LOCUS       NM_001377093             985 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus centromere protein K (Cenpk), transcript variant 4,
            mRNA.
ACCESSION   NM_001377093 XM_017315552
VERSION     NM_001377093.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 985)
  AUTHORS   Tian,T., Chen,L., Dou,Z., Yang,Z., Gao,X., Yuan,X., Wang,C.,
            Liu,R., Shen,Z., Gui,P., Teng,M., Meng,X., Hill,D.L., Li,L.,
            Zhang,X., Liu,X., Sun,L., Zang,J. and Yao,X.
  TITLE     Structural insights into human CCAN complex assembled onto DNA
  JOURNAL   Cell Discov 8 (1), 90 (2022)
   PUBMED   36085283
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 985)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   3  (bases 1 to 985)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   4  (bases 1 to 985)
  AUTHORS   Yamashita,A., Ito,M., Takamatsu,N. and Shiba,T.
  TITLE     Characterization of Solt, a novel SoxLZ/Sox6 binding protein
            expressed in adult mouse testis
  JOURNAL   FEBS Lett 481 (2), 147-151 (2000)
   PUBMED   10996314
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154216.1.
            
            On Dec 13, 2019 this sequence version replaced XM_017315552.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189676.53857.1,
                                           SRR5189673.49278.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-37                AC154216.1         24343-24379         c
            38-188              AC154216.1         22466-22616         c
            189-245             AC154216.1         20631-20687         c
            246-318             AC154216.1         19126-19198         c
            319-365             AC154216.1         17120-17166         c
            366-448             AC154216.1         11074-11156         c
            449-547             AC154216.1         10892-10990         c
            548-674             AC154216.1         10473-10599         c
            675-728             AC154216.1         8014-8067           c
            729-985             AC154216.1         3728-3984           c
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 56.42 cM"
     gene            1..985
                     /gene="Cenpk"
                     /gene_synonym="B130045K24Rik; C530004N04Rik; Cenp-K; Solt;
                     Solzt"
                     /note="centromere protein K"
                     /db_xref="GeneID:60411"
                     /db_xref="MGI:MGI:1926210"
     exon            1..37
                     /gene="Cenpk"
                     /gene_synonym="B130045K24Rik; C530004N04Rik; Cenp-K; Solt;
                     Solzt"
                     /inference="alignment:Splign:2.1.0"
     exon            38..188
                     /gene="Cenpk"
                     /gene_synonym="B130045K24Rik; C530004N04Rik; Cenp-K; Solt;
                     Solzt"
                     /inference="alignment:Splign:2.1.0"
     CDS             72..887
                     /gene="Cenpk"
                     /gene_synonym="B130045K24Rik; C530004N04Rik; Cenp-K; Solt;
                     Solzt"
                     /note="isoform 3 is encoded by transcript variant 4;
                     SoxLZ/Sox6 leucine zipper binding protein in testis"
                     /codon_start=1
                     /product="centromere protein K isoform 3"
                     /protein_id="NP_001364022.1"
                     /db_xref="GeneID:60411"
                     /db_xref="MGI:MGI:1926210"
                     /translation="MSENKQEVHPDTITDVEAVIDTEEELIKECEEMWKDMEDCQNKL
                     SLIGTETLTNADAQLSLLIMQMKCLTAELGQWKKRKPEIIPLNEDVLLTLGKEEFQKL
                     RCDLEMVLSTIQSKNEKLKEDLEREQQWLDEQQQILDTLNVLNSDVENQVVTLTESRI
