LOCUS       NM_177673               3642 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus centrosomal protein 104 (Cep104), transcript variant
            1, mRNA.
ACCESSION   NM_177673
VERSION     NM_177673.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3642)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3642)
  AUTHORS   Crisci,A., Raleff,F., Bagdiul,I., Raabe,M., Urlaub,H., Rain,J.C.
            and Kramer,A.
  TITLE     Mammalian splicing factor SF1 interacts with SURP domains of U2
            snRNP-associated proteins
  JOURNAL   Nucleic Acids Res 43 (21), 10456-10473 (2015)
   PUBMED   26420826
REFERENCE   3  (bases 1 to 3642)
  AUTHORS   Munton,R.P., Tweedie-Cullen,R., Livingstone-Zatchej,M.,
            Weinandy,F., Waidelich,M., Longo,D., Gehrig,P., Potthast,F.,
            Rutishauser,D., Gerrits,B., Panse,C., Schlapbach,R. and Mansuy,I.M.
  TITLE     Qualitative and quantitative analyses of protein phosphorylation in
            naive and stimulated mouse synaptosomal preparations
  JOURNAL   Mol Cell Proteomics 6 (2), 283-293 (2007)
   PUBMED   17114649
REFERENCE   4  (bases 1 to 3642)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
REFERENCE   5  (bases 1 to 3642)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL806525.23.
            
            On Mar 30, 2023 this sequence version replaced NM_177673.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK149826.1, BC046331.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-406               AL806525.23        24432-24837
            407-558             AL806525.23        28184-28335
            559-732             AL806525.23        30411-30584
            733-871             AL806525.23        30874-31012
            872-934             AL806525.23        32304-32366
            935-1020            AL806525.23        32829-32914
            1021-1189           AL806525.23        34139-34307
            1190-1348           AL806525.23        34555-34713
            1349-1564           AL806525.23        35999-36214
            1565-1759           AL806525.23        37646-37840
            1760-1927           AL806525.23        38364-38531
            1928-2101           AL806525.23        39015-39188
            2102-2278           AL806525.23        42058-42234
            2279-2491           AL806525.23        42710-42922
            2492-2599           AL806525.23        43645-43752
            2600-2636           AL806525.23        44675-44711
            2637-2703           AL806525.23        45512-45578
            2704-2812           AL806525.23        46101-46209
            2813-2951           AL806525.23        51505-51643
            2952-3019           AL806525.23        51768-51835
            3020-3110           AL806525.23        55406-55496
            3111-3642           AL806525.23        55930-56461
FEATURES             Location/Qualifiers
     source          1..3642
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 83.78 cM"
     gene            1..3642
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /note="centrosomal protein 104"
                     /db_xref="GeneID:230967"
                     /db_xref="MGI:MGI:2687282"
     exon            1..406
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            407..558
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     CDS             446..3226
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /note="isoform 1 is encoded by transcript variant 1;
                     glycine-, glutamate-, thienylcyclohexylpiperidine-binding
                     protein; centrosomal protein of 104 kDa; likely ortholog
                     of H. sapiens glycine-, glutamate-,
                     thienylcyclohexylpiperidine-binding protein"
                     /codon_start=1
                     /product="centrosomal protein of 104 kDa isoform 1"
                     /protein_id="NP_808341.1"
