LOCUS       XM_011245588            4470 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ceramide kinase (Cerk), transcript variant
            X3, mRNA.
ACCESSION   XM_011245588
VERSION     XM_011245588.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000081.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011245588.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4470
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="15"
     gene            1..4470
                     /gene="Cerk"
                     /gene_synonym="D330016D08Rik; mKIAA1646"
                     /note="ceramide kinase; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 12 mRNAs, 11 ESTs, 571
                     long SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 47 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:223753"
                     /db_xref="MGI:MGI:2386052"
     CDS             599..2041
                     /gene="Cerk"
                     /gene_synonym="D330016D08Rik; mKIAA1646"
                     /codon_start=1
                     /product="ceramide kinase isoform X3"
                     /protein_id="XP_011243890.1"
                     /db_xref="GeneID:223753"
                     /db_xref="MGI:MGI:2386052"
                     /translation="MGAMGAAEPLHSVLWVKRRRCAVSLEPARALLRWWRSPEPGPSA
                     PGADARSVLVSEIIAVEEKDDCEKHASSGRWHKMENPFAFTVHRVKRVRHHRWKWARV
                     TFWSADEQLCHLWLQTLRGLLESLTSRPKHLLVFINPFGGKGQGKRIYEKTVAPLFTL
                     ASITTEIIITEHANQAKETLYEINTDSYDGIVCVGGDGMFSEVLHGVIGRTQQSAGID
                     PNHPRAVLVPSTLRIGIIPAGSTDCVCYSTVGTNDAETSALHIIIGLKTFLSHQYYEG
                     TLSFLPAQHTVGSPRDNKPCRAGCFVCRQSKQQLEEEEKKALYGLENAEEMEEWQVTC
                     GKFLAINATNMSCACPRSPGGLSPFAHLGDGSSDLILIRKCSRFNFLRFLIRHTNQED
                     QFDFTFVEVYRVKKFHFTSKHVEDEDNDSKEQEKQKFGKICKDRPSCTCSASRSSWNC
                     DGEVMHSPAIEVRVHCQLVRLFARGIEEES"
ORIGIN      
        1 ctaacctgca ggactcttgc tagccgccag gagaccaaga cctaaaaaga gacggatgcc
       61 caaggtcaaa tcgctcctgg gcgcacacca gcagttccac ggcctcctat cgcctgccca
      121 ggaccgcccg ggcaacattt ctgcgctgct gggactccgc ccgtcccttt gcagccctcc
      181 ctaccccgtc gctcgtgcag acccagcagg acccaggggc agccagagcg acagactagt
      241 gtctttcagg gcacccggcc gctccgaccg ccctccccac agccaggtcc ctcagtcccc
      301 tcctctgacc cctccctccc gttccttcct aggccttttc tgctcctcat cctaggctcc
      361 ctagactcct ctgtttctga ttcttctctg gccccaagtc tagcttctcc tgtcctcacc
      421 ctggtcgcct cctcccgggt ccccgccacc ctctctgcgt accgggtgac gcagcgccgc
      481 ctcccgctcc cgcctccccg cgtcaccgcc gggcagactg caggggccgc taacggtccc
      541 gcgccccccc cggtgtccgc gcgccccgcg cccggcggac gaggccgcgc cggcggcgat
      601 gggggcaatg ggggcggcgg agccgctgca ctccgtgctg tgggtgaaac ggcgacgctg
      661 tgccgtcagc ctggagcccg cgcgggctct gctacgctgg tggcggagcc cggagcccgg
      721 gccctccgcg ccgggtgccg atgcccgctc ggtactggtg tcggagatca tcgctgttga
      781 ggaaaaagac gactgcgaga aacacgcctc cagtggccga tggcataaaa tggaaaatcc
      841 gttcgcattc acagtccacc gtgtgaagcg agtacgacat caccgctgga agtgggcacg
      901 ggtgaccttc tggagcgccg acgagcagct gtgtcacctg tggctgcaga ccctccgtgg
      961 gctgctggag agcctgactt caagaccgaa gcacttgctg gtattcatca accctttcgg
     1021 agggaaaggt cagggcaagc gcatctatga aaaaacagtg gcgcctctgt ttaccttggc
     1081 ttccatcact acggagatca tcattacaga gcatgccaac caagccaagg agactttata
     1141 cgagatcaac acagacagct atgatggcat cgtgtgcgta ggtggggacg gcatgttcag
     1201 cgaggtgctg catggggtga ttgggaggac gcagcagagc gctggtatcg accccaatca
     1261 cccccgagcc gtgctggtgc ccagtaccct caggatcggc atcatacccg cagggtccac
     1321 agattgtgtg tgttactcaa cagtgggcac aaacgacgca gagacatcgg ctttgcacat
     1381 cattattggg ttgaagacct ttctctctca tcagtactat gaagggacac tgtccttcct
