LOCUS       NM_001177403            1513 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus CCAAT/enhancer binding protein zeta, opposite strand
            (Cebpzos), transcript variant 1, mRNA.
ACCESSION   NM_001177403
VERSION     NM_001177403.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Hansen,G.M., Markesich,D.C., Burnett,M.B., Zhu,Q., Dionne,K.M.,
            Richter,L.J., Finnell,R.H., Sands,A.T., Zambrowicz,B.P. and
            Abuin,A.
  TITLE     Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
  JOURNAL   Genome Res 18 (10), 1670-1679 (2008)
   PUBMED   18799693
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Ko,M.S., Kitchen,J.R., Wang,X., Threat,T.A., Wang,X., Hasegawa,A.,
            Sun,T., Grahovac,M.J., Kargul,G.J., Lim,M.K., Cui,Y., Sano,Y.,
            Tanaka,T., Liang,Y., Mason,S., Paonessa,P.D., Sauls,A.D.,
            DePalma,G.E., Sharara,R., Rowe,L.B., Eppig,J., Morrell,C. and
            Doi,H.
  TITLE     Large-scale cDNA analysis reveals phased gene expression patterns
            during preimplantation mouse development
  JOURNAL   Development 127 (8), 1737-1749 (2000)
   PUBMED   10725249
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154274.1 and AV491230.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Variants 1 and 2 encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CX767561.1, BY718824.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-195               AC154274.1         96996-97190
            196-441             AV491230.1         177-422
            442-1513            AC154274.1         100474-101545
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 49.64 cM"
     gene            1..1513
                     /gene="Cebpzos"
                     /gene_synonym="1110001A16Rik"
                     /note="CCAAT/enhancer binding protein zeta, opposite
                     strand"
                     /db_xref="GeneID:68554"
                     /db_xref="MGI:MGI:1915804"
     exon            1..195
                     /gene="Cebpzos"
                     /gene_synonym="1110001A16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            196..311
                     /gene="Cebpzos"
                     /gene_synonym="1110001A16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            312..356
                     /gene="Cebpzos"
                     /gene_synonym="1110001A16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            357..441
                     /gene="Cebpzos"
                     /gene_synonym="1110001A16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            442..1513
                     /gene="Cebpzos"
                     /gene_synonym="1110001A16Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      745..750
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cebpzos"
                     /gene_synonym="1110001A16Rik"
                     /note="hexamer: AATAAA"
     polyA_site      771
                     /gene="Cebpzos"
                     /gene_synonym="1110001A16Rik"
                     /note="major polyA site"
     regulatory      1491..1496
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cebpzos"
                     /gene_synonym="1110001A16Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1513
                     /gene="Cebpzos"
                     /gene_synonym="1110001A16Rik"
ORIGIN      
        1 tgcgcagtcg ggttgcggag gcctcaggta aggaccgggc agtgtttctt gtcctctgtt
       61 ccccaatgtg tggcgcgtgg ggtctgtgac attcttgggt gtggggaaca ctcgagcgag
      121 cccgccccgc aggcgcagga gcgcgagcgt ttccgggtcg ccgagccgcg acgcatgctg
      181 ggaccaggac cccgggatgg ctcggatcat ggaaccgctg gcgaggaaga tctttaaagg
      241 agtgctagca gctgagcttg tgggtgtcgc tggagcttac tgtctgttta aaaagatgca
      301 ctccagccaa gatttcagac aaacaatgag caagaaattt ccattcattt tggaagttta
      361 ttacaaatcc attgaacagt ctggaatgta tggagttaga gagaaagatg aggaaaaatg
      421 gttgactagc aaaaactaag gccagtcatc tcgctcagct tcccacttga gctgtttgaa
      481 acctttgagg ggagacgaca gatgagtctg tacccgggac tccacagacg ctccctgacc
      541 gtaactgcag gcctgcggct tcccacccac tgtttgctgc tctcctctac tggatagttg
      601 aggaatttac aagtgaaaat ataggattta tactggaaag atttttcttt tctattttat
      661 gaaagaatag aaactagtga ttataacatc aggaataatt acaaagtctt caagcatgtg
      721 agagtacacc tttagctaag tctaaataaa acagacagac tcttgaagaa ataacgtgtg
      781 tgggtctgca gtttgtgtgt gtggtttaaa tgccttgcta tgtgacaaac atcctgccac
      841 taaggacatc ttcagggaag taccatttaa atgacacagg tgacctggta gtgcacttgt
      901 aatcctactg cttgggagga ggaggattta gagcccaagg tcagcctggg ctacgaccct
      961 gctgtaaaaa caacacaaac aaacaaacaa acaaacacca ccagcttact tacttgcatt
     1021 atctctgtta gccatggcgt tcatgccaat agtatcaaac ttggagccca tattctcatc
     1081 cagcagatgg ccaaactgaa aaaagaaagg aagggtgggc aaggctatta ggaaacttga
     1141 aaagaatgta aacagctact ttcttaagtt agtacattag cctcacctcc tcagcagaga
     1201 caaacaggct ggagtcattg aaacttttct tctttttctt ttgtcctaaa gaaaaattat
     1261 gtgtaggtta ctcaaagcat atacttattt ttcagatttg gtccccgatc aatgtttatc
     1321 tttacaagaa accaaaagta tcactcaggc ttaaaattcc acagctgact tggatggagt
     1381 ttgtaatatg tgaaacaaaa tataaattgt aattcatgtc ttattctttg ggcttgaaaa
     1441 gctgattatg tttattgttt tatcagtaaa gttttattta taccactgaa aataaaatgt
     1501 ctataaaaac tca
//
