LOCUS       XM_006537584            3163 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus cadherin 17 (Cdh17), transcript variant X2,
            mRNA.
ACCESSION   XM_006537584
VERSION     XM_006537584.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006537584.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3163
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..3163
                     /gene="Cdh17"
                     /gene_synonym="HPT-1; HPT-1/LI"
                     /note="cadherin 17; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 7 ESTs, 25 long SRA
                     reads, 8 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:12557"
                     /db_xref="MGI:MGI:1095414"
     CDS             83..2566
                     /gene="Cdh17"
                     /gene_synonym="HPT-1; HPT-1/LI"
                     /codon_start=1
                     /product="cadherin-17 isoform X1"
                     /protein_id="XP_006537647.1"
                     /db_xref="GeneID:12557"
                     /db_xref="MGI:MGI:1095414"
                     /translation="MVSAQLHFLCLLTLYLTCGYGEEGKFSGPLKPMTFSIFEGQEPS
                     QVIFQFKTNPPAVTFELTGETDGIFKIEKDGLLYHTRALDRETRAVHHLQLAALDSHG
                     AIVDGPVPITIEVKDINDNRPTFLQSKYEGSVRQNSRPGKPFMYVNATDLDDPATPNG
                     QLFYQIVIQLPQINDVMYFQIDSKTGAISLTPEGSQELDPVKNPSYNLVVSVKDMGGQ
                     SENSFSDTTYVDISIRENIWKAPEPVEIRENSTDPHPIKITQVQWNDPGAQYSLVNKE
                     KLSPFPFSIDQEGNIYVTQALDREEKNSHVFFATAKDENGKPLAYPLEIYVKVIDIND
                     NPPTCLSPVTVFEVQENEPLGNSIGIFEAHDMDEANNINSILKYKLVDQTPKVPSDGL
                     FLIGEYEGKVQLSKQSLKKQDSPQYNLSIEVSDVDFKTLCYIQVNVIDINDQIPIFET
                     SNYGSKTLSEDTAIGSTILIIQATDADEPFTGSSKILYKIVQGDTEGRLEVVTDPTTN
                     AGYVKIKKPLDFETQPVSSIVFQAENPEPLVKGIEYNASSFASFELIVTDVNEVPVFP
                     QRIFQANVSEDAAVGSRVGNVTARDPEGLTVSYSLKGNMRGWLKIDSVTGEIFSAAPL
                     DRETESVYRVQVVATEVGGSSLSSTADFHLVLTDVNDNPPRLAKDYTGLFFCHPLSAP
                     GSLIFEVTDDDQQSLRRPKFTFALGREGLQSDWEVSKINGTHARLSTRHTRFEEQVYN
                     IPIRINDGGQPPMEGTVFLPVTFCQCVEGSCFRPAGRQDGIPTVGMAVGILLTTFLVI
                     GIILAVVFIRMRKDKVENPQSPENKPLRS"
ORIGIN      
        1 atgacaaaga attggtgaga ccatggagtt ctctgaaatg gtcaactgag acctgtccag
       61 gagtccaagt gaagagagca agatggtgtc tgcccagctt cacttcctgt gtcttctcac
      121 actttatttg acctgtggat atggcgaaga agggaagttc agcggtcccc tgaagcccat
      181 gacattctcc atttttgaag gccaagaacc gagtcaagtc atattccagt ttaagaccaa
      241 ccctccagct gtgactttcg agctaacggg agagacagat ggtatattta agatagaaaa
      301 ggatggactt ctgtatcaca caagagccct ggacagagaa acaagagcgg ttcatcatct
      361 gcagcttgca gccttggatt ctcatggagc tatagtggac ggtccagtcc ccatcaccat
      421 agaagtcaag gacatcaatg acaaccgacc cacgtttctc cagtcaaaat atgaaggctc
      481 agtgaggcag aactctcgcc caggaaagcc tttcatgtat gtcaatgcta cagatctgga
      541 tgatccggct actcccaatg gccagctttt ttatcaaatt gtcatccaac ttccccaaat
      601 caacgatgtt atgtactttc aaatcgacag caaaacaggg gcaatatcgc ttaccccaga
