LOCUS       NM_001409759            2949 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus CDAN1 interacting nuclease 1 (Cdin1), transcript
            variant 3, mRNA.
ACCESSION   NM_001409759 XM_006499845
VERSION     NM_001409759.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2949)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2949)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   3  (bases 1 to 2949)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   4  (bases 1 to 2949)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL844901.8, AL844544.9 and AL929037.3.
            
            On Jul 21, 2022 this sequence version replaced XM_006499845.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.3140157.1,
                                           SRR17784648.1234982.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-307               AL844901.8         193600-193906
            308-353             AL844544.9         44562-44607
            354-418             AL844544.9         45493-45557
            419-479             AL844544.9         52561-52621
            480-552             AL844544.9         56221-56293
            553-632             AL844544.9         83139-83218
            633-682             AL844544.9         83566-83615
            683-750             AL844544.9         88283-88350
            751-816             AL844544.9         99942-100007
            817-922             AL844544.9         100621-100726
            923-1068            AL844544.9         120765-120910
            1069-2949           AL929037.3         36033-37913
FEATURES             Location/Qualifiers
     source          1..2949
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 58.18 cM"
     gene            1..2949
                     /gene="Cdin1"
                     /note="CDAN1 interacting nuclease 1"
                     /db_xref="GeneID:399568"
                     /db_xref="MGI:MGI:3026886"
     exon            1..307
                     /gene="Cdin1"
                     /inference="alignment:Splign:2.1.0"
     CDS             207..1286
                     /gene="Cdin1"
                     /note="isoform 3 is encoded by transcript variant 3;
                     uncharacterized protein C15orf41 homolog"
                     /codon_start=1
                     /product="CDAN1-interacting nuclease 1 isoform 3"
                     /protein_id="NP_001396688.1"
                     /db_xref="GeneID:399568"
                     /db_xref="MGI:MGI:3026886"
                     /translation="MILTKAQYEEIAQCLVSVPPTRQSLRKLKQRFPSQSQATLLSIF
                     SQEYQKHIKRTHAKHHTPEAIESYYQRYLNGVGKNGAAPVLLELANEVDYAPSLMARI
                     ILERFLQGHEQTPPSKSVINSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHA
                     IGYEHEVLLRDLLLKKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKAS
                     FGDECSHHAYLHGQFWSYWNSAGPDRHPDPGCQVQSSSLTSPPRDEGEYILSDCEIMI
                     CPCLHCSCFYRGLDQAWSSIGMDLSRNWTATGKEASCSKPRSPQTSSPYAIAQLDPED
                     PGREAGSNVTFLQYKLLAASALNLR"
     exon            308..353
                     /gene="Cdin1"
                     /inference="alignment:Splign:2.1.0"
     exon            354..418
                     /gene="Cdin1"
                     /inference="alignment:Splign:2.1.0"
     exon            419..479
                     /gene="Cdin1"
                     /inference="alignment:Splign:2.1.0"
     exon            480..552
                     /gene="Cdin1"
                     /inference="alignment:Splign:2.1.0"
     exon            553..632
                     /gene="Cdin1"
                     /inference="alignment:Splign:2.1.0"
     exon            633..682
                     /gene="Cdin1"
                     /inference="alignment:Splign:2.1.0"
     exon            683..750
                     /gene="Cdin1"
                     /inference="alignment:Splign:2.1.0"
     exon            751..816
                     /gene="Cdin1"
                     /inference="alignment:Splign:2.1.0"
     exon            817..922
                     /gene="Cdin1"
                     /inference="alignment:Splign:2.1.0"
     exon            923..1068
                     /gene="Cdin1"
                     /inference="alignment:Splign:2.1.0"