                     FNELTTKIRGIKEFKEKLLLTLGAFLDNHFPLPEASTPKKRKNIQDSNAQLITLNEIL
                     EMLINRMFDVPHDPYVKIRDSFWPPYIELLLRYGIALRHPEDPSQIRLEAFHQ"
     exon            189..245
                     /gene="Cenpk"
                     /gene_synonym="B130045K24Rik; C530004N04Rik; Cenp-K; Solt;
                     Solzt"
                     /inference="alignment:Splign:2.1.0"
     exon            246..318
                     /gene="Cenpk"
                     /gene_synonym="B130045K24Rik; C530004N04Rik; Cenp-K; Solt;
                     Solzt"
                     /inference="alignment:Splign:2.1.0"
     exon            319..365
                     /gene="Cenpk"
                     /gene_synonym="B130045K24Rik; C530004N04Rik; Cenp-K; Solt;
                     Solzt"
                     /inference="alignment:Splign:2.1.0"
     exon            366..448
                     /gene="Cenpk"
                     /gene_synonym="B130045K24Rik; C530004N04Rik; Cenp-K; Solt;
                     Solzt"
                     /inference="alignment:Splign:2.1.0"
     exon            449..547
                     /gene="Cenpk"
                     /gene_synonym="B130045K24Rik; C530004N04Rik; Cenp-K; Solt;
                     Solzt"
                     /inference="alignment:Splign:2.1.0"
     exon            548..674
                     /gene="Cenpk"
                     /gene_synonym="B130045K24Rik; C530004N04Rik; Cenp-K; Solt;
                     Solzt"
                     /inference="alignment:Splign:2.1.0"
     exon            675..728
                     /gene="Cenpk"
                     /gene_synonym="B130045K24Rik; C530004N04Rik; Cenp-K; Solt;
                     Solzt"
                     /inference="alignment:Splign:2.1.0"
     exon            729..985
                     /gene="Cenpk"
                     /gene_synonym="B130045K24Rik; C530004N04Rik; Cenp-K; Solt;
                     Solzt"
                     /inference="alignment:Splign:2.1.0"
     regulatory      960..965
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cenpk"
                     /gene_synonym="B130045K24Rik; C530004N04Rik; Cenp-K; Solt;
                     Solzt"
                     /note="hexamer: AATAAA"
     polyA_site      985
                     /gene="Cenpk"
                     /gene_synonym="B130045K24Rik; C530004N04Rik; Cenp-K; Solt;
                     Solzt"
                     /note="major polyA site"
ORIGIN      
        1 gtgttgacga gagcgctgag gaggccggag gactgaatag ttgcagtaag gtgaagaaaa
       61 ctataaagga tatgtcagag aataaacaag aagtacatcc agatactatt acagatgtgg
      121 aagctgttat agatacagag gaagaactta ttaaagaatg tgaagaaatg tggaaagaca
      181 tggaagattg tcagaataaa ttatcactta ttggaactga gacactcacg aatgcagatg
      241 ctcagctctc attacttatt atgcaaatga aatgtttgac tgctgaactt ggtcaatgga
      301 agaaaagaaa acccgaaata attcccctaa atgaagacgt tttgttaaca ttaggaaaag
      361 aagagttcca aaaattgaga tgtgatcttg aaatggtact atctaccatt caatcaaaga
      421 atgaaaagtt aaaagaagac ttagaaaggg agcaacagtg gttggatgaa cagcagcaaa
      481 tactggacac tcttaacgta ttaaacagtg atgtggaaaa tcaggtggta acattaactg
      541 agtcaagaat ctttaatgaa ctgacaacta agatccgtgg gataaaggaa ttcaaggaga
      601 agctcttgct taccttgggt gcttttttag acaatcattt tcctctgcct gaagcaagta
      661 ctccaaagaa aaggaaaaac attcaagact cgaatgcaca gctgataaca ctgaatgaaa
      721 tattagagat gcttataaat agaatgtttg atgttccaca tgatccatat gttaaaattc
      781 gtgattcctt ttggccacca tatattgagc tacttctgcg ttacggaatt gctttgagac
      841 atccagaaga tccatcccaa ataaggttag aagctttcca tcagtaaaat gatgacctgt
      901 tttcacacag tacggaatct ttacacccat ggataaagaa aacacaattt tactgtttaa
      961 ataaagaata ttgtttgcaa atcaa
//
