LOCUS       NM_001080929            3700 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus cerebellar degeneration-related protein 2-like
            (Cdr2l), mRNA.
ACCESSION   NM_001080929 XM_111244 XM_980976 XM_991669
VERSION     NM_001080929.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3700)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3700)
  AUTHORS   Watahiki,A., Waki,K., Hayatsu,N., Shiraki,T., Kondo,S.,
            Nakamura,M., Sasaki,D., Arakawa,T., Kawai,J., Harbers,M.,
            Hayashizaki,Y. and Carninci,P.
  TITLE     Libraries enriched for alternatively spliced exons reveal splicing
            patterns in melanocytes and melanomas
  JOURNAL   Nat Methods 1 (3), 233-239 (2004)
   PUBMED   15782199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL603828.9.
            
            On or before Jan 31, 2007 this sequence version replaced
            XM_111244.7, XM_980976.1, XM_991669.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.681194.1, BC150668.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-486               AL603828.9         182832-183317
            487-599             AL603828.9         191427-191539
            600-748             AL603828.9         191779-191927
            749-913             AL603828.9         193575-193739
            914-3700            AL603828.9         194262-197048
FEATURES             Location/Qualifiers
     source          1..3700
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 80.84 cM"
     gene            1..3700
                     /gene="Cdr2l"
                     /gene_synonym="D030068L24Rik; Gm21"
                     /note="cerebellar degeneration-related protein 2-like"
                     /db_xref="GeneID:237988"
                     /db_xref="MGI:MGI:2684867"
     exon            1..486
                     /gene="Cdr2l"
                     /gene_synonym="D030068L24Rik; Gm21"
                     /inference="alignment:Splign:2.1.0"
     CDS             408..1805
                     /gene="Cdr2l"
                     /gene_synonym="D030068L24Rik; Gm21"
                     /codon_start=1
                     /product="cerebellar degeneration-related protein 2-like"
                     /protein_id="NP_001074398.1"
                     /db_xref="CCDS:CCDS36371.1"
                     /db_xref="GeneID:237988"
                     /db_xref="MGI:MGI:2684867"
                     /translation="MRRAAGMEDYSAEEEESWYDHQDLEQDLHLAAELGKTLLERNKE
                     LEESLQQMYSTNEEQVHEIEYLTKQLDTLRLVNEQHAKVYEQLDLTARDLELTNQRLV
                     MESKAAQQKIHGLTETIERLQSQVEELQAQVEQLRGLEQLRIRREKRERRRTIHTFPC
                     LKELCTSSRCEDAFRLHSSSLELGPRPLEQENERLQTLVGVLRSQVSQERQRKERAER
                     EYTVVLQEYTELERQLCEMEGCRLRVQELEAELLELQQMKQAKTYLLAREEHLAEALL
                     APLTQAPEADDPQPGSGDDSNAQDGVSSPAASPSHAVRKSCSDTALNAIVAKDPASRH
                     AGNLTLHANSVRRRGMSILREVDEQYHALLEKYEELLSKCRQHGAGVRHAGVQTSRPI
                     SRDSSWRDLLGGEESPGEGKAGEKSLSQHVEAVDKRLEQSQPEYKALFKEIFARIQKT
                     KADINATKVKTHSSK"
     exon            487..599
                     /gene="Cdr2l"
                     /gene_synonym="D030068L24Rik; Gm21"
                     /inference="alignment:Splign:2.1.0"
     exon            600..748
                     /gene="Cdr2l"
                     /gene_synonym="D030068L24Rik; Gm21"
                     /inference="alignment:Splign:2.1.0"
     exon            749..913
                     /gene="Cdr2l"
                     /gene_synonym="D030068L24Rik; Gm21"
                     /inference="alignment:Splign:2.1.0"
     exon            914..3700
                     /gene="Cdr2l"
                     /gene_synonym="D030068L24Rik; Gm21"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agatgcagcg gcggctccgg gtgtcgcggc gcgggccggg cggtgtgcgg gccggaggcg
       61 ggcaaggggt acccgccgct gcatccgcac tctgctgacg ccctagccct gcaggtggtc
      121 ccgggtggtc ccagctgtcg tcccactttg cagtccccac ccctccgccc tttgtgccgc
      181 cgccacccgg cgtccccagt tcggcgggac ccggggagcg cgggagccag aggccccgct
      241 gggcgcacgg ggccggcagc ggatggcgat cacgggcgga gggcgcaggg gcgctgcagc
      301 ccgagctccc gacgttggaa gcccgggccg cctccgccgc attgtcccgg gctgcgagcc
