LOCUS       NM_007639               1834 bp    mRNA    linear   ROD 01-OCT-2024
DEFINITION  Mus musculus CD1d1 antigen (Cd1d1), transcript variant 1, mRNA.
ACCESSION   NM_007639
VERSION     NM_007639.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1834)
  AUTHORS   Siewert,L.K., Fromm,K., Dehio,C. and Pinschewer,D.D.
  TITLE     Cutting Edge: Redundant Roles for MHC Class II-, CD1d-, and
            MR1-restricted T Cells in Clearing Bartonella Infection
  JOURNAL   J Immunol 213 (5), 553-558 (2024)
   PUBMED   38984869
  REMARK    GeneRIF: Cutting Edge: Redundant Roles for MHC Class II-, CD1d-,
            and MR1-restricted T Cells in Clearing Bartonella Infection.
REFERENCE   2  (bases 1 to 1834)
  AUTHORS   Wang,Y., Zou,Y., Jiang,Q., Li,W., Chai,X., Zhao,T., Liu,S.,
            Yuan,Z., Yu,C. and Wang,T.
  TITLE     Ox-LDL-induced CD80+ macrophages expand pro-atherosclerotic NKT
            cells via CD1d in atherosclerotic mice and hyperlipidemic patients
  JOURNAL   Am J Physiol Cell Physiol 326 (6), C1563-C1572 (2024)
   PUBMED   38586879
  REMARK    GeneRIF: Ox-LDL-induced CD80[+] macrophages expand
            pro-atherosclerotic NKT cells via CD1d in atherosclerotic mice and
            hyperlipidemic patients.
REFERENCE   3  (bases 1 to 1834)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   4  (bases 1 to 1834)
  AUTHORS   Lei,Z., Yu,J., Wu,Y., Shen,J., Lin,S., Xue,W., Mao,C., Tang,R.,
            Sun,H., Qi,X., Wang,X., Xu,L., Wei,C., Wang,X., Chen,H., Hao,P.,
            Yin,W., Zhu,J., Li,Y., Wu,Y., Liu,S., Liang,H., Chen,X., Su,C. and
            Zhou,S.
  TITLE     CD1d protects against hepatocyte apoptosis in non-alcoholic
            steatohepatitis
  JOURNAL   J Hepatol 80 (2), 194-208 (2024)
   PUBMED   38438948
  REMARK    GeneRIF: CD1d protects against hepatocyte apoptosis in
            non-alcoholic steatohepatitis.
REFERENCE   5  (bases 1 to 1834)
  AUTHORS   Amable,L., Ferreira Martins,L.A., Pierre,R., Do Cruseiro,M.,
            Chabab,G., Serge,A., Kergaravat,C., Delord,M., Viret,C.,
            Jaubert,J., Liu,C., Karray,S., Marie,J.C., Irla,M., Georgiev,H.,
            Clave,E., Toubert,A., Lucas,B., Klibi,J. and Benlagha,K.
  TITLE     Intrinsic factors and CD1d1 but not CD1d2 expression levels control
            invariant natural killer T cell subset differentiation
  JOURNAL   Nat Commun 14 (1), 7922 (2023)
   PUBMED   38040679
  REMARK    GeneRIF: Intrinsic factors and CD1d1 but not CD1d2 expression
            levels control invariant natural killer T cell subset
            differentiation.
            Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1834)
  AUTHORS   Morse,H.C. 3rd.
  TITLE     Genetic nomenclature for loci controlling surface antigens of mouse
            hemopoietic cells
  JOURNAL   J Immunol 149 (10), 3129-3134 (1992)
   PUBMED   1431091
  REMARK    Review article
            Erratum:[J Immunol 1993 Mar 15;150(6):2563]
REFERENCE   7  (bases 1 to 1834)
  AUTHORS   Lacasse,J. and Martin,L.H.
  TITLE     Detection of CD1 mRNA in Paneth cells of the mouse intestine by in
            situ hybridization
  JOURNAL   J Histochem Cytochem 40 (10), 1527-1534 (1992)
   PUBMED   1382091
REFERENCE   8  (bases 1 to 1834)
  AUTHORS   Chen,C.Y., Salles,G., Seldin,M.F., Kister,A.E., Reinherz,E.L. and
            Shipp,M.A.
  TITLE     Murine common acute lymphoblastic leukemia antigen (CD10 neutral
            endopeptidase 24.11). Molecular characterization, chromosomal
            localization, and modeling of the active site
  JOURNAL   J Immunol 148 (9), 2817-2825 (1992)
   PUBMED   1374101
REFERENCE   9  (bases 1 to 1834)
  AUTHORS   Oakey,R.J., Howard,T.A., Hogarth,P.M., Tani,K. and Seldin,M.F.
  TITLE     Chromosomal mapping of the high affinity Fc gamma receptor gene
  JOURNAL   Immunogenetics 35 (4), 279-282 (1992)
   PUBMED   1347284
REFERENCE   10 (bases 1 to 1834)
  AUTHORS   McMichael,A.J., Pilch,J.R., Galfre,G., Mason,D.Y., Fabre,J.W. and
            Milstein,C.
  TITLE     A human thymocyte antigen defined by a hybrid myeloma monoclonal
            antibody
  JOURNAL   Eur J Immunol 9 (3), 205-210 (1979)
   PUBMED   376318
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC132346.3.
            
            On Apr 6, 2020 this sequence version replaced NM_007639.3.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1).