                     /db_xref="CCDS:CCDS19005.1"
                     /db_xref="GeneID:230967"
                     /db_xref="MGI:MGI:2687282"
                     /translation="MPHKIGFVVVSSSGHEDGFSARELMIHAPTVSGWRSPKFCQFPQ
                     EIVLQMVERCRVRKLQLLAHQYMISSKVEFYISESLPEYLVPYQAERFRRLGYVSLCD
                     NEKTGCKARELKSVYVDAVGQFLKLIFHQNHANKYNIYNQVALVAINIIGDPADLGDE
                     SNITSREKLIDHYLGHSPHNPEDPALDGTFSGRSDYISPLDDLAFDMYQDPEVAQIIR
                     RLDERKREAVKKERYDHAKKLKQAIADLQKVGERLGRYEVEKRCAVEKEDYDLAKEKK
                     QQMARYRAQVYEQLELHGLLQGEPEMQRPFALPLQPLASPSSPQHWKAVSSLPRTEKL
                     VAEDSFAGPVLQEKPSASSPQHSAVDPSPPAAGHAPRSHTEVLPYDERPLPVTRKQLG
                     EASAEAEVKEADSDVRRRGVAGEPEPLTEKALREASAAIDTLGEALVAGAYSKMWSCR
                     EDALLALYKKLMEMPVGTQKEDLKNMLRASVFLIRRAIKDIVASVFQASLKLLKMIIT
                     QYIPKHKLGKLDTTHCVERAFPLLLARAGDSSARLRVMALNFIQEMALFKEVKSLQLI
                     PSYLVQPLKANASVHLAMSQVDLLARLLRDLGTESSGFTVDNVMKFAVSALEHRVYEV
                     RETAVRIILDMYRQHPALTLEHLPPDDSATRRNLLYKAIFEGFAKIDGSVLPTEAEVR
                     AQKRVATKEAEKQKKEEMKALQGQSGELRETQAGVQEKESEAVKLRNQDPQGRKAVLP
                     DTPEIPANHFLDNLCIFCGERNESFTEEGLDLHYWKHCLMLTRCDHCRQVVEISSLTE
                     HLLTECDRRDGFGKCPRCSEAIPKEELPGHIKTKECSPAKPEKVANHCPLCHENFAPG
                     EEAWKVHLMGPAGCTMNLRKTHVLYKATAPQQGKGPAAAKSSTSAPKVGSKIPTPKGG
                     LSKSSSRTYMRR"
     exon            559..732
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            733..871
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            872..934
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1020
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            1021..1189
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            1190..1348
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            1349..1564
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            1565..1759
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            1760..1927
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            1928..2101
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            2102..2278
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            2279..2491
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            2492..2599
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            2600..2636
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            2637..2703
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            2704..2812
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            2813..2951
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            2952..3019
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            3020..3110
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     exon            3111..3642
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3622..3627
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /note="hexamer: AATAAA"
     polyA_site      3642
                     /gene="Cep104"
                     /gene_synonym="A930027E11; Kiaa0562; mKIAA0562"
                     /note="major polyA site"
ORIGIN      
        1 gcgggccggc ctggttgcta tgggagcgca gctgcggccc gggccctggg cagaggcagc
       61 ccgggctgct cctctgctgc cctcctcaga ggcccggggt gggggcggct ggaccgagac
      121 ccctccgaag atagcggagg ccgacatcgc agcggccccg cctggtcgtt tccgcggcgc
      181 tctgtgaccc tgcgtggcct cggtcttcgg caggcacccg gggcggaggc tccctgacac
      241 ctggccttgg agggactgcg cggccagtgc ctgttccagg cctccctgca gcgcatctca
      301 gccttcgtgt ccggaatcgg attcgagccc cgccttgtcc tcgtctgcat gcgttactga
      361 acaggagcag ttgccacgag actaaagact gtagctctgg ctccggagct cttccctgct
      421 cttctggaca gccagtgtgt gcagaatgcc ccacaagatt ggatttgtag tggtcagctc
      481 ctctggacat gaagatggct tcagtgcccg agaactaatg atccacgcac caaccgtcag
