LOCUS       NM_197998               1011 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus cysteine rich, DPF motif domain containing 1 (Cdpf1),
            transcript variant 2, mRNA.
ACCESSION   NM_197998 XM_128243
VERSION     NM_197998.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1011)
  AUTHORS   VanBuren,V., Piao,Y., Dudekula,D.B., Qian,Y., Carter,M.G.,
            Martin,P.R., Stagg,C.A., Bassey,U.C., Aiba,K., Hamatani,T.,
            Kargul,G.J., Luo,A.G., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Assembly, verification, and initial annotation of the NIA mouse
            7.4K cDNA clone set
  JOURNAL   Genome Res 12 (12), 1999-2003 (2002)
   PUBMED   12466305
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC117784.13, BY081241.1, AK008763.1 and AI849737.1.
            
            On Sep 9, 2009 this sequence version replaced NM_197998.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR,
            compared to variant 1. Variants 1, 2, and 3, encode the same
            protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC025858.1, BI555367.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849382, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-38                AC117784.13        152805-152842       c
            39-391              BY081241.1         1-353
            392-994             AK008763.1         79-681
            995-1011            AI849737.1         1-17                c
FEATURES             Location/Qualifiers
     source          1..1011
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 40.42 cM"
     gene            1..1011
                     /gene="Cdpf1"
                     /gene_synonym="2210021J22Rik"
                     /note="cysteine rich, DPF motif domain containing 1"
                     /db_xref="GeneID:72355"
                     /db_xref="MGI:MGI:1919605"
     exon            1..59
                     /gene="Cdpf1"
                     /gene_synonym="2210021J22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            60..206
                     /gene="Cdpf1"
                     /gene_synonym="2210021J22Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             207..566
                     /gene="Cdpf1"
                     /gene_synonym="2210021J22Rik"
                     /note="UPF0595 protein C22orf40 homolog"
                     /codon_start=1
                     /product="cysteine-rich DPF motif domain-containing
                     protein 1"
                     /protein_id="NP_932115.2"
                     /db_xref="CCDS:CCDS27722.1"
                     /db_xref="GeneID:72355"
                     /db_xref="MGI:MGI:1919605"
                     /translation="MASETEPRPLGTFECQLCALSAPYSYVGQKPPDTQAVVLLEESY
                     IMKDPFSSDKARFLVLGSRCSVCSRLVCVGPDCSLFYSKRVCLPCVQENMSAFPQEIQ
                     QDVEKRKSTSKKHSNRP"
     exon            207..319
                     /gene="Cdpf1"
                     /gene_synonym="2210021J22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            320..431
                     /gene="Cdpf1"
                     /gene_synonym="2210021J22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            432..998
                     /gene="Cdpf1"
                     /gene_synonym="2210021J22Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      979..984
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cdpf1"
                     /gene_synonym="2210021J22Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      998
                     /gene="Cdpf1"
                     /gene_synonym="2210021J22Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcggaactag tactgtgggc gggccacgca ggcgctctgg gggtcccgga ggggaggtga
       61 cagctgctgt tgccatcaga ccactgaccc agcaatttac ggagaggcgg ggcctccaag
      121 gccttgaata tagaagtgcc atcaaacagt taagaatgca gccttatcaa gtggactagg
      181 atacacctcc ccaccccaac ctcctgatgg catctgagac agagccccgc cccctgggca
      241 cgtttgagtg ccagctttgt gccttatcag ctccttacag ctatgtgggg cagaagcccc
      301 cagacaccca ggctgttgtc ctcctggagg agagctacat catgaaagac cccttctcct
      361 cagacaaggc caggtttctg gtcctcggct ctcggtgcag tgtgtgcagc aggctggtgt
      421 gtgtgggccc ggactgcagc ctgttctact ccaagagggt ctgccttccc tgtgtccagg
      481 agaacatgag tgctttccct caggaaatcc agcaggatgt agagaagaga aagagcacca
      541 gcaagaagca ctccaaccgt ccctgactgg caggggcaca gccctcctgc gaagcattgg
      601 gctgggctca gccaggattc aggctgggag ctgtggaccc ggtcttcttt gaactgggtg
      661 gatacctcca gcctcggaag ctgaggaact ggccagggct gaggacagac atcaggggtg
      721 tatccagctg gagctctagg tctggcctct ggaggccagg agagatggag agggacctcc
      781 tttgattgac agctggtaga cactccctgt agatgcacac gtgggaagac acctagcttc
      841 tctccagact tccaaacaac acaatgttat ctgtctaggg aattcagcct ccgagggcca
      901 gagggtaagc aagggtgacg tcacatccct gtaactcctt ggagatgatt taaaccttga
      961 ctctgtatca tacttatcat taaaaacctg aaggataaaa aaaaaaaaaa a
//
