LOCUS       NM_007657               1227 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus CD9 antigen (Cd9), mRNA.
ACCESSION   NM_007657
VERSION     NM_007657.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1227)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1227)
  AUTHORS   Fukuoka,A., Wilson,G.J., Pitmon,E., Koumbas Foley,L., Johnsson,H.,
            Pingen,M. and Graham,G.J.
  TITLE     Disruption of placental ACKR3 impairs growth and hematopoietic
            development of offspring
  JOURNAL   Development 151 (4) (2024)
   PUBMED   38300826
REFERENCE   3  (bases 1 to 1227)
  AUTHORS   Zheng,G., Su,Y., Wei,L., Yao,Y., Wang,Y., Luo,X., Wang,X.,
            Ruan,X.Z., Li,D. and Chen,Y.
  TITLE     SCAP contributes to embryonic angiogenesis by negatively regulating
            KISS-1 expression in mice
  JOURNAL   Cell Death Dis 14 (4), 249 (2023)
   PUBMED   37024487
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1227)
  AUTHORS   Lopez-Tello,J. and Sferruzzi-Perri,A.N.
  TITLE     Characterization of placental endocrine function and fetal brain
            development in a mouse model of small for gestational age
  JOURNAL   Front Endocrinol (Lausanne) 14, 1116770 (2023)
   PUBMED   36843585
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1227)
  AUTHORS   Cao,R., Takechi,M., Wang,X., Furutera,T., Nojiri,T., Koyabu,D. and
            Li,J.
  TITLE     Temporal and regulatory dynamics of the inner ear transcriptome
            during development in mice
  JOURNAL   Sci Rep 12 (1), 21196 (2022)
   PUBMED   36476755
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1227)
  AUTHORS   Kagawa,T., Mekada,E., Shishido,Y. and Ikenaka,K.
  TITLE     Immune system-related CD9 is expressed in mouse central nervous
            system myelin at a very late stage of myelination
  JOURNAL   J Neurosci Res 50 (2), 312-320 (1997)
   PUBMED   9373040
REFERENCE   7  (bases 1 to 1227)
  AUTHORS   Schmidt,C., Kunemund,V., Wintergerst,E.S., Schmitz,B. and
            Schachner,M.
  TITLE     CD9 of mouse brain is implicated in neurite outgrowth and cell
            migration in vitro and is associated with the alpha 6/beta 1
            integrin and the neural adhesion molecule L1
  JOURNAL   J Neurosci Res 43 (1), 12-31 (1996)
   PUBMED   8838570
REFERENCE   8  (bases 1 to 1227)
  AUTHORS   Youn,B.S., Jang,I.K., Broxmeyer,H.E., Cooper,S., Jenkins,N.A.,
            Gilbert,D.J., Copeland,N.G., Elick,T.A., Fraser,M.J. Jr. and
            Kwon,B.S.
  TITLE     A novel chemokine, macrophage inflammatory protein-related
            protein-2, inhibits colony formation of bone marrow myeloid
            progenitors
  JOURNAL   J Immunol 155 (5), 2661-2667 (1995)
   PUBMED   7650394
REFERENCE   9  (bases 1 to 1227)
  AUTHORS   Seldin,M.F., Rochelle,J.M., Tomlinson,M.G. and Wright,M.D.
  TITLE     Mapping of the genes for four members of the transmembrane 4
            superfamily: mouse Cd9, Cd63, Cd81, and Cd82
  JOURNAL   Immunogenetics 42 (5), 422-425 (1995)
   PUBMED   7590978
REFERENCE   10 (bases 1 to 1227)
  AUTHORS   Rubinstein,E., Billard,M., Plaisance,S., Prenant,M. and Boucheix,C.
  TITLE     Molecular cloning of the mouse equivalent of CD9 antigen
  JOURNAL   Thromb Res 71 (5), 377-383 (1993)
   PUBMED   8236164
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK002251.1 and BC070474.1.