      361 caggccctga gctgccgcag cgcccgccca ccgccacccg cggggccatg cggagagccg
      421 cggggatgga ggactactcc gcagaggagg aggagtcctg gtacgaccat caggacctgg
      481 agcaggactt gcacctagcc gccgagcttg ggaagactct gctggagagg aacaaggagc
      541 tggaggagtc cctgcagcag atgtactcca ccaatgagga gcaggtgcat gagatcgagt
      601 acttgaccaa gcagctggac acactgaggc tcgtgaatga acagcatgct aaagtgtacg
      661 agcagctgga cctgacggcc agagacctgg agctgaccaa ccagaggctg gtgatggaga
      721 gtaaggctgc ccagcagaag atccacgggc tgacagagac cattgagcgc ctgcagtccc
      781 aggtcgaaga gctacaggcc caggtggagc aacttcgagg cctggagcaa cttcggattc
      841 gccgggaaaa acgggaacgc aggagaacca tccatacctt cccctgcctg aaggagctgt
      901 gcacaagttc ccgatgtgag gatgccttcc gcctacacag ttcctctttg gagctgggtc
      961 ctcggccgct ggaacaggaa aacgaacggc tgcagacctt ggttggggtg ctccgttccc
     1021 aggtgagcca ggagcgacag cgcaaggaac gagcggaacg tgagtacacg gtggtgctcc
     1081 aggagtacac ggagctggag cgacagctgt gtgagatgga gggctgccgc ctgcgcgtgc
     1141 aggagctgga ggccgagttg ctggagctgc agcagatgaa gcaggccaag acctacctgc
     1201 tggcccggga ggagcacctg gctgaggctc tgctggcgcc cctcactcag gcccctgagg
     1261 ccgatgaccc ccagccaggc agtggagatg actctaatgc ccaggatggt gtctcctcgc
     1321 ctgccgcttc ccccagccac gcagtgcgca agagctgcag tgacacggcg ctcaatgcca
     1381 tagtggccaa agacccagcc agccgccatg ctggcaacct cacgttgcat gccaacagtg
     1441 tgcgcaggcg cggtatgtct atcctgcggg aggtggatga gcagtaccac gcgctgctgg
     1501 agaaatacga ggagctactg agcaagtgcc ggcagcacgg tgccggagtg cggcacgcgg
     1561 gggtgcagac ctcacggccc atctcccggg acagctcctg gagggaccta ctggggggcg
     1621 aagagagccc gggagagggc aaggcgggtg agaagagcct aagccagcac gtggaggctg
     1681 tggataagcg gctggagcag agccagccgg agtacaaggc actcttcaaa gagatctttg
     1741 ccaggatcca gaagaccaag gccgacatca acgccaccaa agtcaagaca cacagcagca
     1801 agtgacccct ctctaggcct gtcgcctccc tccgcctccc gaccagaggg gtccctcatg
     1861 cctggctggc agcctcctgg caagtgagaa agccctttat gcagcaatat atcatagcag
     1921 gtggctgggg acactgcata ttccctgctg gtggctcggc tcacctgttc tgcctccctt
     1981 ggccactttg cttcagctca aaggcacagc tcagtttaaa agccaaacac actccccacc
     2041 ccgccactgc cactccacca ctgtccctgg gggcttttca gctcccccag ccctcagctt
     2101 ctggacccca ggcttcaccc tcagattgct gccagtcttc tgcaagcctt tctagctttg
     2161 ccctccaaag ttgtttttgt tttttggttt tttttttttt tttttctgag agatttgcaa
     2221 tgcaaggcct cctgaagcct tgtcacaact ggaaacactt gaaaggggac ctcagagcca
     2281 gccattgctg gtgtctggag tctcccagac cactcactgc ttcttgccag ttatgactgt
     2341 cattcccttc gcaccagctg taccactccc agaggtctga gcaggccaca gatagccccc
     2401 accttgcaga gcaggaagtt tagccaggct cgagtgtatc ccctccagcc ctggcaaagg
     2461 gcttctgctc accacagatc tatagccagt ctgaatagag gaagagagaa ccccacaaca
     2521 gccatacacg ggtagtgtcc ctttcctctc agagccaagt tccattcctg gagttatcct
     2581 ctaggcatga agccttccag gggccgggat ggtagggagt ttcacccctt cctccctccc
     2641 caagcctgca aaccaccttt gctttcattc ctttctctgc gcctgccccc atctcaggga
     2701 ccatgatgtc tcatccagtc ctctcttcct caggccaccc agggacagtt cacatctgca
     2761 gccttcagaa tgtcctgtag gagtgtcacc aacccaggtc caagtgttca tgcctgtcct
     2821 tcaccaggga ctgtaggacc cttacttgtt ttgtttggtt gggctttgat ctgttttttt
     2881 gttttgcttt gttttgtttt gtttttttga gacagggatt ctctgtgtag ccctggctgg
     2941 cctggaactc actctgtgga ccaggctggt ctccaactca gatcctcctg cctctgcctc
     3001 ccaagtgctg ggattaaagg tgtgatctac cactgccggg ccctcatgtt gcgttgtgtt
     3061 cttaagttga ggaagaactg tctcctcttc cacctttcta cagaatgcct cttctttacc
     3121 tcccgcctct atggggatga cttttgaggc cccacctggg tcaagggttc agtattttag
     3181 tctaaaactt cagaaagtca agcatcactt aagacatgcc cagggctcca gcttgccctc
     3241 agcagtcctt caggacttct ggttccttcc gccacccttc tcaagattct agaaatcaaa
     3301 ggagccatac aatccggcag gaggcagtga ctgtggtctc agtgctggga gcccaggagg
     3361 aaccgtcatg ccttacctcc ttctaatggg taaaggggct ttcttatcaa gcatgtctga
     3421 catccctgga gaggctacgc tgttccaggt ggcactggga tgccagttgg cagctggatc
     3481 cttctgttca cacgacttgg aaccttttgt cctttggggc tgggcacctc cagaccctct
     3541 gtgtgtccct gtcatctggg gatggggagg aattcaggcc tgttcacttc cccagttctg
     3601 tagcagccga tcagcgtcac ctttgaagta tacatgagag aaatatattt acaaatgctt
     3661 tattctcttc tttaataaaa agtgcaccgg tattctagaa
//
