LOCUS       NM_178626               3138 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus CDC42 small effector 2 (Cdc42se2), mRNA.
ACCESSION   NM_178626
VERSION     NM_178626.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3138)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   2  (bases 1 to 3138)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   3  (bases 1 to 3138)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ072588.1, AK135775.1, AK160934.1 and BY688282.1.
            
            On Jul 18, 2009 this sequence version replaced NM_178626.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK145931.1, AK135775.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164141 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-49                CJ072588.1         43-91
            50-1475             AK135775.1         1-1426
            1476-3051           AK160934.1         1461-3036
            3052-3138           BY688282.1         334-420
FEATURES             Location/Qualifiers
     source          1..3138
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 32.13 cM"
     gene            1..3138
                     /gene="Cdc42se2"
                     /gene_synonym="2810404F18Rik; SPEC2"
                     /note="CDC42 small effector 2"
                     /db_xref="GeneID:72729"
                     /db_xref="MGI:MGI:1919979"
     exon            1..144
                     /gene="Cdc42se2"
                     /gene_synonym="2810404F18Rik; SPEC2"
                     /inference="alignment:Splign:2.1.0"
     exon            145..298
                     /gene="Cdc42se2"
                     /gene_synonym="2810404F18Rik; SPEC2"
                     /inference="alignment:Splign:2.1.0"
     exon            299..611
                     /gene="Cdc42se2"
                     /gene_synonym="2810404F18Rik; SPEC2"
                     /inference="alignment:Splign:2.1.0"
     exon            612..713
                     /gene="Cdc42se2"
                     /gene_synonym="2810404F18Rik; SPEC2"
                     /inference="alignment:Splign:2.1.0"
     exon            714..828
                     /gene="Cdc42se2"
                     /gene_synonym="2810404F18Rik; SPEC2"
                     /inference="alignment:Splign:2.1.0"
     exon            829..3138
                     /gene="Cdc42se2"
                     /gene_synonym="2810404F18Rik; SPEC2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3080..3085
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cdc42se2"
                     /gene_synonym="2810404F18Rik; SPEC2"
                     /note="hexamer: AATAAA"
     polyA_site      3097
                     /gene="Cdc42se2"
                     /gene_synonym="2810404F18Rik; SPEC2"
                     /note="major polyA site"
ORIGIN      
        1 tccgcctctg cgcgccagag cctaggcggg agggcggagc ccgaagcggg gagcgcagct
       61 gcttggtgtg tggagatcct ggaagcttcg gagccggcgc tcggagccgc gcggctggag
      121 caggcggcgg agacaaaggc gacgataggg ccagtgttga gtgaaacaaa cgcagaaacc
      181 aaaagagaag acgtcttcaa ggaacaactt atgctaatga gtctgaagag tctcctgtgt
      241 gtgtctttca gcatagtctc cattcagaga gctgagtgag tggccacatt gatgagtgac
      301 ctgctgccgt ctctgaacca aagctgttct ttccttccca ctgacctgga accagtgtct
      361 gtagaaacgg aagcagagaa aagaaacaat cagacatccc tttcaatcaa cttgagacat
      421 ttgactccag ggacggaggc acggtgaaat aaagttattt tggcgacatt cctcgctctg
