LOCUS       NM_001024478            2953 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus cadherin-related family member 3 (Cdhr3), mRNA.
ACCESSION   NM_001024478 XM_126902
VERSION     NM_001024478.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2953)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK047666.1 and
            AK049806.1.
            
            On Jun 17, 2005 this sequence version replaced XM_126902.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK049806.1, BC138911.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2367              AK047666.1         2-2368
            2368-2953           AK049806.1         2369-2954
FEATURES             Location/Qualifiers
     source          1..2953
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 13.95 cM"
     gene            1..2953
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /note="cadherin-related family member 3"
                     /db_xref="GeneID:68764"
                     /db_xref="MGI:MGI:1916014"
     exon            1..147
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     CDS             102..2597
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /note="cadherin-like protein 28"
                     /codon_start=1
                     /product="cadherin-related family member 3 precursor"
                     /protein_id="NP_001019649.1"
                     /db_xref="CCDS:CCDS36430.1"
                     /db_xref="GeneID:68764"
                     /db_xref="MGI:MGI:1916014"
                     /translation="MQGAVIVLVLFGITSGGEALHLLHLPATSNVAENAPPATLVHKF
                     SVNLSVSLSPVIPGFPLVVNPRPFTEAFRVNRLSATNFEVVTTGKEQLDFERGPKAFD
                     LQIYVKDDVGVTDVQVLTVQVTDVNEPPQFQGILAQGLNLYVIERTNPGFIYQVEAFD
                     PEDTSRSIPLGYFLISPSKNFRMSANGTLFSTTELDFEAGHKSFNLLVGVRDSGNLEA
                     STALQVTIVNINDETPRFTSPRRVYSVPEEVPLGTMVANITAMDPDDEGFPGRLLYSI
                     TTTSSYFMVDQLTGTIQVARRLDRDAGELRQNPIISLEVRVRDRPSGGQENRMQITFI
                     VEDINDNPATCRKLTFSIMLPERTANGTLLLDLNKFCFDDDSEAPNNKFNFTTPSGAG
                     SSRRFSQHPAGSGRIVLTGDLDYENPSNLAVGNVYNVMIQVQDAAPPYYKKSIYISIL
                     TRPENEFPLIFERPSYVFDVPERRPARTQIGQVRATDADFPRTPVVYSVSRGGSSLQY
                     PNIFWINPKTGELQLITQADHETTSVYILTVEATNGEDRSSVTVTVNILGENDEKPVC
                     TPNFYFMAIPVDLKVGTNIQNFKLTCTDLDSSPSSFRYSIGSGNINNHFTFSPNAGSN
                     ITRLLLASRFDYSSLDTVWDYQLLVHITDDNLLSGSTKAKALVETGTVTLSVKVIPHP
                     TTTITTPRPRITYQIRRENVYSTSAWYVPFIVTLGSILLLGLLGSLMVLLSKAVYRHC
                     SSTTRRDRKPLTKKRDTKRMNREAMVESIQMNSVFDGEAVDPVTGEIYEFNSKTGARR
                     WKGPLTQLPNWPEPSTQHRGTAGEAPVPKHTGR"
     exon            148..350
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            351..516
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            517..614
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            615..709
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            710..814
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            815..963
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            964..1153
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            1154..1325
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            1326..1428
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            1429..1527
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            1528..1754
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            1755..1926
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            1927..2171
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            2172..2353
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            2354..2367
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            2368..2399
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            2400..2448
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            2449..2600
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     exon            2601..2953
