LOCUS       NM_001374703            4422 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus CUGBP, Elav-like family member 5 (Celf5), transcript
            variant 5, mRNA.
ACCESSION   NM_001374703 XM_011243472
VERSION     NM_001374703.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4422)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4422)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC159474.9.
            
            On Oct 9, 2019 this sequence version replaced XM_011243472.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219379.47074.1,
                                           SRR7652917.884569.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-239               AC159474.9         93177-93415
            240-322             AC159474.9         98925-99007
            323-374             AC159474.9         104519-104570
            375-503             AC159474.9         105119-105247
            504-583             AC159474.9         106353-106432
            584-730             AC159474.9         107745-107891
            731-872             AC159474.9         108579-108720
            873-1019            AC159474.9         108805-108951
            1020-1082           AC159474.9         109847-109909
            1083-1163           AC159474.9         111456-111536
            1164-1307           AC159474.9         113064-113207
            1308-4422           AC159474.9         113535-116649
FEATURES             Location/Qualifiers
     source          1..4422
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 39.72 cM"
     gene            1..4422
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /note="CUGBP, Elav-like family member 5"
                     /db_xref="GeneID:319586"
                     /db_xref="MGI:MGI:2442333"
     exon            1..239
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /inference="alignment:Splign:2.1.0"
     CDS             95..1435
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /note="isoform 5 is encoded by transcript variant 5;
                     bruno-like 5, RNA binding protein"
                     /codon_start=1
                     /product="CUGBP Elav-like family member 5 isoform 5"
                     /protein_id="NP_001361632.1"
                     /db_xref="CCDS:CCDS88058.1"
                     /db_xref="GeneID:319586"
                     /db_xref="MGI:MGI:2442333"
                     /translation="MKDLDAIKLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHT
                     GVHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGM
                     LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ
                     TMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQT
                     TVLSTSGSYLSPGVAFPPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTAAVPGLM
                     APIPNGFPGVLPFPGSHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPT
                     AAIAPVAHSVPQPPHLLQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKV
                     FMDRATNQSKCFGFVSFDHPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY"
     exon            240..322
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /inference="alignment:Splign:2.1.0"
     exon            323..374
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /inference="alignment:Splign:2.1.0"
     exon            375..503
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /inference="alignment:Splign:2.1.0"
     exon            504..583
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /inference="alignment:Splign:2.1.0"
     exon            584..730
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /inference="alignment:Splign:2.1.0"
     exon            731..872
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /inference="alignment:Splign:2.1.0"
     exon            873..1019
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /inference="alignment:Splign:2.1.0"
     exon            1020..1082
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1163
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /inference="alignment:Splign:2.1.0"
     exon            1164..1307
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /inference="alignment:Splign:2.1.0"
     exon            1308..4422
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4360..4365
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /note="hexamer: AAGAAA"
     polyA_site      4387
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
     regulatory      4396..4401
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /note="hexamer: AATAAA"
     polyA_site      4422
                     /gene="Celf5"
                     /gene_synonym="4930565A21Rik; Brunol5"
                     /note="major polyA site"
ORIGIN      
        1 gctgacggag tgaagcggcg gcaccacagc tcctgcccgg gcctggccgg tgggcggcag
       61 cgggccggag cgccccgggg cgcggcccga cggcatgaag gacctggacg ccatcaagct
      121 cttcgtgggc cagatcccgc gccacttgca cgaacaggac ctcaagccgc tgttcgagca
      181 gttcggccgc atctacgagc tgacggtgct caaggacccg cacaccggcg tgcacaaagg
      241 ctgtgccttc ctcacatact gcgccaggga ctctgccatc aaagctcaga cagccttgca
