LOCUS       NM_001024806            4091 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus CCAAT/enhancer binding protein zeta (Cebpz), mRNA.
ACCESSION   NM_001024806
VERSION     NM_001024806.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4091)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4091)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   3  (bases 1 to 4091)
  AUTHORS   Paces-Fessy,M., Boucher,D., Petit,E., Paute-Briand,S. and
            Blanchet-Tournier,M.F.
  TITLE     The negative regulator of Gli, Suppressor of fused (Sufu),
            interacts with SAP18, Galectin3 and other nuclear proteins
  JOURNAL   Biochem J 378 (Pt 2), 353-362 (2004)
   PUBMED   14611647
REFERENCE   4  (bases 1 to 4091)
  AUTHORS   Alonso,C.R., Pesce,C.G. and Kornblihtt,A.R.
  TITLE     The CCAAT-binding proteins CP1 and NF-I cooperate with ATF-2 in the
            transcription of the fibronectin gene
  JOURNAL   J Biol Chem 271 (36), 22271-22279 (1996)
   PUBMED   8703044
REFERENCE   5  (bases 1 to 4091)
  AUTHORS   Hoeppner,M.A., Gilbert,D.J., Copeland,N.G., Jenkins,N.A.,
            Linzer,D.I. and Wu,B.
  TITLE     Cloning and characterization of mouse CCAAT binding factor
  JOURNAL   Nucleic Acids Res 24 (6), 1091-1098 (1996)
   PUBMED   8604343
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY077658.1, AK158771.1, AK017537.1 and AI848081.1.
            
            On May 9, 2006 this sequence version replaced NM_001024806.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK159081.1, SRR1660811.165896.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-24                BY077658.1         1-24
            25-3327             AK158771.1         2-3304
            3328-4074           AK017537.1         958-1704
            4075-4091           AI848081.1         1-17                c
FEATURES             Location/Qualifiers
     source          1..4091
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 49.65 cM"
     gene            1..4091
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /note="CCAAT/enhancer binding protein zeta"
                     /db_xref="GeneID:12607"
                     /db_xref="MGI:MGI:109386"
     exon            1..196
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     CDS             41..3199
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /note="CCAAT-binding factor; CCAAT-box-binding
                     transcription factor"
                     /codon_start=1
                     /product="CCAAT/enhancer-binding protein zeta"
                     /protein_id="NP_001019977.1"
                     /db_xref="CCDS:CCDS28981.1"
                     /db_xref="GeneID:12607"
                     /db_xref="MGI:MGI:109386"
                     /translation="MSADQEPVAFLAKQPWRPKQVTEDPDEEDEEDGDEGKNGFSLEE
                     VLRLGGTKQDYLMLATLDENEEVVDGGKKGTIDDLQQGELESFIQNLNLAKYSKSLIE
                     EDEPEKKENTSKKEAKLLKVENKKQKATEGKKTSEKKVKNKTVPEQRPESCPVSKAKK
                     DKQPDVFEFLERQTMLLRPGGKWYDMEYSGEYSLELQPPDVVSKYKALAQKLYEHEVS
                     LFKSKTNNQKGGSSTWMKAIVSSGTLADRMAAMILLIQDDAVHTLQFVETLMSLVKKK
                     GSKQQCLMALDTFKELLITDLLPDSRKLRVFSQHPFHKLEELSSGNKDSRDRRLILWY
                     YEHQLKHLVAEFVQVLETLSHDSLVTTKTRALVAAHELLCDKPEEEKALLVQVINKLG
                     DPQNRIATKASHLLEVLLRKHPNMKGVVCAEIERLLFRSNISPKAQYYAICFLNQMVL
                     SHEESELANKLITLYFCFFRTCIKKKDIESKMLSAILTGVNRAYPYSQIGDDKVREQV
                     DTLFKVLHVVNFNTSVQALMLLFQVMNSQQTISDRYYTALYRKMLDPGLTTCSKQAMF
                     LNLIYKSLKADIMLRRVKAFVKRLLQVTCTQMPPFICGALYLVSEILKAKPDLRSQLD
                     DHPESDEENFVDVGDDSDDEKFTDADKETATDAVKEVESKETEPESSAEAEKPKAASW
                     VHFDNLKGGKQIKTYDPFSRNPLFCGAENTTLWELKKLSEHFHPSVALFAKTILEGNC