      541 tgggtggaga tcaccaaaat tctgccagtt tccacaagaa atcgttctcc agatggtgga
      601 gaggtgtcga gtaagaaagc tgcagttact tgctcaccag tacatgatct ctagcaaagt
      661 cgagttctac atcagtgaaa gcctgcctga gtacttggtg ccataccaag cagagaggtt
      721 ccgcagactg ggctatgtct ccctctgtga taatgagaag acaggctgca aagcccggga
      781 gctcaagtct gtttatgtgg atgctgtggg gcagtttctt aaactgattt ttcaccaaaa
      841 ccatgccaac aaatacaaca tatataatca ggtggctttg gttgcaataa atatcattgg
      901 agaccctgca gatctgggtg atgaaagcaa tattacctct agggagaagc tgatcgacca
      961 ctacctgggc cacagtcccc acaatcctga ggacccagcc ctagatggaa ctttctctgg
     1021 gcgatctgac tacatctctc cacttgatga cttggctttt gacatgtacc aagaccctga
     1081 agttgcccag atcatccgca ggctggatga aaggaaacgg gaagctgtca agaaggagcg
     1141 ctatgaccat gcaaagaaac tgaagcaagc gatcgctgac ttgcagaagg tcggtgagcg
     1201 cctagggcgc tatgaagtgg agaagcgctg tgcggtggag aaggaagact acgatctggc
     1261 caaggagaag aaacagcaga tggctcgcta ccgtgcccag gtgtacgaac agctggaact
     1321 acatggcctt ctgcagggcg agccagagat gcagaggcca ttcgccttgc ccctccagcc
     1381 ccttgcatct cccagcagtc cccagcactg gaaggccgtg tcctcactcc ctcgcacaga
     1441 aaagctggta gctgaagact cgtttgctgg ccctgtcctc caggagaagc cctcagcatc
     1501 ttctcctcag cattcagcag tggacccgtc cccacctgct gcaggccacg ccccaaggag
     1561 ccatacggaa gtcctgccct atgatgaacg gcctcttcct gttactcgga agcagttggg
     1621 ggaagcatct gcagaggcag aagtgaaaga ggcagacagt gatgtccgga ggcggggtgt
     1681 cgcaggggag ccagagccct tgacagagaa ggccttgaga gaagccagtg ctgccatcga
     1741 caccttaggc gaagccttgg tggctggggc ctattctaag atgtggtcct gccgagaaga
     1801 tgcactactg gcgttgtaca agaagctgat ggagatgcct gttggaaccc agaaggaaga
     1861 tttgaaaaac atgctccgag catctgtctt tctcatccga agagccataa aggacattgt
     1921 ggcctcagtc tttcaggctt cattgaaatt gctgaaaatg ataattacac agtatattcc
     1981 caagcacaag ctgggcaaac ttgacacaac gcactgtgtg gagagagctt tcccccttct
     2041 actcgccaga gctggagact cctctgcccg cctccgtgtc atggccttga atttcatcca
     2101 ggaaatggcc ttgtttaagg aggtgaagtc tctccagctc attccgtcct acttggtgca
     2161 gccgctgaag gccaatgctt ccgttcatct ggccatgagc caggtggacc tgctggcccg
     2221 gctgctgaga gacctgggca ccgagagctc aggcttcacg gtggacaatg tgatgaagtt
     2281 tgcagtgagt gccctggagc acagggtgta tgaggtgcga gagacagcgg tcaggatcat
     2341 cctggacatg tacagacagc acccagccct caccctggag cacctccctc cagacgacag
     2401 cgccacacgc aggaaccttc tctacaaagc catctttgag gggtttgcta agatagatgg
     2461 ctctgtctta ccaacggagg ctgaggtgag ggcccagaaa agagtagcca ccaaagaagc
     2521 agaaaagcaa aagaaagaag agatgaaggc tctgcagggc cagtcaggag aactgagaga
     2581 gacccaggct ggagtccagg agaaggagag tgaggctgtg aagctcagga atcaagaccc
     2641 tcaaggaagg aaagctgtcc tacccgacac tccagaaatc ccagctaacc actttttgga
     2701 taatctgtgt atcttttgtg gggagaggaa tgagtccttc acagaagagg gcctggacct
     2761 ccactactgg aaacactgcc tcatgctgac cagatgcgac cactgcaggc aggtggttga
     2821 gatatccagc cttacagaac acctgctgac agaatgtgac agaagggacg gattcgggaa
     2881 gtgcccccgc tgcagcgagg ccatccccaa ggaggaactt cctgggcaca tcaaaactaa
     2941 ggagtgcagc cctgccaagc cagagaaggt ggcgaaccac tgtcccctgt gtcatgagaa
     3001 ctttgctcct ggagaagagg cgtggaaggt tcatctgatg ggccctgctg gctgcacaat
     3061 gaacctgcgc aagacacatg ttctctacaa ggctacagcc ccgcagcaag ggaaaggccc
     3121 agcagcagca aagtcaagca cctcagcacc caaggttgga agcaagatcc ccaccccaaa
     3181 gggaggcctt agtaagagct ccagcaggac atacatgcga cggtgacaga gtttccagtt
     3241 ctgtctctga caggctgtgc aaggttcccc gctctaagcc atgtgtgttg gcatggtgat
     3301 gcagggctcc atgcccactg tcccttggcc tctggtgtcc cagtgtctac tctcacagga
     3361 acagtacatg ttatgaccaa agagcccttt ccagtgtggc cccagtcctg ggcctgtgtc
     3421 agtgctcagg ccaccacaag cacagcacgc acttccccgc tgctgagaag atacacccca
     3481 aacttggagt gcactggtgt cttgcacaca tcaggctttg cacagagctc agctttggtg
     3541 gccatagaag acccacgagc ctgctgtgcc gcctctcatg gtcctgtctg ccaggttgtc
     3601 acaccatata tagcaacaag caataaagga aatcgagcaa aa
//