      301 cgagcagaag accctgccag ggatggcgcg gccgatccag gtgaaaccgg cagacagtga
      361 aagccgtgga ggtagggacc ggaagctgtt cgtgggtatg ctcaacaagc agcagtcaga
      421 ggaagacgtg ctcaggctct tccagccctt tggcgtcata gacgagtgca cagtgcttcg
      481 aggaccagat ggcagcagca aaggctgtgc cttcgtgaag ttttcttccc acacagaggc
      541 ccaggctgcc atccatgcct tgcatggcag ccagactatg ccgggagcgt cctccagcct
      601 ggtggtcaag tttgccgaca cggataaaga gcggacattg cggcgtatgc agcagatggt
      661 tggccagctg ggcatcctga cgccgtccct caccctgccc ttcagcccct acagtgccta
      721 cgcccaggct ctcatgcagc aacagacaac agtgttgtcc acctctggca gctacctgag
      781 ccccggtgtg gccttccctc cctgccatat ccagcagatt ggtgccgtca gccttaacgg
      841 tctgcctgcc acgcccatcg ctcctgcctc tgggctacac tcacccccac tgctaggcac
      901 tgccgctgtt cccggcctga tggcgcccat tcccaatggc ttccccggcg tcctgccctt
      961 tcccgggagt caccctgccc tggagactgt gtatgccaat ggccttgtgc cctacccagc
     1021 tcagagcccc actgtggcag agaccctcca tcctgccttc tccggagtcc agcagtacac
     1081 agccatgtat cccaccgcgg ccatcgcgcc cgtggcacac agcgttccgc agcctccgca
     1141 cctcctgcag cagcagcgcg aaggtcccga aggctgtaac ctgtttatct accacctccc
     1201 ccaggagttt ggagacacgg agctgaccca gatgttcctc cccttcggca atatcatctc
     1261 ctccaaggtg tttatggatc gggctaccaa ccagagcaag tgtttcggat tcgtgagctt
     1321 tgaccaccca gccagcgcgc aggcggccat ccaggccatg aacggctttc agattggtat
     1381 gaagaggctg aaggtgcagc tgaagagacc caaagaccca ggacacccgt actgaccacg
     1441 cccacagccc ttcagtgctg tgggtgtggc cccaggtgag ccgccaggcg gccctgtgct
     1501 ctgcccagcc ctggtgtcat tcactctcct cccatcccaa gctcactctc tagattctgg
     1561 gggcgggagt ggcactccaa gaggccaact ggggattcaa accctccccc attaccttgt
     1621 ggcttgggtg gcagagaggg tgggattagg gtggggaaac cgggagagaa agctaggagg
     1681 ttccacccag gggacttcct tcccagggaa agttttgaaa aatgaataga ggttcactac
     1741 agtgaacttc tggtttgggg cttgtggtct ggggtgcagg atgtgatggg cggggcttct
     1801 atcccatcct gtgaagctgc aagccaagaa gccctaatcc agagaaagga tctgtgtcct
     1861 acagttgaac ttggaatgtc cagttaagct tggcccagga ctgaagcaga ggaaatgggg
     1921 acacatcata gccttgtggt cccccacctc tgtccccacc agccagctcc cgtggaccct
     1981 gagagtcctg tcttctaatt tcatgcccag tgggttaaca aacccagagt gtcgcttgca
     2041 ctctcacaaa acaacacaaa gccaaatacc cgaacaaaca agcaaaaaac cccaaaagcc
     2101 aatttcccct tcaatagtct cagcattttc tttgggactg aactgatttt aaaaggtgga
     2161 accaactgca caatgacttc atggaggtga cagctcggct acccagcagc agcagcctac
     2221 agagcaccca ggaatacttt atttttagtg tttttttttt ttttcttttt ttctttcttt
     2281 ttctttttct ttcaccgccc agcccagggc ctggtagaga tcgacagtct ttaatccttc
     2341 agtgtttttt gtccattatc tgggtctttt gggctttatc tattttggct tcgattagga
     2401 aacccacgaa tcaggtagaa acccccggat ggctgccata gttccagttt taacccagtg
     2461 tcctgcggac catctgctct gggctcggga gggaggtacc atgtcaggag caaatgtccc
     2521 cagactgatg gtgactgtca ggaactgttg ttttgaaaac gctggggttt tcttgccagg
     2581 acagagtggg gcaaggtgtt ctgtgcccct cccccctccg ctctactact ccccgatatc
     2641 cccatcctcc ccaggttgag cggttcccgc ttccaaccac tccaggactt ttatgtaaat
     2701 tacagccaag tttggacacc agctctccca gtgaccccct ccccccaaat cccgaagcca
     2761 ccaaaagcca cttgagttac agaaggctcc gtggtgtgtc gtgggacagg gaacaggcgt
     2821 cagagcccgg gtctgagggg cccatacact gccaatcacc cgcccctcgg cttggggaca
     2881 ccccccccac acctgactcg gaggctttcc aggtcagcca gtatccccct tagccaggat
     2941 tccccacccc caacttccta ttccccgtag ctgcgcatag acgtgcgcgc accatagaca
     3001 atatattttt ggagaatgaa ccacagcggc caaactccgt ccaaggaggt ggcactgagc
     3061 cggccaatca tcggggacca aggacagacc agctgaggcc ggctggatgc caaaccagga
     3121 cccccgtcaa caccatatac ctccagtttt tggggtctcc acggctgccg cccccaccct
     3181 gcccctcccg ctttcatagc cttacttggg tgaccaggtg tcctcagctt cctgccaggg
     3241 aagcctcctg tcccccactg cccaaccaga tcgcaccccc accccagccc ctcctccaat
     3301 caccagccgt aaactgaaag tcttgtaccc gagctcaccg tgagtcagac gtggccacac
     3361 cggacccggt tgctgacccc acggattcct ctctcctctc ttctctctct ctcttctcct
     3421 tctcctctcc cttcccctct ctcctctctc atctatctat ctatctatct atctatctat
     3481 ctatctatct atctatctat ctatctatct atgttggtgg tctttttcta agtgagtgcc
     3541 aacaagacca cagagaagag cacgcagggg tgcagggact cactgataat ccgcttttga
     3601 ttcctagttg gaggtttggg aagactttgg tgggggagcc actccttgta tattttaccc
     3661 agcctgccca cacacccacc acaaagcaca gagagtcgtt aatttgaaca tcccaccaag
     3721 agggggtgag ggggtggggg tggggtctga atcccttgcg acaagtccaa aagcaaacaa
     3781 aagagacaac ttttttaagg tttaaaaaag aaaatgtaaa gaaaaaaaaa ttcccttttc
     3841 gtttctacca aaatgtttgt tgactgacct aaattggggg gtggggggaa gcgaacaaca
     3901 acaacaacaa caaaaaacac cctgattctg cccaccttgt ttcgcgtttc cggtttgatg
     3961 atcccttgtt cttaacgtaa cacagtaaaa ctgtgttatg aagtgtgcga acgtgtgtgt
     4021 ccgggatgtc gctgtgtttc ccccccacct ctgccccttg caggttgccc gctgagtgcg
     4081 tgctggcgtg cgctggcgtg cgcaccgtct agttcatgtt tacgagctgt aaataccatt
     4141 tttatactcc acacgagaga ccctatgtga tttgtacaac gggcttaatt tctgctacaa
     4201 tgaatttcgt gaaatttcaa acttcaaaca attttgaaga cgagcagaga gagaaggccg
     4261 agggtggaga gggaatgtgg ggtttgagtc cccgtacctc ctgtttgtgt gcgaagtagc
     4321 gagcttctca acggcaaatc acctctcctt ggtctggaaa agaaaaacga aaaacaaaaa
     4381 cctaaaagtt tatttaataa aagttttact tgttaacagg ga
//