                     IQYSGDPLQDFTLMRFLDRFVYRNPKLHKGKENTDSVVMQPKRKHFMKNVRDLAVNSK
                     EFLAKEESQIPVDEVFFYRYYKKVAVVKDKQKRSADEESIEDIDDEEFENMIDTFEDD
                     NCFPPGKDDIDFASNMKKAKGAKADLEDSESSDGELGDLDDDEVSLGSMNDEDFEIDE
                     DGGTFMDVSDDESEDAPEFADANPKANTKKSKRKSEDDFDFAGSFQGQKKKKKSFNDS
                     SLFVSAEEFGHLLDENMGSKFDTIGMNAMANRDNASFKQLKWEAERDDWLHNRDVKSI
                     IKKKKNFRKKMKAPQKPKRQRK"
     exon            197..1689
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     exon            1690..1921
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     exon            1922..2108
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     exon            2109..2197
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     exon            2198..2251
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     exon            2252..2354
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     exon            2355..2423
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     exon            2424..2490
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     exon            2491..2591
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     exon            2592..2649
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     exon            2650..2834
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     exon            2835..2921
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     exon            2922..2980
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     exon            2981..3062
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     exon            3063..4077
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3215..3220
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /note="hexamer: AATAAA"
     polyA_site      3235
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /note="major polyA site"
     regulatory      3352..3357
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /note="hexamer: ATTACA"
     polyA_site      3368
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
     regulatory      4057..4062
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
                     /note="hexamer: ATTAAA"
     polyA_site      4075
                     /gene="Cebpz"
                     /gene_synonym="Cbf; CBF2"
ORIGIN      
        1 ggaagtaagc tccgggctgc actcgcgtgt ccagcccgcc atgtcggccg accaggaacc
       61 tgtggcgttc cttgccaagc agccctggcg tcccaaacag gtgacagaag atccggatga
      121 ggaagacgag gaggatggcg atgagggcaa gaatggcttc tccctggagg aggtgttacg
      181 cctcggaggc acaaagcaag attaccttat gctggctact ttggatgaaa atgaggaagt
      241 ggtggatggg ggcaaaaagg gaaccattga cgaccttcaa caaggtgaac tggagtcatt
      301 tattcagaat ctgaatttgg ccaaatactc aaagtctttg attgaagaag atgaaccaga
      361 gaaaaaggaa aacaccagca aaaaagaagc aaaactactg aaggtggaga ataaaaaaca
      421 aaaagcaaca gaaggaaaaa agacatcgga aaagaaggtg aaaaataaga ctgtaccaga
      481 acagcgtcct gagagctgtc ccgtctccaa agcaaagaaa gataaacaac ccgatgtgtt
      541 tgaatttcta gagagacaaa caatgttact caggcctgga ggcaagtggt acgacatgga
      601 gtacagcggt gagtattcct tggagctgca gcctccagat gtcgtgtcca agtacaaagc
      661 cctggcccag aagctgtatg agcacgaagt cagcttattc aagagtaaga caaacaatca
      721 aaagggaggc tcttccacct ggatgaaggc catcgtgtca tcagggacac tagctgacag
      781 gatggcggcc atgatccttc taatccagga tgatgctgtc cacactctgc agtttgtaga
      841 aaccctgatg agccttgtga aaaagaaggg cagcaagcag cagtgcctca tggcgttgga
      901 cacgttcaag gagttgctca tcacagacct tctgccagac agtcggaagc tccgggtttt
      961 cagccagcat cctttccaca aactggaaga gttgtccagt ggcaacaagg actcgagaga
     1021 tagaagactg atactgtggt attatgaaca ccaattgaaa cacttggtag cagaattcgt
     1081 ccaggtcctc gagactttaa gtcatgattc cttggtaacc actaaaacgc gggccctggt
