LOCUS       NM_001368239             953 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus CD300C molecule (Cd300c), mRNA.
ACCESSION   NM_001368239 XM_017314637
VERSION     NM_001368239.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 953)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 953)
  AUTHORS   Rodrigues,P.F., Kouklas,A., Cvijetic,G., Bouladoux,N., Mitrovic,M.,
            Desai,J.V., Lima-Junior,D.S., Lionakis,M.S., Belkaid,Y., Ivanek,R.
            and Tussiwand,R.
  TITLE     pDC-like cells are pre-DC2 and require KLF4 to control homeostatic
            CD4 T cells
  JOURNAL   Sci Immunol 8 (80), eadd4132 (2023)
   PUBMED   36827419
REFERENCE   3  (bases 1 to 953)
  AUTHORS   Kaitani,A., Izawa,K., Maehara,A., Isobe,M., Takamori,A.,
            Matsukawa,T., Takahashi,M., Yamanishi,Y., Oki,T., Yamada,H.,
            Nagamine,M., Uchida,S., Uchida,K., Ando,T., Maeda,K., Nakano,N.,
            Shimizu,T., Takai,T., Ogawa,H., Okumura,K., Kitamura,T. and
            Kitaura,J.
  TITLE     Leukocyte mono-immunoglobulin-like receptor 8 (LMIR8)/CLM-6 is an
            FcRgamma-coupled receptor selectively expressed in mouse tissue
            plasmacytoid dendritic cells
  JOURNAL   Sci Rep 8 (1), 8259 (2018)
   PUBMED   29844322
  REMARK    GeneRIF: CLM-6 is an FcRgamma-coupled receptor selectively
            expressed in mouse tissue plasmacytoid dendritic cells
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 953)
  AUTHORS   Chung,D.H., Humphrey,M.B., Nakamura,M.C., Ginzinger,D.G.,
            Seaman,W.E. and Daws,M.R.
  TITLE     CMRF-35-like molecule-1, a novel mouse myeloid receptor, can
            inhibit osteoclast formation
  JOURNAL   J Immunol 171 (12), 6541-6548 (2003)
   PUBMED   14662855
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL607025.21.
            
            On Jan 31, 2019 this sequence version replaced XM_017314637.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849388,
                              SAMN01164133 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-163               AL607025.21        36671-36833         c
            164-511             AL607025.21        35893-36240         c
            512-632             AL607025.21        33850-33970         c
            633-953             AL607025.21        32431-32751         c
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 80.56 cM"
     gene            1..953
                     /gene="Cd300c"
                     /gene_synonym="Clm6"
                     /note="CD300C molecule"
                     /db_xref="GeneID:387565"
                     /db_xref="MGI:MGI:3032626"
     exon            1..163
                     /gene="Cd300c"
                     /gene_synonym="Clm6"
                     /inference="alignment:Splign:2.1.0"
     CDS             91..780
                     /gene="Cd300c"
                     /gene_synonym="Clm6"
                     /note="CMRF-35-like molecule 6; CMRF35-like molecule 6;
                     CD300 antigen-like family member C; CD300C antigen"
                     /codon_start=1
                     /product="CMRF35-like molecule 6 precursor"
                     /protein_id="NP_001355168.1"
                     /db_xref="CCDS:CCDS88281.1"
                     /db_xref="GeneID:387565"
                     /db_xref="MGI:MGI:3032626"
                     /translation="MNPRVIRLWLPSAVLLSLVSDMHGGHFPVRGPSTVTGTVGESLS
                     VSCQYEKKLKTKKKIWCKWKSNVLCKDIVKTSASEEARNGRVSIRDHPDNLTFTVTLE
                     NLTLEDAGTYMCMVDIGFFYDAYLQIDKSFKVEVFVVPVKGSRPGNGINILASPTSSA
                     VHTQPNVTTDDTIPAPSPELRSLLSSPHFWILVSLKLPLFLSMLGALLWVNRPQRCSG
                     GSSAWPCYENQ"
     exon            164..511
                     /gene="Cd300c"
                     /gene_synonym="Clm6"
                     /inference="alignment:Splign:2.1.0"
     exon            512..632
                     /gene="Cd300c"
                     /gene_synonym="Clm6"
                     /inference="alignment:Splign:2.1.0"
     exon            633..953
                     /gene="Cd300c"
                     /gene_synonym="Clm6"
                     /inference="alignment:Splign:2.1.0"
     regulatory      918..923
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cd300c"
                     /gene_synonym="Clm6"
                     /note="hexamer: AATAAA"
     polyA_site      942
                     /gene="Cd300c"
                     /gene_synonym="Clm6"
                     /note="major polyA site"
ORIGIN      
        1 ggcaagaggg cattctactg tctagaagga gacatgtcct tctcctctct tggccctggt
       61 gtgggtgcag gagacagctg agctgaagaa atgaatccca gagtaataag attgtggctg
      121 ccttcagctg tgctactctc cttggtttca gatatgcatg gaggccattt ccctgtgcgt
      181 ggtcccagca ctgtcacagg cactgtgggg gagtcactca gtgtgtcctg tcagtatgag
      241 aagaaattga aaactaaaaa aaaaatctgg tgcaaatgga aatctaatgt actgtgtaaa
      301 gatattgtca agaccagtgc ctcagaagaa gctaggaatg gccgagtgtc catcagggac
      361 catccagaca acctcacctt cacagtgacc ttggagaacc tcaccctgga ggatgcaggc
      421 acctacatgt gtatggtgga tataggattc ttttatgatg cctacttaca gatcgataag
      481 tccttcaagg ttgaggtgtt cgtggtccca gtcaaaggtt cacgccctgg gaacggtatc
      541 aacattctgg cttcccccac atcctcagcg gtgcacactc agcccaacgt gaccacagac
      601 gacacaattc ctgctcccag ccctgagctt cggtctcttc tgagcagccc ccacttctgg
      661 atcctggtgt ctctgaagtt gcccctgttc ctgagcatgc ttggtgcctt gctctgggtg
      721 aacaggcctc agaggtgctc tgggggaagc agcgcttggc cctgttatga gaaccagtga
      781 agtctgtcat caaggccctg tccctggaca cagctcctct agtggctgag aagagccagg
      841 aaatgtgtat tttttagaat gctctgaaac ttttagaaga ttctttgtgc tgtattaaac
      901 acatagagaa tttacccaat aaacacctat atatttaaat aatttcgggc tag
//
