LOCUS       NM_001005854            2122 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus CD200 molecule like 1 (Cd200l1), mRNA.
ACCESSION   NM_001005854 XM_156182 XM_358838
VERSION     NM_001005854.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Kojima T, Tsuchiya K, Ikemizu S, Yoshikawa S, Yamanishi Y, Watanabe
            M and Karasuyama H.
  TITLE     Novel CD200 homologues iSEC1 and iSEC2 are gastrointestinal
            secretory cell-specific ligands of inhibitory receptor CD200R
  JOURNAL   Sci Rep 6, 36457 (2016)
   PUBMED   27819346
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC124636.23 and AC117783.9.
            
            On Apr 22, 2010 this sequence version replaced NM_001005854.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            CCDS Note: The coding region has been updated to correct mismatches
            and indels versus the reference genome sequence. The update results
            in an upstream in-frame AUG start codon which adds 87aa to the
            N-terminus and a PFAM immunoglobulin V-set domain.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC054854.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-116               AC124636.23        140194-140309
            117-455             AC117783.9         146585-146923       c
            456-755             AC117783.9         145205-145504       c
            756-867             AC117783.9         122590-122701       c
            868-2122            AC117783.9         119513-120767       c
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 29.53 cM"
     gene            1..2122
                     /gene="Cd200l1"
                     /gene_synonym="Gm1749; Gm609; isec1; iSEC2"
                     /note="CD200 molecule like 1"
                     /db_xref="GeneID:208166"
                     /db_xref="MGI:MGI:2685455"
     exon            1..116
                     /gene="Cd200l1"
                     /gene_synonym="Gm1749; Gm609; isec1; iSEC2"
                     /inference="alignment:Splign:2.1.0"
     CDS             89..991
                     /gene="Cd200l1"
                     /gene_synonym="Gm1749; Gm609; isec1; iSEC2"
                     /note="913020L22Rik; iSEC1 protein, intestinal secretory
                     cell protein 1"
                     /codon_start=1
                     /product="uncharacterized protein LOC208166"
                     /protein_id="NP_001005854.2"
                     /db_xref="CCDS:CCDS28197.2"
                     /db_xref="GeneID:208166"
                     /db_xref="MGI:MGI:2685455"
                     /translation="MLLLCAQESESSQRIKHNTYERAVLGGNISIFCNFTSLENVEQI
                     TWQKIQGSLPQNIGTYSHKYGEKILPPYVNRLQCKILEPSTYFMTIQGVTFEDEACYK
                     CLFNTFPHGSHGGQTCLTIITVSELVTELRSAPGSEDLHSLLCSAVGKPAPGISVYPS
                     QVTVQAPQEYFAQNANATVTVTKIYNISLKTARSLGLQDLVVSMTHSVRNEEKIVRLP
                     VNQGGTTNPCLNWMITAIAFIILFLVSCIISAVLYIYFQKKRSNNMPEPSSTQMPNPL
                     STLVPTPPSTETENLMRHHCQSET"
     exon            117..455
                     /gene="Cd200l1"
                     /gene_synonym="Gm1749; Gm609; isec1; iSEC2"
                     /inference="alignment:Splign:2.1.0"
     exon            456..755
                     /gene="Cd200l1"
                     /gene_synonym="Gm1749; Gm609; isec1; iSEC2"
                     /inference="alignment:Splign:2.1.0"
     exon            756..867
                     /gene="Cd200l1"
                     /gene_synonym="Gm1749; Gm609; isec1; iSEC2"
                     /inference="alignment:Splign:2.1.0"
     exon            868..2122
                     /gene="Cd200l1"
                     /gene_synonym="Gm1749; Gm609; isec1; iSEC2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctagaaaacg cgatgttgtg actgttagtg aagactctca cccatagatt cgacggactg
       61 ttcactcctt tgcatcctcc atctcttaat gcttcttctc tgtgcgcaag aatcagagtc
      121 ttcacagagg ataaagcata acacttatga gagggctgtc ctgggaggaa acatttccat
      181 cttctgcaac tttacaagtc tggaaaatgt tgaacaaatc acctggcaaa aaatccaagg
      241 ctcattacct caaaatattg gcacttacag tcataaatat ggagaaaaaa ttctaccacc
      301 atatgtaaac aggttgcagt gcaagatctt ggaacccagt acctacttca tgactatcca
      361 aggagtgaca tttgaagatg aagcctgcta caagtgtctg tttaacactt ttccacatgg
      421 cagccatgga ggacaaacct gcctcaccat tataactgta tctgaactag taactgagct
      481 ccggtctgct cctggctctg aagatcttca tagccttctt tgttcagctg tgggaaagcc
      541 tgcccctgga atctccgttt acccttcaca agtcacagtg caggcaccac aagagtactt
      601 tgctcagaac gccaatgcca cggtgactgt cactaaaatc tacaacatct ctttgaaaac
      661 tgcgaggtcc ctgggtctcc aggacttggt tgtgtcaatg actcactctg taagaaacga
      721 agagaaaata gtccgattgc cagtcaatca aggaggtacc acgaatcctt gtttaaactg
      781 gatgataact gcgattgcat tcatcatttt gtttttggtt tcatgcatca tcagtgctgt
      841 tctctacatt tatttccaaa agaaaaggtc aaataacatg cccgagccat catcaacaca
      901 gatgcctaac ccactatcaa cactggtacc cacaccacca tcaacagaga ctgagaactt
      961 aatgagacat cactgccagt ctgagacata attgattgta tgtgattttt attctgtcac
     1021 tatattttta aatttaagaa tgtttcaaat ttttgaaaat gtattcacta gcagcaatta
     1081 tcatgttaga aataagtgga gacaagaatt tgtttcaagt gaggttttat ttatgttaat
     1141 gtctttacat tttgaagtta aaattagatt taactgatac ataataatta tagatattta
     1201 tggagtatca tgtatatttt gatagcaagt taaaggtatc tgtttactca gacatttatc
     1261 atttctttgt gcctaaaact tttcaaatct ttcctgtaag gttttaaaaa tatgcagcac
     1321 acagtcatta tctataatta ccctcctgtg cagtagctca agaaagtctc acttctaact
     1381 ataaacttag ttttgaccac tttttcctca tctctcctac cctctactaa cccagtctct
     1441 aaacaatacc attctactct caactctgtg acgtgaattg tgtattcctt atcttgatca
     1501 aatcacttat cacttgtctt taagtaactg gatttttttt ggggggggct ttgtatggat
     1561 gaaccccgag ttccatccac attgttgcaa atgacagaat ttccatttat ggccaaataa
     1621 tatttacacc gctgtgtgta ttatgttttc ttactctgct cattagttct agacaggtag
     1681 ttgctttagt cttcatctgt tgtgaatagt gttacaaaaa aactgtggaa gtccagatat
     1741 cttctcaaca ttttcaacat attgatttct tttccttttc aatatatatc caataatgga
     1801 atagcctgat tatatagcag tttgattttt aacttttcga gaatccttca tggtgttttc
     1861 agtaatggca tattaattta tatttcacct acactatgtg aggattccct tctccatgtg
     1921 catacatcag ttttctttgg tgccttaaat aataaatact cctgtgtggt aagctgctac
     1981 cttctggtgg cttgatttgc atttccatga tgactaatga tattaagcat ttttcatgtc
     2041 ccattaaatg ccattttgta tgccttcctt cagatatgtc tatttaagtt tattgccaat
     2101 aaatcaagta atttttattg aa
//
