LOCUS       NM_001393529            2518 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus cadherin related family member 18 (Cdhr18), mRNA.
ACCESSION   NM_001393529
VERSION     NM_001393529.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2518)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2518)
  AUTHORS   Hansen J, Floss T, Van Sloun P, Fuchtbauer EM, Vauti F, Arnold HH,
            Schnutgen F, Wurst W, von Melchner H and Ruiz P.
  TITLE     A large-scale, gene-driven mutagenesis approach for the functional
            analysis of the mouse genome
  JOURNAL   Proc Natl Acad Sci U S A 100 (17), 9918-9922 (2003)
   PUBMED   12904583
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC171681.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMN00849374, SAMN00849382
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-104               AC171681.1         45011-45114
            105-301             AC171681.1         54244-54440
            302-473             AC171681.1         59832-60003
            474-562             AC171681.1         62551-62639
            563-657             AC171681.1         87277-87371
            658-765             AC171681.1         91421-91528
            766-962             AC171681.1         93329-93525
            963-1140            AC171681.1         95089-95266
            1141-1303           AC171681.1         97039-97201
            1304-1406           AC171681.1         98494-98596
            1407-1505           AC171681.1         102748-102846
            1506-1738           AC171681.1         114046-114278
            1739-1910           AC171681.1         127794-127965
            1911-2152           AC171681.1         129621-129862
            2153-2352           AC171681.1         130845-131044
            2353-2372           AC171681.1         133120-133139
            2373-2440           AC171681.1         134063-134130
            2441-2518           AC171681.1         135718-135795
FEATURES             Location/Qualifiers
     source          1..2518
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 7.07 cM"
     gene            1..2518
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /note="cadherin related family member 18"
                     /db_xref="GeneID:238939"
                     /db_xref="MGI:MGI:2685127"
     exon            1..104
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     CDS             62..2518
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /codon_start=1
                     /product="uncharacterized protein LOC238939 precursor"
                     /protein_id="NP_001380458.1"
                     /db_xref="GeneID:238939"
                     /db_xref="MGI:MGI:2685127"
                     /translation="MLPSQLFFVLLAASGVQAAPNFVVENAGPLLENASYHTRAATVT
                     MSLSPHTSLVGDPVILNASPTAHPFVLSYRSSHVWDIIITGVPKLDFEVVALYSLTIY
                     AKDNHGATASQTIFVQIEDVNEPPVFIGSLTQKNQVTEIYITEDTAYGTIIYRAAAED
                     PEGAVLEYSISPESSGFTIDSTGAISTARDLDFESGMRSFSLIIKVVDPGGLFATGNL
                     KIFLVNVNNKDPILACSLFNIENGVLRVTFTNSTLHRKVNITLDEEIPVGKMIAMCQA
                     TDEDNLGGLTFGLDTVDDYFAVDKEKGTVVTTNHLDVEKTGFASALSFSIKACDGDQR
                     CTVIPVATYIRGINDNSPFCDQYLIRYIGKEEIAKDTVVAKLSCHDLDKPPDTIHYAP
                     SSGPVGSGQLFEQVPDTKNFIQVTKDLDYENPEVVAAGHMYEMMISVFDDLHPSHTVT
                     VTILVEIAPENDFSPKFQALHYVFSVPETSEAFYKVGQVTAIDEDHPPDCLTYKIIKG
                     HSQAVQMFWIHPFSGVIELTTQPDYESVRQYNLTVEAVDCDRDHPRTAVATVTVDIED
                     ENDEAPVCTPYLYTAIIPDNVIAGTNVNGLKLNCHDRDSQDFEMRFEMASGNENLHFQ
                     LDPTRGSNTPKLVVKNPFHFESGTELQLQYHLVVHVIDDNLQYGKAVKSKTGTAVIDI
                     NVMRTSTPIPPTSSEQRKGLTIVYTAINTYKSSDWYVPFIFTLMAVFFVGLVSWMCFL
                     LWRYGNIKTKSQRMTKEVSKSKFKGMKYVVGDRSQREKNVITETRNKNLEVLTETTVY
                     ETVFDGEATDPGMMFLYHLN"
     exon            105..301
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            302..473
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            474..562
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            563..657
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            658..765