     1141 agctgcccat gagctgctct gtgataaacc cgaggaggaa aaggctcttc ttgtgcaggt
     1201 gataaataag ctgggagatc ctcagaacag aattgctacg aaagcctccc atctgttaga
     1261 agtgttactt cggaagcatc ccaatatgaa aggagttgtg tgtgcagaaa tagaaaggct
     1321 actcttccgc tcaaatatca gccccaaagc tcagtattat gcaatttgct ttctaaacca
     1381 aatggtcctc tcccatgaag aaagtgagtt ggctaacaaa ttaattactc tttatttttg
     1441 tttctttcgg acttgtatca agaaaaaaga cattgaatca aaaatgctca gtgcgatttt
     1501 aacaggggtg aacagagcat acccttactc ccagataggt gacgacaaag tgagggagca
     1561 ggtggacact ttattcaaag tgttgcatgt tgtaaatttt aatacgagtg tgcaggcttt
     1621 aatgctactt ttccaagtaa tgaattctca acagacaata tctgaccgat attacacagc
     1681 tttatacaga aagatgttgg atccaggcct gacgacatgt tccaagcaag cgatgtttct
     1741 caacctgatc tacaaatctt tgaaagctga catcatgctg cgccgggtga aggcgtttgt
     1801 gaagaggttg cttcaggtca cctgcacaca gatgccgcca ttcatttgtg gagcgttgta
     1861 tcttgtgtct gagatcctta aagcaaaacc agatttaaga agccaactag atgatcatcc
     1921 ggagtctgac gaagaaaact tcgttgacgt gggagatgac agtgacgatg aaaagtttac
     1981 cgatgcagac aaagaaacag caacagatgc agtaaaggaa gtagagtcaa aggagacaga
     2041 gcctgagagc agcgcagagg ccgagaagcc gaaggccgct tcctgggtgc actttgacaa
     2101 cttgaaaggt ggcaagcaaa taaagacata tgatccattc agtagaaatc ctttattctg
     2161 cggagctgaa aatacaactc tttgggagct caaaaagcta tctgaacatt tccatccttc
     2221 tgtggccctt tttgcaaaga ctatccttga gggaaattgt attcaatact caggggaccc
     2281 actgcaggat ttcacactca tgagattctt ggatcgattt gtgtaccgaa atccaaagct
     2341 acataaaggc aaagaaaata ccgacagtgt tgtgatgcaa cccaaaagga agcactttat
     2401 gaagaatgtc agagatctcg ctgtgaacag caaggagttc cttgcaaaag aagaaagcca
     2461 gatcccagtg gatgaagtgt tcttctatag gtattacaaa aaagttgctg ttgttaaaga
     2521 caaacagaaa cgcagtgcag atgaagaaag tatagaagat attgatgatg aagaatttga
     2581 aaatatgatt gacacatttg aagacgacaa ctgcttccca cctgggaagg atgatattga
     2641 ttttgccagc aatatgaaaa aagcaaaagg agctaaggct gacttggaag actcagagag
     2701 tagtgacggc gaacttggag acctggatga cgatgaagtt tctctcggaa gtatgaacga
     2761 tgaagacttt gagattgatg aagatggagg aacgttcatg gatgtgtcag atgatgaaag
     2821 tgaagatgct ccagaatttg ctgacgccaa ccccaaagcc aatactaaga aaagcaagag
     2881 aaagagtgaa gatgattttg actttgctgg gtcatttcaa ggacaaaaga aaaagaagaa
     2941 aagtttcaat gactccagcc tgtttgtctc tgctgaggag tttggccatc tgctggatga
     3001 gaatatgggc tccaagtttg atactattgg catgaacgcc atggctaaca gagataatgc
     3061 aagtttcaaa cagctcaagt gggaagctga gcgagatgac tggctgcaca acagagatgt
     3121 gaaaagtatc atcaagaaaa agaaaaattt caggaagaag atgaaagccc ctcagaaacc
     3181 caaacggcag aggaagtgac atcttcaggg tgacaataaa ttaagattat acttaccctt
     3241 agtttttgct agtcaaccat ttttcctcat ctttctctct aactccatac attccagact
     3301 gttcaatgga tttgtaataa actgtggaaa caaagtactg tcatttataa aattacacaa
     3361 aatttaaact tatagtgaaa gaattcttcc atattgctac atagcaaacg aaaggacagc
     3421 ggggctccat gtccacacgg gagctgtaac cactctccag acctctgtga tgggctgctt
     3481 gtccgggacc aggtaccatg cttaggctaa gtgcatgatg tcactgtggt caactctaac
     3541 tatcagggtc agcgttggct ctccccaaga gaaagcagta tctctgagaa catagtacac
     3601 cggaggaaaa cagtctttac agcagtaact atggtttgtg cccgtcccaa cccttaggtc
     3661 tcgctctgga atctataatc ttaaccactg aacgaatgaa aactccagct ggcacgtggg
     3721 gtatataact cagtgacagc acttttgtcc attgtttata aagcctgcag gttgatcagt
     3781 aaacagggga ataaggatta aaacaagagc tagctgttct catctaagta ataggtgtga
     3841 gtccttactg tgtggtccca ggaagcaact agtgtttgaa accaataaca aaataaggtc
     3901 acttgctcta aagttgtaaa aacatcacag aatctatagg ttgtttcaca cttgaatttt
     3961 tacttgaaga aaaacatacc ttccaaaatg aatggaaatt tcttgctcat tgtttgtctg
     4021 aaatctgata ttaaaaaaaa atcactgtat taacatatta aacaacaatt tagtataaaa
     4081 aaaaaaaaaa a
//