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2912..2917
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
                     /note="hexamer: AATACA"
     polyA_site      2936
                     /gene="Cdhr3"
                     /gene_synonym="1110049B09Rik; Cdh28"
ORIGIN      
        1 aaagtcagga gggaaaggag aatggtggtg tctagaataa atgagggcta gaacactgga
       61 taaaaatcct ctgtggccgt acacacaggg agccatccag catgcagggg gcagtcattg
      121 tccttgttct ctttgggatc acctcaggag gggaagctct acacctgctc cacctgcctg
      181 ccactagcaa cgtggcagag aacgctccac ctgccacttt ggtgcacaag ttttctgtga
      241 atttatcagt atcgttgtca cctgtgatcc cagggtttcc cttggtagtc aacccaaggc
      301 ccttcacgga ggccttcagg gtgaacagac tgtcagcaac caactttgag gtggtcacca
      361 ccgggaaaga acaactagat tttgaaagag gaccgaaagc attcgatttg cagatttacg
      421 ttaaggatga tgtcggtgtc acagatgtgc aagtcctgac tgttcaggtg acagatgtga
      481 acgagcctcc tcagttccaa ggcatcctgg cacaaggttt aaacctctat gtcatagaaa
      541 gaacaaaccc tggattcatt taccaggtgg aggcatttga cccagaagac acaagccgga
      601 gcatacccct cgggtatttc ctcatttctc cctcgaagaa cttcagaatg tctgcaaatg
      661 gcaccctctt ctctaccaca gaactggact ttgaagcagg gcacaagagc ttcaacctcc
      721 ttgtgggagt aagagacagt gggaacctcg aagcctccac agctctccag gtgactattg
      781 tgaacatcaa tgatgagacc ccgcgcttta ccagccccag gagagtgtac tctgtcccag
      841 aagaagtgcc tctaggaacc atggtggcga acatcacagc aatggatcct gatgatgagg
      901 gttttcctgg ccgcctcctc tacagcatca ctaccaccag cagctatttc atggtagacc
      961 agctgacagg gacaatccaa gtggcccgaa ggctagatcg agatgcaggc gaactgagac
     1021 agaatcccat catttctctg gaagttcgag tgagagacag gccctctggg ggtcaggaga
     1081 accgcatgca gataaccttc attgtggaag acatcaatga caaccctgca acatgcagaa
     1141 agctcacttt cagcattatg ttgcctgaaa gaacagccaa cgggacgttg cttttggacc
     1201 tgaacaagtt ctgctttgat gatgacagcg aagctccaaa caacaaattc aactttacca
     1261 cgccatctgg agcggggagc agccgcagat tttcacagca tccagctggc tctgggagaa
     1321 ttgtgttgac tggtgatcta gactatgaaa atccaagcaa ccttgcagtt ggcaatgtgt
     1381 acaatgtgat gatccaagtg caggatgctg ctcctccata ctacaaaaaa agcatctaca
     1441 tctctatcct aacaaggcca gaaaatgaat ttcctctcat ctttgaaagg ccatcgtacg
     1501 tgtttgatgt gccagaaaga agaccagcta gaacccagat tgggcaggtg cgagctaccg
     1561 atgcagactt cccccggact ccagtggtgt attccgtatc cagaggaggg tccagcctcc
     1621 agtacccaaa catattttgg attaacccca agacaggaga actccaacta ataactcaag
     1681 cagaccatga aaccacttct gtctacattc tcaccgtcga ggccaccaac ggcgaggaca
     1741 ggagctcagt cactgttact gtgaacatcc ttggagaaaa tgatgaaaag ccagtatgta
     1801 ctccaaattt ttacttcatg gccatcccag tggatctaaa agttggcaca aacattcaga
     1861 atttcaagct gacgtgcact gaccttgatt ctagccccag ttcttttcga tactccattg
     1921 gctcaggcaa catcaacaat catttcacct tctctcccaa tgccggctcc aacatcacgc
     1981 gcctgctgct ggcttcccgc tttgactaca gcagcctcga taccgtctgg gactaccagc
     2041 tgcttgtcca cattactgat gacaacttgc tgtctggcag cacaaaagcc aaggctcttg
     2101 ttgaaacagg gacagtgact ctgagtgtta aagtcattcc tcacccaacc acaaccatca
     2161 caactcccag gcccaggatt acctaccaga tccgcaggga aaacgtgtac tccacatctg
     2221 catggtatgt gccgttcatc gtcactctgg gatccatact tcttcttggc cttctggggt
     2281 ccctgatggt gctgctgtcc aaagcagtct acagacattg ctcctctacg accaggaggg
     2341 acaggaaacc tctgacaaag aaaagagaca caaaaagaat gaatagagag gccatggtgg
     2401 aatctatcca gatgaactct gtctttgatg gagaagccgt agatccagtg accggggaaa
     2461 tatatgaatt caactcaaaa actggtgcca ggaggtggaa aggcccatta acccagctgc
     2521 cgaattggcc cgagcccagt acccagcaca gaggcacagc tggagaagca ccagtcccta
     2581 aacacacagg gagataacag gcatctccca gaggcaacca ctattctctt catcgttata
     2641 gattagtttt gccttgtaaa aactcataaa agtgggagac catcattctg ggctcacagc
     2701 ggtgatccag ttcttctcta cctgatgccc ttctacgact ttgccccagt gggaggaggc
     2761 agagccatgg caggacacgg tcgcagagct ctaagatggt ggctccagca tcaaagactg
     2821 agcggtcccg ttgccctgct tccttgatga ctcttgggat tgtcagacct tttcatttta
     2881 gcttttcaaa tgaagatgac tcgtggaatg aaatacattt gttttcaaag ctgaaataat
     2941 atcagtctga aat
//