      661 aggatcccag gaattggatc cagtgaagaa tccttcctac aacctggtgg tctcggtgaa
      721 ggacatgggg ggccagagtg agaattcctt cagtgatact acatatgtag atatttctat
      781 tagagagaat atctggaaag caccagaacc cgtggagatt agagaaaact cgactgatcc
      841 tcaccccatc aaaatcactc aggtgcagtg gaatgaccca ggggcccagt attccttagt
      901 caacaaggag aagctgtcgc cgttcccatt ctcgatcgac caagaaggaa atatttatgt
      961 gactcaggcc ttggaccggg aggaaaagaa ctcacatgtt ttctttgcaa ctgccaagga
     1021 tgagaatgga aaaccacttg catatccact ggaaatttat gtgaaagtta ttgacattaa
     1081 tgacaaccca ccgacatgtc tgtctccagt gactgtattt gaagtccagg agaatgaacc
     1141 attgggtaac agcatcggga tctttgaggc ccatgatatg gacgaagcta acaacatcaa
     1201 cagtattttg aaatacaagc ttgtagacca aacacccaaa gttccctcag atggactttt
     1261 tctcattggt gaatatgagg gaaaggttca gttaagtaaa cagtccttga agaagcaaga
     1321 cagtcctcag tacaacttaa gtatcgaggt gtctgacgta gatttcaaga ctctctgtta
     1381 tattcaagtc aacgttattg atatcaatga tcagattccc atctttgaaa catcaaatta
     1441 tggaagcaag actctgtctg aagacaccgc catcggatcc accatcctaa tcatccaagc
     1501 tacagatgct gatgagccct ttacagggag ctctaaaatc ctgtacaaga ttgtacaggg
     1561 agacacggag ggaagactag aagttgtcac agatcccacg accaatgcag gatatgtcaa
     1621 gatcaaaaag cctcttgatt ttgaaactca accagttagc agcattgtgt tccaagcgga
     1681 aaatcctgag ccactggtga aaggcataga gtacaatgct agttcttttg cctccttcga
     1741 gctgattgtg acggatgtga atgaagtgcc tgtgttcccc cagcgaatat tccaagcaaa
     1801 cgtcagcgag gatgctgctg tgggcagtag agtgggcaac gtgactgcca gggatcctga
     1861 aggcctgact gtgagttatt cactgaaagg caatatgaga ggctggctta aaatcgactc
     1921 tgtcactggt gagatattta gtgctgctcc gctggatagg gaaacagaaa gtgtgtatcg
     1981 agtacaagtg gtggccactg aagtaggtgg gtcctctctg agttctacgg cagatttcca
     2041 cctggtcctc acagatgtga atgacaaccc ccctcgccta gctaaggact acacaggctt
     2101 gttcttctgc catcccctca gtgcccctgg gagcctcatc tttgaggtca ctgacgatga
     2161 ccagcagtca cttcggaggc ccaagtttac attcgccctt ggcagagaag gcttacaaag
     2221 tgactgggaa gtttcaaaaa tcaatggtac acatgctaga ctctccacca ggcacacacg
     2281 ctttgaggaa caagtttata acattccaat ccgcatcaat gatggggggc agccacccat
     2341 ggaagggact gtcttcttac cagttacttt ctgccagtgt gtggaaggaa gctgtttccg
     2401 gccagcaggc agacaggatg ggatacccac tgtgggcatg gcagttggta tacttctgac
     2461 cacatttctg gtcattggta taattttagc agttgtcttc atccgcatga ggaaagataa
     2521 agttgaaaat ccgcagtccc ctgagaataa gcctctgaga agctgaattt gaaaagaaat
     2581 ggtcaagtct gtgcaccaag cactatatca atgcctcagc tgtttaattt catccaaaat
     2641 gtgaactata attggtagag tttatgcatc atgggctata tctggtcccc agctgtttaa
     2701 tctcataatt tcatccaaaa tgtgaactgt aatttctttg atggcatgcc cttcttgtcc
     2761 tgcaacattt tatgctactt agatatttta tgttctgcag acattagagt tattctccat
     2821 ttccccataa cattttcctc ctttacaaaa gccttagctt cataacttga accttcccct
     2881 ctgggcagga agaggagctg agtacacacc ctgtgttgtt gcttcagagg acgtagctgt
     2941 tatctatcac caaatttcct aggttccact tatcctttct gtttcagcct gtgctccttc
     3001 atctcttagc attacactga atttaaaatg tgtcaaacag aagaacaaag tgaagtcctg
     3061 gttgggggtt ggggggtaag tgggagcctt gttctttaac atgggcaaca gcttctctgt
     3121 gctgttaatg ttgttaatgg cggtcctcca acttggctat ggc
//