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            766..962
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            963..1140
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            1141..1303
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            1304..1406
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            1407..1505
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            1506..1738
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            1739..1910
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            1911..2152
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            2153..2352
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            2353..2372
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            2373..2440
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
     exon            2441..2518
                     /gene="Cdhr18"
                     /gene_synonym="Gm281"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atcttagaag ttagccaact ggaacagcat ttctgcagca gccagagccc ttgattcaac
       61 catgcttcct tcccagctct tctttgtact gcttgctgcc tcaggtgttc aagctgctcc
      121 aaattttgtt gtggagaatg cgggccccct cctggaaaat gcctcttatc atacacgggc
      181 tgccacggtc accatgtctc tctcacctca cacttctctg gttggagatc ctgttatcct
      241 caatgccagc cccacagcac atccttttgt gctgtcctac agatcctcac atgtgtggga
      301 tataattatc actggagtac ccaagctgga ctttgaggtg gtagcgctct attccttgac
      361 aatatatgcc aaagacaacc atggggcaac agcgtcccag accatttttg tccagatcga
      421 agatgtgaat gagcctcctg ttttcattgg gtcacttaca cagaaaaatc aagttactga
      481 gatttacatc acagaggaca ctgcctatgg caccatcatt tacagagcag cagctgagga
      541 cccagagggt gcggtgttgg agtactccat ttccccagag agctctggct tcaccatcga
      601 cagcactggg gcaatttcca cagcaagaga tttggatttt gagagcggca tgagaagttt
      661 ttcactgatt attaaagtgg ttgatcctgg aggcctgttt gctactggaa atctaaagat
      721 tttcctcgtc aatgtcaaca ataaggaccc tattcttgct tgcagcttgt tcaatattga
      781 aaacggggtc ttgagagtta ccttcacaaa ttcaactctg caccgcaaag tcaacatcac
      841 actggatgaa gaaattccag ttgggaagat gattgcaatg tgccaggcaa ctgatgaaga
      901 taacctggga ggtttaacct ttggactaga tacagtggat gattattttg cagtggacaa
      961 agagaagggg accgtggtta cgactaacca tctagatgtg gagaaaactg gctttgcaag
     1021 tgctctgtcc ttctctatta aggcatgtga tggtgatcag aggtgtacag tgattccagt
     1081 ggctacctac attcgtggca ttaatgacaa ctctcctttc tgtgatcagt atctcattcg
     1141 gtacataggc aaggaggaga ttgcaaaaga cacagttgtt gctaagctct catgccatga
     1201 ccttgacaaa cctcctgata caattcatta tgctccaagt tctggccctg taggttctgg
     1261 acaactattt gagcaagtgc cagataccaa aaatttcatt caggttacca aagatctgga
     1321 ttatgaaaac ccagaggtgg ttgcagcagg gcacatgtat gaaatgatga tttcagtatt
     1381 tgatgaccta catccatctc atacagtgac ggtgacaatc cttgtggaga ttgcccctga
     1441 gaatgatttc agccccaaat ttcaagcctt gcactatgta ttttcagttc cagaaacatc
     1501 agaagctttc tacaaagttg gacaagtgac tgctattgat gaggaccacc caccagactg
     1561 tctgacatac aagataatca agggacacag ccaggctgta caaatgtttt ggattcaccc
     1621 cttctctgga gtgatcgaac tcaccactca gccagactat gagtcagtga ggcaatataa
     1681 cctcacagtt gaagctgtgg attgtgacag agaccatcca cgcactgcag tggccacagt
     1741 tactgttgac attgaagatg agaatgatga agcacctgtc tgcacaccct atctatatac
     1801 agcaatcatc cctgacaatg ttattgctgg gacaaatgtc aatggcctca aactaaactg
     1861 tcatgacaga gattcacaag attttgaaat gcgctttgaa atggcttctg gaaatgaaaa
     1921 tcttcatttc caattagacc caactcgggg ttcaaatact ccaaaattag ttgtgaagaa
     1981 tcctttccac tttgagtctg gaactgaact gcagctgcaa tatcatcttg tggtacatgt
     2041 catcgatgac aacctgcaat atggcaaagc tgtcaagtcc aagacaggaa ctgctgtcat
     2101 agatatcaat gtgatgagaa ccagcacacc aattcctcca accagttctg aacagagaaa
     2161 gggtctgacc attgtgtaca cagctatcaa cacgtacaaa agcagtgact ggtatgttcc
     2221 tttcatcttt actctgatgg ctgttttctt tgttggattg gtttcctgga tgtgttttct
     2281 actctggaga tatggaaaca ttaagaccaa gtctcagaga atgaccaagg aagtctccaa
     2341 gtcaaaattc aaaggaatga aatatgttgt aggagataga agtcaaagag aaaaaaatgt
     2401 tatcacagaa accaggaaca aaaacctaga agtgttaaca gaaaccactg tatatgagac
     2461 tgtgtttgat ggagaagcca ctgatccagg tatgatgttt ctgtatcatt tgaattaa
//