     1441 cccagcacag cacacggtgg gatctccacg ggacaataaa ccctgccggg ctgggtgctt
     1501 cgtgtgcagg cagagcaagc aacagctgga agaagaagag aagaaagccc tgtatggcct
     1561 ggagaacgcc gaggaaatgg aagagtggca agtgacatgt gggaagttcc tggccatcaa
     1621 tgccaccaac atgtcctgtg cttgtcctcg gagccctggg ggcctgtccc catttgccca
     1681 tctgggagat gggtcttctg acctcatcct tatccggaag tgctccaggt tcaacttcct
     1741 gagattcctc atccggcaca cgaaccagga ggaccagttc gacttcactt tcgttgaagt
     1801 ttatcgagtc aagaaattcc acttcacgtc gaagcacgtg gaagacgagg acaatgactc
     1861 gaaggaacaa gagaagcaga agtttgggaa gatctgcaag gacagaccct cttgcacttg
     1921 ctcagcctcc agaagctcct ggaactgcga tggcgaagtc atgcacagcc cggccattga
     1981 ggtcagggtc cactgccagc tggtgcgcct ctttgctcgg ggaatcgagg aagagtcata
     2041 agcaagaacc ccaaagccca ggagctgtcg gccttgagct cggggagtgt ggaaattact
     2101 taagaaaaat tcgacagacc agttatgttg atatatccat ttgaatttag aaatttattt
     2161 ttgataggta aatcttggtt tttagaaaag acagctttgt caacagttct gtatccatac
     2221 ctggtaccct cggccccgct tccgagtcgc ttttcacttc ttctcagcaa atggcacttg
     2281 ctggttccgg gcattggctt cctagatttt agccatgccg accgtgcata tttcaagaca
     2341 gccccttagt gggctacact gcaataattt ttagggacat tataatatga ctacgtccca
     2401 ggaatcaggt tacaccatct ggtcacatgg gtaaaacccg gtcaccttga cccctttggt
     2461 gggacttcct ctggaattgt ccgtggccag gtttgggaag gtaaatagct gtcttggcct
     2521 ccgctttaca cacaccttca tttacgatca ggacgtcgct atgtggccct tgctgcacac
     2581 cacaactgac tcagcgaggt cctccgcaca gccatgcctg cagagcaggg ccatgtcaca
     2641 gcgagaagac acccagggtg acgtctcatc ctcaggatcc cccacgtctg ctgccatcac
     2701 agccgcatcc cgtgagacaa ttcagcaaag cgcccacttg gaagcttcat tctgtcagcc
     2761 ctggtagcct gcacaccctg gccaaggcag tctgaagcac tggctaagag gaggctccat
     2821 ttggaatcaa agcacttcta cagctgggtt ttgaaagagg tagggggtgg cggggacaga
     2881 gagtcactga cacacacaga gggtactcgg tgagttcgat accaccctca acctgactgt
     2941 caccagcgaa tggtgggtga tctcgggtca cccccaggta ctctggtgca agccttatgt
     3001 ctactcctgg ttccacatcc attcttccgc actgtggatt ctgttcttat tcatagcttt
     3061 ctccctatcc atcacgtctt ggctatttgc tctgtctcca caagggggcg ctaagctgct
     3121 caggccgaag ccctgggcgc atgaccagtt ttcctctgaa ggcattccca acccaggggc
     3181 ttctcggcca catactatgg cctgtgctgt gtctccagat ggatgcatct gaaatgtgta
     3241 taaaagggtt ttatgtgaaa ttcaggccta cacagcttaa acttgacttg caaacgggga
     3301 agggcactga ctgttacaag agctggtttt aggttctgca ctgggggaag tgtgcatctc
     3361 gtgctggtcc agttactcgc tacagaattc tgcaggccac acggctttcc aggtcctctt
     3421 gcactgactt ctgtttcgag gcatacacaa aatcctctgt ttagtattca gtcccatcca
     3481 gacaaaagag cagctgtaaa ggcggccatg ttcagggacc actttaaagg cagttgtgcg
     3541 gcggtgctat ttaatgattg tcgagtagaa agctggctag aaagagtaaa tgaactagca
     3601 gtttctatcc agatctgtcc ctggatgggc agagcccaaa ggtgccagcc tagcagctct
     3661 gtgagtaggt aggcagccct ggagcagcgt gagggccgat gctcagttgt ccacctcaat
     3721 gtggcccctc gcccccggca ttccagaggg ggctcagggc ccgaggcagc tgtgggtgcc
     3781 cctggatctc aggaattgca ctgtcctcca aggactcagg tcttcactga ccttgctaca
     3841 tgatacccac gccctggtcc acccctgccg ctgccagggc tggaggagag atgcagtcag
     3901 aggatgcttt gccggtgctt agcagtgcaa gccacgctcg gaatctccaa ccccggcgca
     3961 gtcatggagc atcatgagtg tcagacactt agggcccttg acacggctgc gcaggattgg
     4021 gggggggggc gtgctgacat tcacaagcag tagacagtct tcatgatgct ttttagatgc
     4081 aataccccaa acttcccggg tcttaggtat tttaggagga aaaaacaggg gtaaaggtta
     4141 gacagtggca acttaggatc ctgttagggt ctggcccatg ttttaactcc cactggtgca
     4201 taccaattag gcaacagtca taagctgtaa cttatttttg tttatggaaa ctaagtagtg
     4261 ggaacgggga ccggggagcg gctggtttcc cagaggatgc ttcagccaat gcaatctcct
     4321 ggagctggga gcactgactg ggagcactga cacaagaatg gcccaattat gcctcctggt
     4381 cttgctggct tcaagattag aaagtggcat atttgatctg gtatatttga gaagacaaaa
     4441 aaaataataa taaagttact ttgggcagac
//
