LOCUS       NM_007649               1205 bp    mRNA    linear   ROD 31-JUL-2024
DEFINITION  Mus musculus CD48 antigen (Cd48), transcript variant 1, mRNA.
ACCESSION   NM_007649
VERSION     NM_007649.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1205)
  AUTHORS   Li,R., Galindo,C.C., Davidson,D., Guo,H., Zhong,M.C., Qian,J.,
            Li,B., Ruzsics,Z., Lau,C.M., O'Sullivan,T.E., Vidal,S.M., Sun,J.C.
            and Veillette,A.
  TITLE     Suppression of adaptive NK cell expansion by macrophage-mediated
            phagocytosis inhibited by 2B4-CD48
  JOURNAL   Cell Rep 43 (3), 113800 (2024)
   PUBMED   38386559
  REMARK    GeneRIF: Suppression of adaptive NK cell expansion by
            macrophage-mediated phagocytosis inhibited by 2B4-CD48.
REFERENCE   2  (bases 1 to 1205)
  AUTHORS   Kim,S.H., Lim,K.H., Yang,S. and Joo,J.Y.
  TITLE     Boosting of tau protein aggregation by CD40 and CD48 gene
            expression in Alzheimer's disease
  JOURNAL   FASEB J 37 (1), e22702 (2023)
   PUBMED   36520044
  REMARK    GeneRIF: Boosting of tau protein aggregation by CD40 and CD48 gene
            expression in Alzheimer's disease.
REFERENCE   3  (bases 1 to 1205)
  AUTHORS   Li,B., Lu,Y., Zhong,M.C., Qian,J., Li,R., Davidson,D., Tang,Z.,
            Zhu,K., Argenty,J., de Peredo,A.G., Malissen,B., Roncagalli,R. and
            Veillette,A.
  TITLE     Cis interactions between CD2 and its ligands on T cells are
            required for T cell activation
  JOURNAL   Sci Immunol 7 (74), eabn6373 (2022)
   PUBMED   35930657
REFERENCE   4  (bases 1 to 1205)
  AUTHORS   Yorgan,T.A., Peters,S., Amling,M. and Schinke,T.
  TITLE     Osteoblast-specific expression of Panx3 is dispensable for
            postnatal bone remodeling
  JOURNAL   Bone 127, 155-163 (2019)
   PUBMED   31202927
REFERENCE   5  (bases 1 to 1205)
  AUTHORS   Guo,H., Cranert,S.A., Lu,Y., Zhong,M.C., Zhang,S., Chen,J., Li,R.,
            Mahl,S.E., Wu,N., Davidson,D., Waggoner,S.N. and Veillette,A.
  TITLE     Deletion of Slam locus in mice reveals inhibitory role of SLAM
            family in NK cell responses regulated by cytokines and LFA-1
  JOURNAL   J Exp Med 213 (10), 2187-2207 (2016)
   PUBMED   27573813
  REMARK    Erratum:[J Exp Med. 2016 Sep 19;213(10):2227. doi:
            10.1084/jem.2016055209072016c. PMID: 27621421]
REFERENCE   6  (bases 1 to 1205)
  AUTHORS   Brownstein,D.G. and Gras,L.
  TITLE     Chromosome mapping of Rmp-4, a gonad-dependent gene encoding host
            resistance to mousepox
  JOURNAL   J Virol 69 (11), 6958-6964 (1995)
   PUBMED   7474114
REFERENCE   7  (bases 1 to 1205)
  AUTHORS   Morse,H.C. 3rd.
  TITLE     Genetic nomenclature for loci controlling surface antigens of mouse
            hemopoietic cells
  JOURNAL   J Immunol 149 (10), 3129-3134 (1992)
   PUBMED   1431091
  REMARK    Review article
            Erratum:[J Immunol 1993 Mar 15;150(6):2563]
REFERENCE   8  (bases 1 to 1205)
  AUTHORS   Kato,K., Koyanagi,M., Okada,H., Takanashi,T., Wong,Y.W.,
            Williams,A.F., Okumura,K. and Yagita,H.
  TITLE     CD48 is a counter-receptor for mouse CD2 and is involved in T cell
            activation
  JOURNAL   J Exp Med 176 (5), 1241-1249 (1992)
   PUBMED   1383383
REFERENCE   9  (bases 1 to 1205)
  AUTHORS   Oakey,R.J., Watson,M.L. and Seldin,M.F.
  TITLE     Construction of a physical map on mouse and human chromosome 1:
            comparison of 13 Mb of mouse and 11 Mb of human DNA
  JOURNAL   Hum Mol Genet 1 (8), 613-620 (1992)
   PUBMED   1301170
REFERENCE   10 (bases 1 to 1205)
  AUTHORS   Wong,Y.W., Williams,A.F., Kingsmore,S.F. and Seldin,M.F.