      481 agggcgcacg ttgtggagct tcctgtctga agacttggag ccctcggtgg tgctcgctca
      541 ggcctcggac tgagagcatg agtgaattct ggttgtgttt caactgctgt attgcagagc
      601 agcctcagcc taagaggcga cgacggattg accgaagtat gatcggagag ccaaccaact
      661 ttgtgcacac agctcacgta ggatccggag acctatttag tgggatgaac tcagtcagct
      721 ccattcagaa ccagatgcag tccaagggag gctatggagg tggaatgcct gccaacgtgc
      781 agatgcagct cgtggacacc aaggcaggat agccctggtc cctgcactgt catcgtgaat
      841 tcctgtattt tctctgtcca cagttctata atatttttgt cttgtgattg gatttctttt
      901 attttaatta taaaaaagaa gtgtggcggc aatctgttca cccctgtgat ctccagcaga
      961 gacgttcccg ctccaaggaa ggcagcgtca ggccgacctg ccttgccgcc agcggcatgc
     1021 atgcctggga ctctgacaga gttctttgga tcttagctga attttcaatg tttaattgac
     1081 atggatcgga tcttagcatg gtcttttctg tgactgctag cactgtattg taatttttcc
     1141 attttaagcc ttttcattgc acctccagcc cctctgcctt atgatttaac tggtaaacaa
     1201 agacctgtaa ttactgccac catttatgta tattttgaag gtatgagacc cacaagcaca
     1261 atagtccttt tcatctgttg gaaacttgag cggagcgcgt ctgcacactc catggtgctg
     1321 ctcagagggg accccatggg atgccagaca tccatcctga gctgctgtgg cctgaggatg
     1381 ctcctctttc agaggaggct ctttacagat attccaaatg ggttctggtc cgactagagc
     1441 agtgaaagga aagcctgcgt tcagaggcgg ttgcttggct gtaaatgttc agtgtattta
     1501 tttgagagta aggacctgtg attgtgagca gatatagcct gtatctgagt gttgtgaagc
     1561 ccattcagtt tctcagcatc ttcgtcctgt tagctcttct ttacgtacct gttgctgttt
     1621 tctatttagt catttggtgt caaattgttt ccactagctg tgtgttgaaa ttctggcctc
     1681 tgctaccagc tgtgacttgc agagtccttg gccttccagt gttccactta ctgtggaggc
     1741 tgtggcagct tccaacagcc acctgctgcc tggctgattc acagtgatca gccctcacag
     1801 tgacactctg tggttagtaa gaggcctttg ctcaggtccc attctgttcc tcttccctgc
     1861 tgagtatagg tagctggatc ctgcggtcca ctttgcttac tatctaactg cctttgattg
     1921 attgattgat tgattgatta gcatttgtgc agaatatgga tcttaactga gattagagtg
     1981 ctgaaggcat gtaggtcctt gtctagagaa gctgtgttct tttctgcctt tgcctgcccc
     2041 tgtcctgaga atgctgactg aagagccact gaaggctgac gcaggcaaag ctgaaagcat
     2101 ttctcctata tttcttctga acataactta gcagtagggt ggaacactgg atgacctgat
     2161 tctttgattt tgcaattctt accgttctta ggtgtcaatc ctgagcacag agaatttctc
     2221 tgtcaaggag aaccattttc tcactgttgt ctttcattta ccgtatggac actgcactct
     2281 agagtctgtc attctgctta gccagggtga ggttcctgcc agggcactgc tgtgtgcaga
     2341 ctctttctgt ataacagaca gggatttctt ggcatcattg gcactgatag atgggacagc
     2401 acagggagac attgtcccct cccccatcac tgtttgctgc tccaaggcca gtcattaata
     2461 agccaaaggc tcctgaagcc cctgatggtc ctggcagcct ctgacctctc agcacagtga
     2521 gacattgtac acagtgcacc gcctggtgcc ctggagggtt ccaataaggt caagagaatg
     2581 tacagagtaa cctggtacat ggtgtttatg gaggcctaag gatgccggca aaggtgcagg
     2641 gagacatact tcccacctcc ccacatggga ttgtaaacct tgggaactcc tttgttcccc
     2701 cagtcacaca tctcattttt aaattggagc taataggatt ttgtacccag aatttattat
     2761 atagttaata cttctctgaa atacatggta acaactagta agcaagagat accgcagatt
     2821 gcagcagtgt gctgggcaca gcttctccag tgggcctgga gagtttgtcc attagcttcc
     2881 ctgtggtcat taaatggagc tgctagggta gagcagtggc ctgatctgct cagtgacttg
     2941 tgctcagcac cagaagacaa gatggacgta tttttataat ctaagcatac tttttttgta
     3001 cattgtgttc attcttgaat aaagtgagct cactgttggc ttgtagatat taaaaaaagg
     3061 aaagtattga ttttgattca ataaatgttt tcttttagtc tttgtttgga tttttcttct
     3121 aataaaattt cactcacc
//
