LOCUS       NM_029976               1880 bp    mRNA    linear   ROD 29-JUL-2024
DEFINITION  Mus musculus CDKN2A interacting protein N-terminal like
            (Cdkn2aipnl), mRNA.
ACCESSION   NM_029976
VERSION     NM_029976.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1880)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1880)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1880)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643. PMID: 29144450]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY088687.1, AK150573.1 and BQ032176.1.
            
            On Aug 13, 2009 this sequence version replaced NM_029976.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB041653.1, AK150573.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-45                BY088687.1         2-46
            46-1862             AK150573.1         2-1818
            1863-1880           BQ032176.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..1880
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 31.78 cM"
     gene            1..1880
                     /gene="Cdkn2aipnl"
                     /gene_synonym="A430101B06Rik; D11Ertd497e; MNCb-1520"
                     /note="CDKN2A interacting protein N-terminal like"
                     /db_xref="GeneID:52626"
                     /db_xref="MGI:MGI:1261797"
     exon            1..327
                     /gene="Cdkn2aipnl"
                     /gene_synonym="A430101B06Rik; D11Ertd497e; MNCb-1520"
                     /inference="alignment:Splign:2.1.0"
     exon            328..427
                     /gene="Cdkn2aipnl"
                     /gene_synonym="A430101B06Rik; D11Ertd497e; MNCb-1520"
                     /inference="alignment:Splign:2.1.0"
     exon            428..1864
                     /gene="Cdkn2aipnl"
                     /gene_synonym="A430101B06Rik; D11Ertd497e; MNCb-1520"
                     /inference="alignment:Splign:2.1.0"
     regulatory      775..780
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cdkn2aipnl"
                     /gene_synonym="A430101B06Rik; D11Ertd497e; MNCb-1520"
                     /note="hexamer: AATACA"
     polyA_site      802
                     /gene="Cdkn2aipnl"
                     /gene_synonym="A430101B06Rik; D11Ertd497e; MNCb-1520"
     regulatory      1838..1843
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cdkn2aipnl"
                     /gene_synonym="A430101B06Rik; D11Ertd497e; MNCb-1520"
                     /note="hexamer: AATAAA"
     polyA_site      1864
                     /gene="Cdkn2aipnl"
                     /gene_synonym="A430101B06Rik; D11Ertd497e; MNCb-1520"
                     /note="major polyA site"
ORIGIN      
        1 agccgtgcgg cggcggcgcg gggcgtgtcg ggaaagcggc gggctggtgc gatccttagc
       61 ggcggcagcg gctgcggcag cgggagccat ggtgggtggc gaggccagcg ccgcggtgga
      121 gaagctagtt tccggcgtgc ggcaggccgc cgacttcgcc gagcagtttc gttcctactc
      181 ggagagcgag aagcaatgga aagcgcgcat ggagttcatc ctgcgccacc tgcctgacta
      241 ccgagaccca cccgacggcg gcggccgcct ggaccagctg ctgtccttat ccatggtctg
      301 ggccaaccac ctcttcctgg gttgcagtta taataaagac cttctggaca aggtgatgga
      361 aatggctgat gggattgaag tggaagacct gccacagttt acaaccagaa gcgaactaat
      421 gagaaagcat caaagctaag gcagatctcc acatttccac cctggggaca gacttagaaa
      481 ggaggccagg gtgaagatga ctgaacattg gcagctctca agattcctgg catttgcagc
      541 atagaggcag ctagactgga agaggacggg gcccatagct tcaaagacat cttcattctt
      601 ccaggattgc tgtaaaatac aaatgcatat ttatgtattt atacatggcg aactctcaga
      661 aatttcatca ggattgtcca agccaaactt tgtttgaaat gccttttatg ttgatataat
      721 aatgacaggt gatacatttt ataatttgat tctttttaaa acagagtacc tgtaaataca
      781 gttcttgttt tgccgtaccc cacccatgtt tgtcctgagc caaggcagat cctctgtgtc
      841 cttatttcta cctgaacccc ctgtacactt gtacctcacc actgatggcc accaaaggac
      901 cgtgcactaa ccagctgtgt cactggagca cccccactgc tgggctcagg gacctttgtg
      961 taggaaatgg taatcatgtc gcaggcttga agtagcagag ctagcgcata ggtaggaggc
     1021 aatgtacaaa aaagcatcca gcctcatttt acagctcact gaggctagag atgtagctca
     1081 gtgctagagt gcgtgcttag cgtgctcgag gtcctgggtt gggtccctag tatttcaaag
     1141 agaggaaaaa atagatttaa aaatcactgg aagcatatat ggttttgttc aaccaaccag
     1201 atggtttcta ggcactagat gcccatgtgc cagcattgtt tatttgtttg ttttgtttct
     1261 agaaggcttt cacacttgaa gaactaactg ccttgcatac cgcgtctgga ttgcagtgcg
     1321 gtcctgcatt ccacctgacc ccgcttctgg ttccctgtat ttagtcacca taagataact
     1381 gagcagtggg cagctgtgga gcagtgtaca cagcaggact catcaacggc aggcccattg
     1441 tggccagaaa gacagtgggg tctgccttag cttcatctac tggatacagg acacccagaa
     1501 gctggggcca ctggtgtttg gcgtcagagc agtggggcac attgtttgtg gcttgaaata
     1561 aaagccacat ttttatgtgg attctgttcc agtccccagt gaccattgat tcgatacctt
     1621 ggacaagctt ctccaggcaa tgagtgactg cctgtcagag ggaagtggca aggtggtgac
     1681 tggtgaaggg cagagctctg ggctcagtga gctagagcct tgtcttctca gatgcggcct
     1741 ggccttcatc cattctaatc atctgcagac tcgtgaggct taaaaacaaa atgcactttg
     1801 catggattgt tgattttact ttctgtctac aacccccaat aaaacagctt ttccattgaa
     1861 tgaaaaaaaa aaaaaaaaaa
//
