LOCUS       NM_001378391            2517 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus cadherin-related family member 4 (Cdhr4), mRNA.
ACCESSION   NM_001378391 XM_003688869
VERSION     NM_001378391.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2517)
  AUTHORS   Hirayama T, Sasaki A and Yagi T.
  TITLE     Evaluation of somatic alterations of Pcdh-alpha transcripts in the
            brain by cDNA analysis without PCR
  JOURNAL   Genes Cells 11 (1), 95-97 (2006)
   PUBMED   16371135
  REMARK    GeneRIF: constructed cDNA libraries from the mouse cerebral cortex
            without using pcr.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL731808.26.
            
            On Feb 10, 2020 this sequence version replaced XM_003688869.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849374,
                              SAMN00849387 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on single protein-coding
                                         transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-118               AL731808.26        96014-96131
            119-303             AL731808.26        96404-96588
            304-466             AL731808.26        96691-96853
            467-552             AL731808.26        96934-97019
            553-657             AL731808.26        97831-97935
            658-761             AL731808.26        98534-98637
            762-898             AL731808.26        98807-98943
            899-1082            AL731808.26        99140-99323
            1083-1236           AL731808.26        99425-99578
            1237-1330           AL731808.26        99795-99888
            1331-1534           AL731808.26        100154-100357
            1535-1674           AL731808.26        100438-100577
            1675-1825           AL731808.26        100810-100960
            1826-2046           AL731808.26        101046-101266
            2047-2189           AL731808.26        101477-101619
            2190-2246           AL731808.26        102070-102126
            2247-2334           AL731808.26        102259-102346
            2335-2365           AL731808.26        102554-102584
            2366-2517           AL731808.26        103087-103238
FEATURES             Location/Qualifiers
     source          1..2517
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 59.07 cM"
     gene            1..2517
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /note="cadherin-related family member 4"
                     /db_xref="GeneID:69398"
                     /db_xref="MGI:MGI:1916648"
     exon            1..118
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            119..303
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            304..466
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            467..552
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            553..657
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            658..761
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            762..898
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            899..1082
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1236
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            1237..1330
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            1331..1534
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            1535..1674
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            1675..1825
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            1826..2046
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            2047..2189
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            2190..2246
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            2247..2334
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            2335..2365
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
     exon            2366..2517
                     /gene="Cdhr4"
                     /gene_synonym="Cdh29"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagcaactag ccaggcaaca acagagttag cctgagaaac agcttcctcc accatttctt
       61 caggctacca tggcactgct caggctcctg gagtttcttt ttgctttact tatccctgtc
      121 ctctacagcc tgccctggac tatgtatatt tctgagaaca atggccctgg gacggtcctt
      181 cggcctttct ccttcaactg ttcctcctac atgcccaccc tggagttact cagtgtgaga
      241 ccacctacca gcttcttcaa taaacccagc atgcatgggg ataagggagt ctacctggtg
      301 atggtgtcct tgagtagctc tgctcggctg gatgcccttg cagtgaacca gtatgagctg
      361 cagctgcagt acagatgtgg taactttgtg gtagacggat caatcttcgt tcatgtgcag
      421 cgggacccgg ggcggatccg ctgcactggt gcttttgcca gcccagctgg ggaattcatt
      481 tatgtgccag agaccatcac acccggggcc ctggtgtaca ctctgttgct gccaggagtc
      541 cagagagccc agataaacat taccagtgcc caaaaccctt cccctgggcc tttctccatt
      601 gatgaacagg gattgcttcg ggcaccatcc cagggcctca gaggccaggc tcaaaagacc
      661 ttccagctgc agatttcagt gtccttcgaa aaaaaccaaa gctgcagagg gatgctgaca
      721 gtgaaggttt tgcctgcacc ctccagccaa gtctccttcc tacagaaggc ccagagcatt
      781 accatctcag aggatctggt tcctgggagc gaggtggttc gggtccaagc taccggattc
      841 aacttactct atgaaatcat ctccccaagg cctagtttat tctactcgat tggacaagct
      901 gacggggtag tgaggaccac cgcacccctg gatttggctc gcgttcaggg cgccatggtc
      961 acaaaactgc aagtgagggc ctttgaaagg ccccggccct gggccagtgc ggtgttcgat
     1021 ctcacggtta gcgtgcgcgc ggtaaaccag tggcccccac gctgccatcc agcgctactg
     1081 gtgactcaaa ttccagagac ctcactcgtg ggcactgtgc tggacgcgct cacgtgtgtt
     1141 gacccagact ctgcaggccg ccccctcgac taccagctgc ggttccacag ccctcctgac
     1201 tctgccagcc tccgtcttcg tgacagaatc cttgaggtga atgctacgtt ggactgtgac
     1261 acacctgggg cttgcttcca gcattcagct tccatcttgg tggtcgatgg tggtcaaccc
     1321 caaatgacca ctgagattcc agtgctggtg atggtgacac ccgtcaacga gttctcccca
     1381 gcctgtgtcc cacgcacatt ccgggttcag gaggacacag ggccccacac tctgctgggc
     1441 tccatagtgg gcacggatat ggactaccct cgtaacagcc tcgagtacta catctctggt
     1501 ggaccctcta cctttgctgt ggatcgtctg agtggagaac ttcacctcct ggggcctttg
     1561 gactatgagc agcagaggtt gtacaagatc accattctgc tgattgatca cagtcaagac
     1621 tgggacctca acagtcaccg atcaggttca tgtaccataa ccattgaggt tgaggacgtg
     1681 aatgaccatg cccccgagtg tgagcctcca tttcaggaac tcactatcta cactcccatg
     1741 ggtcatagca tggaggtgac taaggtgtca tgttggatcc cacaagagcc acagcgtttg
     1801 accctctcct acagcatcgt gggagggaat agccagagcc ggtttagact gcaaggggcc
     1861 atcctggtgt acaatgacac tgtgttgggg cctccatggc cagagcagcc ctgcacctat
     1921 gagctattga tccatgttgc agatgtgggc ccttccatac cccacctcag cactacaacc
     1981 accattattg tgcatctagt tccttggaag gccagcacgg tggccaccag cacccaccaa
     2041 agcacagtgt cctcaacaat gacacccctg attgtgacag aattagaggc tttctggaag
     2101 ccagagccct ggtttgtggt agtgctgaca gcaactggtg cagttctcct tctggctctg
     2161 ggttggctcc tcagcaggat cctccggggg ttggccccgt ccctacaggc accaagcaaa
     2221 ccagccaaag ctcagttgct aaacagcatc cagggaaatg aaggacctat tgagaggcaa
     2281 atggaggcac caagaataga gatgtcccag gtacccagaa ctgccatgag cctgcaacat
     2341 tttgatggca gagcccaaga tgtctgtatg gggagagatt acctgttcaa cacactcacg
     2401 ggagcccggc gttggctgtg aggcggagta gctgctttac tctgtgggga gttccctttt
     2461 cccatgatca tagcctggat ttccaaacca atttagtaat aaagacggca aacagaa
//