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219381.34013.1, AK002582.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849382, SAMN00849386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-138               AC132346.3         134451-134588       c
            139-411             AC132346.3         133892-134164       c
            412-690             AC132346.3         133331-133609       c
            691-969             AC132346.3         132597-132875       c
            970-1066            AC132346.3         131949-132045       c
            1067-1834           AC132346.3         131093-131860       c
FEATURES             Location/Qualifiers
     source          1..1834
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 37.91 cM"
     gene            1..1834
                     /gene="Cd1d1"
                     /gene_synonym="CD1.1; Cd1a; Cd1d; Ly-38"
                     /note="CD1d1 antigen"
                     /db_xref="GeneID:12479"
                     /db_xref="MGI:MGI:107674"
     exon            1..138
                     /gene="Cd1d1"
                     /gene_synonym="CD1.1; Cd1a; Cd1d; Ly-38"
                     /inference="alignment:Splign:2.1.0"
     exon            139..411
                     /gene="Cd1d1"
                     /gene_synonym="CD1.1; Cd1a; Cd1d; Ly-38"
                     /inference="alignment:Splign:2.1.0"
     exon            412..690
                     /gene="Cd1d1"
                     /gene_synonym="CD1.1; Cd1a; Cd1d; Ly-38"
                     /inference="alignment:Splign:2.1.0"
     exon            691..969
                     /gene="Cd1d1"
                     /gene_synonym="CD1.1; Cd1a; Cd1d; Ly-38"
                     /inference="alignment:Splign:2.1.0"
     exon            970..1066
                     /gene="Cd1d1"
                     /gene_synonym="CD1.1; Cd1a; Cd1d; Ly-38"
                     /inference="alignment:Splign:2.1.0"
     exon            1067..1834
                     /gene="Cd1d1"
                     /gene_synonym="CD1.1; Cd1a; Cd1d; Ly-38"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1810..1815
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cd1d1"
                     /gene_synonym="CD1.1; Cd1a; Cd1d; Ly-38"
                     /note="hexamer: AATAAA"
     polyA_site      1834
                     /gene="Cd1d1"
                     /gene_synonym="CD1.1; Cd1a; Cd1d; Ly-38"
                     /note="major polyA site"
ORIGIN      
        1 agagcctttg tgtaccagtc cgggagcaga gtaaagcgca gaagtcggag ccgagggctg
       61 tgtagaactc tggcgctatg cggtacctac catggctgtt gctgtgggca ttcctacagg
      121 tctggggaca atctgaagcc cagcaaaaga attacacctt ccgctgcctg cagatgtctt
      181 cctttgcaaa cagaagctgg tcccgcacag acagcgtggt ctggctgggg gatctgcaga
      241 ctcaccgttg gagtaatgac tcagccacca tcagcttcac gaagccatgg tcccagggca
      301 agttgagtaa ccagcagtgg gagaagttgc agcatatgtt tcaagtctat cgagtcagct
      361 ttaccaggga catacaggaa ttagtcaaaa tgatgtcacc taaagaagac tatcccattg
      421 agatccagct gtctgcgggc tgtgaaatgt accctgggaa tgcttcggaa agctttttac
      481 acgtagcatt tcaaggaaaa tatgtcgtga gattctgggg aacgtcctgg cagacagtcc
      541 caggggcccc atcttggtta gacttgccca tcaaagtgct caacgctgat caagggacaa
      601 gtgcaaccgt gcagatgctc ctgaatgaca cctgccccct atttgtccgt ggtctcctag
      661 aggcagggaa gtcagaccta gagaagcaag agaagccagt ggcctggttg tccagtgtcc
      721 ccagctctgc acatggccat aggcagctgg tgtgtcatgt ctctggcttc tacccaaaac
      781 ctgtgtgggt gatgtggatg cggggtgacc aggagcaaca gggtactcac agaggtgatt
      841 tcctgccaaa tgctgatgag acatggtatc ttcaagcaac cctggatgtg gaggctggag
      901 aggaagctgg cctggcctgc agggtgaagc acagcagcct aggaggacag gatatcatcc
      961 tctactggga tgccaggcaa gcacccgtgg gcctgatcgt cttcatagta ctgatcatgc
     1021 tagtggtggt gggtgctgta gtctactata tctggagaag gagaagcgct tatcaagaca
     1081 tccggtgact cttccttaca cctgcctctc ctgaaattca gactttccag gctctaggac
     1141 ttcagtcctg gtctgctcag gatctgggga tgaaggagag gaatcctgaa gaagtgaaga
     1201 gcagccagta cgctcttttc aacattaatt ataagaaatt aattatttga gttgtttcgt
     1261 cagtttccat agtttagaac aaacacaact gcaaatgtgc gtacctgcca gaaacaagct
     1321 gttggcagtg ttttatggga tttgcactga actagaaagc atacttcctg cccaaacaga
     1381 cgctctgagg ttagttggca agtgtaaagt ccaacaccaa cctggctgta ctctgtattt
     1441 ttcaaggtga ctagaaaaat ggatttgtgt gtgtgtgaca tacagctttg gggtttgttg
     1501 gcaagtgtaa aatccaacac caacagtatt tttcaagtta actagaaaaa tggcttgtgt
     1561 gtgatgccgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtcacaca cacagatttt
     1621 aaaaagtgaa tgcaaatatc tgcaaatgtt tgctacctta gatacaaacc tgccaattaa
     1681 tgataactcc aagggcctcc aatttgtggc tcttttaata atgtttgttc taaatgccat
     1741 aatgaccatc ttaggacaca gtctctatgg aaattttgca ttaatgactg aaaggtgttt
     1801 tttctttaaa ataaaatagg atgtaaaatg aaaa
//