  TITLE     Structure, expression, and genetic linkage of the mouse BCM1 (OX45
            or Blast-1) antigen. Evidence for genetic duplication giving rise
            to the BCM1 region on mouse chromosome 1 and the CD2/LFA3 region on
            mouse chromosome 3
  JOURNAL   J Exp Med 171 (6), 2115-2130 (1990)
   PUBMED   1693656
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC091521.19 and AK084984.1.
            
            On Feb 13, 2018 this sequence version replaced NM_007649.4.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK084984.1, X53526.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-35                AC091521.19        67328-67362
            36-1205             AK084984.1         2-1171
FEATURES             Location/Qualifiers
     source          1..1205
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 79.54 cM"
     gene            1..1205
                     /gene="Cd48"
                     /gene_synonym="Bcm-1; BCM1; BLAST; BLAST-1; BLAST1;
                     MEM-102; Sgp-60; SLAMF2"
                     /note="CD48 antigen"
                     /db_xref="GeneID:12506"
                     /db_xref="MGI:MGI:88339"
     exon            1..175
                     /gene="Cd48"
                     /gene_synonym="Bcm-1; BCM1; BLAST; BLAST-1; BLAST1;
                     MEM-102; Sgp-60; SLAMF2"
                     /inference="alignment:Splign:2.1.0"
     exon            176..478
                     /gene="Cd48"
                     /gene_synonym="Bcm-1; BCM1; BLAST; BLAST-1; BLAST1;
                     MEM-102; Sgp-60; SLAMF2"
                     /inference="alignment:Splign:2.1.0"
     exon            479..745
                     /gene="Cd48"
                     /gene_synonym="Bcm-1; BCM1; BLAST; BLAST-1; BLAST1;
                     MEM-102; Sgp-60; SLAMF2"
                     /inference="alignment:Splign:2.1.0"
     exon            746..1205
                     /gene="Cd48"
                     /gene_synonym="Bcm-1; BCM1; BLAST; BLAST-1; BLAST1;
                     MEM-102; Sgp-60; SLAMF2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1120..1125
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cd48"
                     /gene_synonym="Bcm-1; BCM1; BLAST; BLAST-1; BLAST1;
                     MEM-102; Sgp-60; SLAMF2"
                     /note="hexamer: GATAAA"
     polyA_site      1144
                     /gene="Cd48"
                     /gene_synonym="Bcm-1; BCM1; BLAST; BLAST-1; BLAST1;
                     MEM-102; Sgp-60; SLAMF2"
                     /note="major polyA site"
ORIGIN      
        1 atacgacttc cggttttggg ttttgcttcc tgattgaagg gcaggcgccc tgacttctct
       61 tacagttgtc tccagtgttc tggggaagct tctctaagta ttatgtgctt cataaaacag
      121 ggatggtgtc tggtcctgga actgctactg ctgcccttgg gaactggatt tcaaggtcat
      181 tcaataccag atataaatgc caccaccggc agcaatgtaa ccctgaaaat ccataaggac
      241 ccacttggac catataaacg tatcacctgg cttcatacta aaaatcagaa gattttagag
      301 tacaactata atagtacaaa gacaatcttc gagtctgaat ttaaaggcag ggtttatctt
      361 gaagaaaaca atggtgcact tcatatctct aatgtccgga aagaggacaa aggtacctac
      421 tacatgagag tgctgcgtga aactgagaac gagttgaaga taaccctgga agtatttgat
      481 cctgtgccca agccttccat agaaatcaat aagactgaag cgtcgactga ttcctgtcac
      541 ctgaggctat cgtgtgaggt aaaggaccag catgttgact atacttggta tgagagctcg
      601 ggacctttcc ccaaaaagag tccaggatat gtgctcgatc tcatcgtcac accacagaac
      661 aagtctacat tttacacctg ccaagtcagc aatcctgtaa gcagcaagaa cgacacagtg
      721 tacttcactc taccttgtga tctagccaga tcttctggag tatgttggac tgcaacttgg
      781 ctagtggtca caacactcat cattcacagg atcctgttaa cctgacaaga actcttctca
      841 cccaagaagg caacttggaa gcacagagtc ttgccttcat ccctagcagt gttcctagcc
      901 agcgaagcaa ctctggctct attggacaaa ggaaaatgtg ttactgaacg tctgcgagag
      961 tttgcatgca tgctctatga aacaagcaca ggaccttgta cagtgctcca ccactgacct
     1021 gtgtgcccag tcctttacaa agatttcaaa tcaacctttt aaaaactgtg cataatatct
     1081 aattttatat accctagttg tttcccaaca tatattaaag ataaatgcat tctttttacc
     1141 aaaatgtgac tatattattt tcatgttttc atatctcttt ttaaaataaa ttcttttaaa
     1201 aaact
//
