LOCUS       NM_027152                986 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus CD164 sialomucin-like 2 (Cd164l2), mRNA.
ACCESSION   NM_027152 XM_900160 XM_974783
VERSION     NM_027152.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Kolla,L., Kelly,M.C., Mann,Z.F., Anaya-Rocha,A., Ellis,K.,
            Lemons,A., Palermo,A.T., So,K.S., Mays,J.C., Orvis,J., Burns,J.C.,
            Hertzano,R., Driver,E.C. and Kelley,M.W.
  TITLE     Characterization of the development of the mouse cochlear
            epithelium at the single cell level
  JOURNAL   Nat Commun 11 (1), 2389 (2020)
   PUBMED   32404924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 986)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
REFERENCE   3  (bases 1 to 986)
  AUTHORS   Endo,Y., Liu,Y., Kanno,K., Takahashi,M., Matsushita,M. and
            Fujita,T.
  TITLE     Identification of the mouse H-ficolin gene as a pseudogene and
            orthology between mouse ficolins A/B and human L-/M-ficolins
  JOURNAL   Genomics 84 (4), 737-744 (2004)
   PUBMED   15475251
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ072306.1, AK009888.1, AK158529.1 and AV057800.1.
            
            On or before Oct 5, 2006 this sequence version replaced
            XM_900160.2, XM_974783.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK139809.1, AK009888.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                CJ072306.1         4-79
            77-79               AK009888.1         2-4
            80-913              AK009888.1         6-839
            914-978             AK158529.1         1068-1132
            979-986             AV057800.1         236-243
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 66.24 cM"
     gene            1..986
                     /gene="Cd164l2"
                     /gene_synonym="2310047N01Rik"
                     /note="CD164 sialomucin-like 2"
                     /db_xref="GeneID:69655"
                     /db_xref="MGI:MGI:1916905"
     exon            1..259
                     /gene="Cd164l2"
                     /gene_synonym="2310047N01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            260..421
                     /gene="Cd164l2"
                     /gene_synonym="2310047N01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            422..493
                     /gene="Cd164l2"
                     /gene_synonym="2310047N01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            494..538
                     /gene="Cd164l2"
                     /gene_synonym="2310047N01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            539..683
                     /gene="Cd164l2"
                     /gene_synonym="2310047N01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            684..986
                     /gene="Cd164l2"
                     /gene_synonym="2310047N01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      961..966
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cd164l2"
                     /gene_synonym="2310047N01Rik"
                     /note="putative"
     polyA_site      978
                     /gene="Cd164l2"
                     /gene_synonym="2310047N01Rik"
                     /note="putative"
ORIGIN      
        1 ctggaccctc ccagaggtct cggcctctag ccacgcccac aaggcaacca cgctccagcc
       61 tggccacgcc cccgctgccc aggtttggct ctggctagcc gggcgagtgt agtcaagaaa
      121 ggacgcgcca caccagctgt ccgccgaccc ccagtcccgg cccccgcgct catggccgca
      181 cccggacccc gcgccttgcg tgctgctctc tgcggcggtt gttgttgcct tctcctgtgt
      241 gcccagctgg ttctagctgg taaaggagct cgtggctttg gtcggggagc cctgctccgc
      301 ctgaacgttt ggcctactac ccaagggggc tgcaaacacc tgggacactg tgaacactgt
      361 gtggacagag cccacaactt ctccatttgt gtctggcagc aatgtgggcc agaggagcca
      421 ggacactgtg tggcccaagc tgaagtggtc aaggagggtt gctcaatcta taaccactca
      481 gagtcatgcc cagcttccca tcatcattcc acagaggaac cgaagccaag taccacaggg
      541 agtcccccca tccctgaaga ccacagccca ggttttgatg gagctagctt cattgggggc
      601 atcgtgctgg tactgagcct gcaagcaaca gctttctttg tgcttcgctt cctcaaggcc
      661 aaggacagca cttaccagac actaatctga ccccagtgtt cctggctcca ccttgaaggg
      721 acagaggacc tcttggttgc tttatgggca ctgggggtgg gacaaatgtt ggccaccagt
      781 ttctggtccc tgtaggcaca agggcaccac gcaggcttag tgctgatggc tgacatttcc
      841 tgtcctgggt ctggtacctg cagctgagag caccctccag ccacctcgtg tctcatccag
      901 cctgctgggc cccctgagct gctgcctctg cccaccaatc cactctgggg tctcccctca
      961 aataaaggac ctgtttccac cccatg
//
