac caagatcaag
      841 acagagaaga tcgttgagat ccgggaactc acagcccaga tcacgagcat caaaagcgaa
      901 atctccaaat ttgaagacac cttgaaacat tacaagatct acaaggagtt cttgtacaag
      961 ttgtcaccca aagagtggct ggatgagcag caggagaagc acctggcttt caaaagggcc
     1021 aaggagtctt cagagctcac caggaacaac agcactgcca tcttattcgg tgacaaagga
     1081 tctggcagta agagcaagac agccttcctg tggaaagagg ttcccggctt gaagaaggtc
     1141 acaaagactg ggcggcttgt aaaggcacta tcatctagca ttcagagcct cccgcaggtc
     1201 ggtcagctca cccagctcag cccgcacagc gagctggact ccagactgtc aagcaccatg
     1261 tttccatcac aagacgacac tgacagcgat ggggaggagc tggcactata cttcactgag
     1321 ccccagcagc tcttagacgt cttcacaaag ctagaggaag agaacttgtc gctgattcag
     1381 aacacgcagg agatggagga gaccttggat gaactgaacg tcactctgaa aaacacccag
     1441 atccgcatgg acaaggaggt caaccttctg aagcagtgga ttgcctccat gatgatatca
     1501 atctccaagg aggaagagtc agccgcagaa ctggagctca aagcccgagt cttccacttt
     1561 ggggagtatc agggtgacca gcaggacacg atgttggaga gcctgaacca caaggtgctg
     1621 gaagtctacc ggaaatgtgt gggcatgcag caggaggcca acttgggcac agtgcagatg
     1681 ctgactgtgg tggagcgtca gctggatgaa ctgctggaga atctagagcg agtgcctcag
     1741 gtcaagattg agcaggctga gaaggccaag gagagggagc ggcgcatgag gcttcgtgaa
     1801 gagaaggcca tgatgcagaa gcagctgcag gaggaacgtc tgcaacgggc tcgagccagg
     1861 gcccaggcta aaataaagaa gaagagaggc cggaaattga taagccgttc ccatccacca
     1921 gtcatcaaag tgaaggaggt gcgtgaacag acgctgatca acaaggacaa ggaggagatg
     1981 ctcttcttct tcacttagca gcagagctgg ctgtgggctc gggaagaagt cagcaggaag
     2041 tgcagacagg gactgtgagc ctgaggggtt cctaactcca tctcatactt tcctgtcagc
     2101 ctccttacag gaaataaaac catgtctctt gggagtctga a
//
