LOCUS       XM_006520095            6002 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus cadherin 18 (Cdh18), transcript variant X3,
            mRNA.
ACCESSION   XM_006520095
VERSION     XM_006520095.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000081.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006520095.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6002
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="15"
     gene            1..6002
                     /gene="Cdh18"
                     /gene_synonym="B230220E17Rik; Cdh14l;
                     Tg(GFAP-APOE_i4)1Hol"
                     /note="cadherin 18; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 mRNAs, 3 ESTs, 3843
                     long SRA reads, 57 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     7 samples with support for all annotated introns"
                     /db_xref="GeneID:320865"
                     /db_xref="MGI:MGI:1344366"
     CDS             557..2929
                     /gene="Cdh18"
                     /gene_synonym="B230220E17Rik; Cdh14l;
                     Tg(GFAP-APOE_i4)1Hol"
                     /codon_start=1
                     /product="cadherin-18 isoform X1"
                     /protein_id="XP_006520158.1"
                     /db_xref="GeneID:320865"
                     /db_xref="MGI:MGI:1344366"
                     /translation="MRITSTSCICPVLVCLCFVQRCYGTAHHSSIKVTRNQTKHTEGE
                     TEVHHRPKRGWVWNQFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFI
                     IDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFT
                     DGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIR
                     TALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLY
                     VPESAQVGSAVGKIKANDADTGSNADMTYSITNGDGIGVFSISTDKDTREGILSLKKP
                     LNYEKKKSYTLNIEGANTHLDFRFSHLGPFKDATMLKVIVGDVDEPPLFSMPSYVMEV
                     YENAKIGTIVGTVLAQDPDSANSLVRYFINHSTEEERFFNIDANTGTIKTSKVLDREE
                     TPWYNITVTASENDNPDLLSHVSVGIRVLDVNDNPPELAREYDIVVCENSKPGQVIHT
                     ITATDKDDFANGPRFHFFLDERLPMNPNFTLKDNEDNTASILTRRRRFSRTMQDVYYL
                     PIMISDGGIPSLSSSSTLTIRVCACERDGRVRTCHAEAFLSSAGLSTGALIAILLCVV
                     ILLAIVVLFITLRRGKKEPLIISEEDVRENVVTYDDEGGGEEDTEAFDITALRNPAAA
                     EEFTYRRDIRPEVKLTPRHQTLSTLESIDVQEFIKQRLAEADLDPSVPPYDSLQTYAY
                     EGQRSEAGSISSLDSATTQSDQDYHYLGDWGPEFKKLAELYGEIESERTT"
ORIGIN      
        1 gcttcagaca ggctagattg attacatagc agcagcagga gctaagactt agagctgaga
       61 tgtcagctct gagagccagc gagaaataac agacttcacc ttggaatagc tcaacatact
      121 cgtgcagcat taaagcggat ttcaagagaa aacaagaatc aagccctaac ccagcacctt
      181 tccctttcta cattgcaaag agaacagttt catgctccag gactcagcca ctaataccta
      241 acactcagca acttcaatac ctaagaagaa atccaccacc aaacattcat agactgaact
      301 gtaaggtgga aaatgatgat ctgtgctaac ctacagtgac aacttgggat acaatggctg
      361 cccctgtgtt tctactcatg cataggatgt gaatatggtc tgacctttcc ctgatgggca
      421 gctaaatcat ggacagatta aatgacttac tttggactgt ccttccaaaa gatgctttgg
      481 cttgtctctt gaatgcatac tgagcccttg caggccacga agacaagaag gactgtgaac
      541 gggaagcgat cttacaatga gaattacgag cacatcttgc atctgtccag tcctcgtgtg
      601 tctctgtttt gtgcagaggt gttatggaac tgctcaccac agctccatta aggtgaccag