            
            On Feb 16, 2018 this sequence version replaced NM_007657.3.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC070474.1, AK151443.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5                 AK002251.1         1-5
            6-1227              BC070474.1         1-1222
FEATURES             Location/Qualifiers
     source          1..1227
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 59.32 cM"
     gene            1..1227
                     /gene="Cd9"
                     /gene_synonym="Tspan29"
                     /note="CD9 antigen"
                     /db_xref="GeneID:12527"
                     /db_xref="MGI:MGI:88348"
     exon            1..187
                     /gene="Cd9"
                     /gene_synonym="Tspan29"
                     /inference="alignment:Splign:2.1.0"
     CDS             122..802
                     /gene="Cd9"
                     /gene_synonym="Tspan29"
                     /codon_start=1
                     /product="CD9 antigen"
                     /protein_id="NP_031683.1"
                     /db_xref="CCDS:CCDS20551.1"
                     /db_xref="GeneID:12527"
                     /db_xref="MGI:MGI:88348"
                     /translation="MPVKGGSKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSI
                     FEQENNHSSFYTGVYILIGAGALMMLVGFLGCCGAVQESQCMLGLFFGFLLVIFAIEI
                     AAAVWGYTHKDEVIKELQEFYKDTYQKLRSKDEPQRETLKAIHMALDCCGIAGPLEQF
                     ISDTCPKKQLLESFQVKPCPEAISEVFNNKFHIIGAVGIGIAVVMIFGMIFSMILCCA
                     IRRSREMV"
     exon            188..290
                     /gene="Cd9"
                     /gene_synonym="Tspan29"
                     /inference="alignment:Splign:2.1.0"
     exon            291..388
                     /gene="Cd9"
                     /gene_synonym="Tspan29"
                     /inference="alignment:Splign:2.1.0"
     exon            389..463
                     /gene="Cd9"
                     /gene_synonym="Tspan29"
                     /inference="alignment:Splign:2.1.0"
     exon            464..562
                     /gene="Cd9"
                     /gene_synonym="Tspan29"
                     /inference="alignment:Splign:2.1.0"
     exon            563..652
                     /gene="Cd9"
                     /gene_synonym="Tspan29"
                     /inference="alignment:Splign:2.1.0"
     exon            653..736
                     /gene="Cd9"
                     /gene_synonym="Tspan29"
                     /inference="alignment:Splign:2.1.0"
     exon            737..1197
                     /gene="Cd9"
                     /gene_synonym="Tspan29"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1178..1183
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cd9"
                     /gene_synonym="Tspan29"
                     /note="hexamer: AATAAA"
     polyA_site      1197
                     /gene="Cd9"
                     /gene_synonym="Tspan29"
                     /note="major polyA site"
ORIGIN      
        1 ggcacttttt aaaagtggag cctcaggcca gcccctagcc gcagcgtgtc tcagtcggtt
       61 gtcgagtccc ttctgtccca gtcgttcgtg cctcttgtcc cacgcaactc cagcttgtac
      121 catgccggtc aaaggaggta gcaagtgcat caaatacctg ctcttcggat ttaacttcat
      181 cttctggctc gctggcattg cagtgcttgc tattggacta tggctccgat tcgactctca
      241 gaccaagagc atcttcgagc aagagaataa ccattccagt ttctacacag gagtgtacat
      301 tctgattgga gccggggccc tcatgatgct ggttggtttc ctgggctgct gtggagctgt
      361 acaagagtcc cagtgcatgc tgggattgtt cttcgggttc ctcttggtga tattcgccat
      421 tgagatagcc gccgccgtct ggggctatac ccacaaggat gaggtgatta aagaactcca
      481 ggagttttac aaggacacct accaaaagtt acggagcaag gatgaacccc agcgggaaac
      541 actcaaagcc atccatatgg cgttggactg ctgtggcata gctggtcctt tggagcagtt
      601 tatctcggac acctgcccca agaaacagct tttggaaagt ttccaggtta agccctgccc
      661 tgaagccatc agtgaggtct tcaacaacaa gttccacatc attggagcag tgggtatcgg
      721 catcgccgtg gtgatgatct tcggcatgat cttcagcatg atcctgtgct gcgccatccg
      781 caggagccga gaaatggtct agagtctgcc caaccccgag caggaacaac ggccctgaag
      841 actgtccggg ccatttgggt tttttttgcc actaatatta gtattcatta tgcatttcta
      901 aataacagtc attctgtttg tctttttaat gctttattca ttattgacat ttgtagttga
      961 gggatccggg ggttcaattt attttgattt ttttttttgg ttgtttattt ttgcttgtta
     1021 tgttaagcaa aaatcctgca atgaaaggta ctatatttgc cagactctag acataagata
     1081 ttgtacataa agagaatttt ttttgccttt aaatagataa aagtatctat cagataaaaa
     1141 tcaggttgta agttatattg aagacaattt gatacataat aaaagattat aacagtgaaa
     1201 aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