     exon            1069..2949
                     /gene="Cdin1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2735..2740
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cdin1"
                     /note="hexamer: ATTAAA"
     polyA_site      2756
                     /gene="Cdin1"
                     /note="major polyA site"
     regulatory      2914..2919
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cdin1"
                     /note="hexamer: AATAAA"
     polyA_site      2949
                     /gene="Cdin1"
ORIGIN      
        1 agttctacag cccgcctctc ccgcggaggt gaagcctggg acgctgcgtg tctccgcccc
       61 gcggtgcagc taggggggtg tgctttgggg gcataaggga tagctaaata agtggagggc
      121 ccagggtcgt accgcgctct gcccttccct aggttctagg caccaagccc gcacgagccc
      181 aagggtgatt tttccttggg cccaatatga tactaaccaa agcccagtac gaggagatag
      241 cccagtgcct agtgtctgta ccgcccacta ggcagagcct gaggaagctg aagcagaggt
      301 tccccagtca atcgcaggcc actctgctga gcatcttctc ccaggagtac cagaaacata
      361 ttaaaagaac acatgccaaa catcacactc cagaagcgat tgaaagttac taccagaggt
      421 acctgaatgg cgtggggaaa aacggagcag cccccgtgct cttggagctg gccaatgagg
      481 tggactatgc accctcatta atggctcgga ttatcctgga gagatttcta caggggcatg
      541 aacagactcc accctccaag tctgttataa acagtatgct gcgggaccct tctcagattc
      601 cagatggagt tctagcaaac caggtctatc agtgcatcgt gaatgactgt tgctatggac
      661 cgctggtgga ctgcatcaag cacgctattg gctatgagca tgaagtcctg ctgagagact
      721 tgcttctgaa gaaaaacctg tcgttcctag atgaggatca gctccgtgca aagggctatg
      781 acaaaacccc agacttcatt ttacaggtgc cagttgctgt ggaagggcac ataattcact
      841 ggattgaaag caaagcctca tttggtgatg aatgtagcca ccacgcctac ctgcatggcc
      901 aattctggag ctactggaat agcgctgggc cagacaggca tccagaccct ggctgtcaag
      961 ttcagtcgtc ctctttgact tctccaccaa gagatgaggg cgagtacatt ttgagtgact
     1021 gtgaaatcat gatctgtcct tgtctgcact gctcctgctt ctatagaggt ttggaccagg
     1081 cctggtcatc tattggtatg gatttatcca ggaactggac tgcaaccggg aaagaggcat
     1141 cctgctcaaa gcctcgttcc ccacagacat cgtcacctta tgccatagca cagcttgacc
     1201 ccgaagatcc tggaagagaa gccggaagca atgttacttt cctgcagtat aaactgctgg
     1261 cagcatctgc cctgaacttg agatgaaccc ttgctgccgt cgcagcccta cctctagaca
     1321 aacatatcag gagtttctgt tttccttcat ccctgggtga tgtgaatagc caagaactgc
     1381 agacacaacc cactcattat cagcatttct gtctctgaca aacagttagt ttatagatag
     1441 tcataatctt gcttccttcc gaatgctttc tccttgtata ctgaacagaa gagaaagtat
     1501 ggagactgca agatgtgagt tttcacttct cctccctgtg atcaaatatt ttttcttcta
     1561 accctccatt catattctct ctctctctct ctctctccct ctctctctct ctctctctct
     1621 catattctct ctccccctcc ccaccccacc cccggtctct tggcgggtac actggtactg
     1681 agtgttgcat taccggggaa taacctagca caatcctaga aaagctggag acaggaagtc
     1741 cgtaagtaaa tgttccttct cacctggggc tcagcagagg ccgcccggag tctttctgtg
     1801 gagcctggtg gcctcctgac ttctgtggca ttcagccaag ctgcacaagt ccccctcgat
     1861 gagaatttcc tcttttcata aagttgatgt gaacaccaaa cccttcacaa ggctgacctc
     1921 ctcttcaagt atgagttgcc gctgtgtctg gaaaaccatg ctcctctagc tgggggctgc
     1981 agcagaggac tgcaccccgg cctctggtct gcagtggccc tctaaagcag actggcggcc
     2041 ggcaggaaca accttagcag ctatcattat gagatttttt tttaaagtac attcatacat
     2101 actgctttga gtctgcattt tataccacat aattgtttaa tactcaaatg attcagacat
     2161 tataaatagt cagctttgaa tgaattaagt gtaccagaaa agttcttgag tgatttttaa
     2221 ataagcaata taaaagagat tttgcattta ttcgctttca tttctttagt tttatatact
     2281 gcagaccagg cttcggtcag aagcaaaaca tcaataaaat aattataaac ctatcttttg
     2341 ggaaattaaa aactaatctg catctcccca aaaaatgtat tttgtagaaa aaatttgccc
     2401 ccatgcttat aaaatgtagc ttttataatg ttgaatagat tttagaaaca aacaccgtaa
     2461 ctcatacgtt ggttggatcc ttttgtacct ggttagtgag aaacttggtc tgttgccttc
     2521 ctcccaaggg tcacaagggt ggcaggtcca agacaggatt ttcagctctc ctgagagagt
     2581 acaggaaatc acgggagaga aggtagggtt atgggtaagg cagtgtcagg caaacgcctg
     2641 tttccaccta gaatacagcg tgcaggtttg gcgtatgaaa tagatgattg aagaccgcta
     2701 ctacattgcc tgtatacaca gtttaaagaa aaacattaaa atctggtttc atggcatgcc
     2761 ctaagttacc agtttggttt gtttgggttt ggtttggggg cacgggggga gcagtaaatt
     2821 acatgcacct gcacagatgt tggcagtctt gctaaaccct tgtcagagat ttgcttgttc
     2881 caacattagc ctaatttatg atgaccgttc actaataaaa ggtgctttcg tttgccattt
     2941 acccttcta
//