      661 aaaccaaacc aaacacactg aaggggaaac tgaagtacac catcgtccca agaggggatg
      721 ggtatggaac cagttctttg ttttagaaga acatatggga ccagacccac agtatgttgg
      781 aaaactgcac tccaactccg acaaaggtga tggttctgtc aagtacatcc tgactggaga
      841 aggggccggg actatattta tcattgatga caccacaggt gacatccact caaccaaaag
      901 cctggacaga gagcagaaga ctcactatgt gctccatgcc caggctattg acagacggac
      961 aaacaagcct cttgaacctg agtctgagtt catcatcaaa gtgcaagata ttaatgacaa
     1021 tgccccaaag ttcacagatg gaccatacat cgttactgtg cctgaaatgt cagatatggg
     1081 tacctctgtt ctgcaggtga cagctacaga tgcagatgac cccacctatg ggaacagtgc
     1141 tcgagttgtt tacagtatcc tgcaaggaca accttatttc tctgtagatc ctaaaacagg
     1201 agtcattcga acagctttac acaacatgga tagagaagcc agagagcatt actcagtggt
     1261 cattcaagcc aaagacatgg ctgggcaagt tggcggactt tctggatcca ccactgtcaa
     1321 tattaccttg actgatgtca atgacaaccc accacggttc ccacagaaac actatcaact
     1381 gtatgttcct gagtctgctc aagttggttc agctgttggg aaaatcaaag caaatgatgc
     1441 agacacagga tcaaatgcag atatgaccta ctccatcact aatggagacg ggattggagt
     1501 gttctctatc tccacggaca aggacaccag agaaggaata ctttccttaa aaaagccact
     1561 gaactatgag aaaaagaagt cttacacact caacattgaa ggagcaaaca cacatctgga
     1621 tttccgtttt tcccacttgg gtccatttaa ggatgccacc atgctgaagg ttattgttgg
     1681 ggatgtggat gagccaccac tcttttctat gccttcctat gtcatggaag tctatgaaaa
     1741 tgccaagatt gggacaattg ttggcactgt cttggctcag gatccagaca gtgctaacag
     1801 cttagtaagg tatttcatca atcacagtac tgaagaggag agatttttca atattgatgc
     1861 caatactgga accattaaga catcaaaagt actggataga gaagaaacac catggtacaa
     1921 tatcacagtg actgcttcag aaaacgacaa tcctgatttg ctgagccatg tctccgtggg
     1981 tattagagtt ctggatgtca atgacaatcc acctgaactt gccagggaat atgatattgt
     2041 tgtctgtgag aattctaagc ctggtcaggt tatccacacc atcactgcca ctgataaaga
     2101 tgactttgcc aatggaccga gatttcattt ttttcttgat gagcgcctgc ccatgaaccc
     2161 aaatttcaca cttaaggaca atgaagataa cacagccagc attctgacaa ggcggaggag
     2221 atttagtcga actatgcagg atgtgtatta tctgcccatt atgatctctg acggtggaat
     2281 cccctctctc agcagcagca gcaccctcac catcagggtt tgtgcatgcg agagagatgg
     2341 gcgcgtgcgg acctgccatg cagaagcctt cctgtcctcc gctggtttga gcacaggagc
     2401 cctaatcgct attcttctct gtgttgtcat tcttcttgcc attgtggtcc tttttatcac
     2461 cttgaggcgt ggcaaaaaag agcccttgat catttccgag gaggatgtgc gagagaatgt
     2521 ggtgacatat gatgacgagg gaggagggga ggaagacacc gaagccttcg acatcacagc
     2581 tttgcggaat cctgccgcag cagaggagtt cacgtaccgc agagacattc ggcctgaagt
     2641 gaagctcact ccgagacatc agaccttgtc caccctggag agcatagacg ttcaggagtt
     2701 tattaagcaa agactcgcag aagccgacct ggaccccagc gtgccccctt atgactctct
     2761 tcagacttat gcctacgagg gccagcggtc agaagctggg tctatcagct cactggactc
     2821 cgcaaccacg caatcagacc aggattatca ctaccttgga gactgggggc ccgagtttaa
     2881 gaagttagct gaactctatg gagaaataga atctgaaaga acaacttagg gggttccttt
     2941 tttttttttt tttttttttt ttttttggag ctatgtagaa tttgcttcct gaccaagtgg
     3001 agatatgacc tcaataggac aaggaagtca agccgaaaca gtacttggaa ctgagcaagc
     3061 tgtacacagc tcctgtagaa acaagtgccc tttttatgat cagaaaaaaa aaaatgggtt
     3121 atttaattgg aagaaagtca aatattaaaa gtaataataa taacagatta aaaagttatt
     3181 gtcccttgtg tatattttca aatgctcaat aaagtctatg gtactgttta attaagaata
     3241 tatgaacaaa gcccaacagt gaatatttat ttcatgatat tgtgacttat ttttttcccc
     3301 aaagcaagaa ttaaacaaag gaggtttaaa aatcactgtc agatccttac actggacatg
     3361 gaaacataca gaggcggtca tagcctcctt taaagttttc tgggtggaac ttcgagaccc
     3421 ctagtctgct attgtaacag atctcactat gctgttcctt tgctgaaatt acacgaggta
     3481 tcccctgcgt tccaggcgac tctgacgtgg acttgaatat cccgtttttc ctcagccctc
     3541 cccacttctg ttctccatca cacaaagctg atggagcctg ggggtttgct gcctgcacta
     3601 tgacatatgc aacttcagtg cgctggacat gcgctgttct cagcatggag acgaagttct
     3661 ctgtcccacc catcatacct tatgttaaca ggagacatct ttttaaaatg gatagaatga
     3721 aaggactctg atcatcagat acgtcaggga actttcgatt taaaagataa acctcatcct
     3781 gtttaaaaca tggaaaacct ttcttttctc tccattctta tgccctttcg ttttagtacg
     3841 tttgtacctt aaactggttg tctttttttt tttttttttt ttctctctga ctcgtttata
     3901 cttcatcatg gttcaagtat cttaggtagt cttctgtaat gtgtaggtca catatgtacc
     3961 acctcttgtt ctttagctgc cttcatcctt ctcagttaca ctccttagtc cttgcacatg
     4021 tggtatttac aagagaatac ataggagcag gccaaagaaa tgaaggaatc actcagataa
     4081 cccctgaaaa gatcccaagg gtctatgtat ttcagggtcc ccaactgcag aatagaagtg
     4141 acagtaattt tcctgcctac ctcacagggc tgttgtgagg gcaaagcagg cactgttttc
     4201 acaagtacaa agtactctgc tacctgaaga tttgcacaca tctaaattac caatgctatt
     4261 agcttcaaca tatagacata catacacttc actagacgat gatcttcgga tgagaaaatt
     4321 ttgcgaaacc ttcaagaatg aagctactgt taacataaat atgtaatata aaatactaat
     4381 aattttaata ttttccaaaa tgtcatcttc tttataattt cttggggctt tttaaacttt
     4441 taattaagga atatatcatt cccgtgttct gggggcttta tgtaaaaaat aaatagaaca
     4501 ttaaggtact acactttgaa attacctcgt ctatgtattc ctggtaaatt ggaattttta
     4561 aacacataag gtataaacta tttgaaggaa tatatgtttt tcatttaatc tttaaattta
     4621 ttataatata atggccccaa acgttctatg atgctttctg attccaccct tgtgcaaatt
     4681 ttgggactgt gactctgttt gaaactgcct tgtgctgctg tcatattcca gttttgaggt
     4741 ttggcaactg agtttaattt gaataactct cagtttgtgt tctaagcctg gggaataaag
     4801 tggaatccaa gctttttaca acatcttagc ttcccagatg ctgctttctc gtttttttaa
     4861 acaaacaaca ggatgcattc ctgtgtgtgg ctaaatcaaa aagcacagag aggctgaagg
     4921 accagcctaa ggctacgcat ggtctcatta ggctaacaag gaagcatccc ttacctgagg
     4981 agagagcaca ccccgcgtcc agtgcaatga gtgtggatgt tgtcctttcc tctgagaggg
     5041 ccaggagagt ctggttttca cagtccattc aagttttaga ttgagatttt gcaaaattta
     5101 ctcatatttt aaatatataa atatactgac cgcattattc acaaatgagt gcttacagga
     5161 tgaaactatg ggtgtccttt caactcggtc aaagttaatg tctaccctat tgttatgagt
     5221 attaaaatct ttccatagtg tcttggaatg cggggttata actgttacct aattctaaat
     5281 acatatcaat tataatgata tattgcttct aactctctga tgttaatcta agtatgaaga
     5341 tagatttgga cctttttgag tctgggagta gttgaagttc ctgtaaaatt tgttaataag
     5401 gccaatctcg gtcctacatt tgatatggac tctgaaaggc aaacgttatt taattatttt
     5461 aagtacaaac caggtttcat ggctctattt ctagtcttcg aatcaagaaa atagcaatta
     5521 aatatcatgc tctgtgaatt ggtcactcac ttaaccctca ataggttact ttttaaacct
     5581 acagtttaat aaatataaaa ggaaagcttg catagagttc agagagctat ttccatatgt
     5641 actgtttgct tactttaaat gcaataatag ctaccgatcc acacaccact gatgccttga
     5701 tgaatatttt ccaaatcaag tttatacttg acataataca gcatcaatta actatcaatg
     5761 tactacttat tttatagatc tattctatac aaatgggggg tttataaacc taaaagaaat
     5821 actaactgaa aatatttttc tttacctaag gtgtgtctct tagcagcatt tattagtgca
     5881 cagagattga gaaacatttt tttttctttt tttgtagaaa ccactacaga gtatgtcaga
     5941 aatgcatgct tcagtgaatc tgttgaaata ctgaataaat ttcaacggga ttaaaaatga
     6001 aa
//
