LOCUS       NM_016898               2830 bp    mRNA    linear   ROD 11-SEP-2024
DEFINITION  Mus musculus CD164 antigen (Cd164), mRNA.
ACCESSION   NM_016898
VERSION     NM_016898.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2830)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2830)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   3  (bases 1 to 2830)
  AUTHORS   Lumayag,S., Haldin,C.E., Corbett,N.J., Wahlin,K.J., Cowan,C.,
            Turturro,S., Larsen,P.E., Kovacs,B., Witmer,P.D., Valle,D.,
            Zack,D.J., Nicholson,D.A. and Xu,S.
  TITLE     Inactivation of the microRNA-183/96/182 cluster results in
            syndromic retinal degeneration
  JOURNAL   Proc Natl Acad Sci U S A 110 (6), E507-E516 (2013)
   PUBMED   23341629
REFERENCE   4  (bases 1 to 2830)
  AUTHORS   Oeschger,F.M., Wang,W.Z., Lee,S., Garcia-Moreno,F., Goffinet,A.M.,
            Arbones,M.L., Rakic,S. and Molnar,Z.
  TITLE     Gene expression analysis of the embryonic subplate
  JOURNAL   Cereb Cortex 22 (6), 1343-1359 (2012)
   PUBMED   21862448
REFERENCE   5  (bases 1 to 2830)
  AUTHORS   Bae,G.U., Gaio,U., Yang,Y.J., Lee,H.J., Kang,J.S. and Krauss,R.S.
  TITLE     Regulation of myoblast motility and fusion by the CXCR4-associated
            sialomucin, CD164
  JOURNAL   J Biol Chem 283 (13), 8301-8309 (2008)
   PUBMED   18227060
  REMARK    GeneRIF: CD164 is a regulator of myoblast motility
REFERENCE   6  (bases 1 to 2830)
  AUTHORS   Fujimoto,M., Matsumoto,K., Iguchi-Ariga,S.M. and Ariga,H.
  TITLE     Disruption of MSSP, c-myc single-strand binding protein, leads to
            embryonic lethality in some homozygous mice
  JOURNAL   Genes Cells 6 (12), 1067-1075 (2001)
   PUBMED   11737267
  REMARK    GeneRIF: the deletion of the mssp gene results in both the growth
            defect in the embryo and the hormonal defect in adult female mouse.
REFERENCE   7  (bases 1 to 2830)
  AUTHORS   Chalhoub,N., Benachenhou,N. and Vacher,J.
  TITLE     Physical and transcriptional map of the mouse Chromosome 10
            proximal region syntenic to human 6q16-q21
  JOURNAL   Mamm Genome 12 (12), 887-892 (2001)
   PUBMED   11707774
REFERENCE   8  (bases 1 to 2830)
  AUTHORS   Chan,J.Y., Lee-Prudhoe,J.E., Jorgensen,B., Ihrke,G., Doyonnas,R.,
            Zannettino,A.C., Buckle,V.J., Ward,C.J., Simmons,P.J. and Watt,S.M.
  TITLE     Relationship between novel isoforms, functionally important
            domains, and subcellular distribution of CD164/endolyn
  JOURNAL   J Biol Chem 276 (3), 2139-2152 (2001)
   PUBMED   11027692
REFERENCE   9  (bases 1 to 2830)
  AUTHORS   Ihrke,G., Gray,S.R. and Luzio,J.P.
  TITLE     Endolyn is a mucin-like type I membrane protein targeted to
            lysosomes by its cytoplasmic tail
  JOURNAL   Biochem J 345 Pt 2 (Pt 2), 287-296 (2000)
   PUBMED   10620506
REFERENCE   10 (bases 1 to 2830)
  AUTHORS   Kurosawa,N., Kanemitsu,Y., Matsui,T., Shimada,K., Ishihama,H. and
            Muramatsu,T.
  TITLE     Genomic analysis of a murine cell-surface sialomucin, MGC-24/CD164
  JOURNAL   Eur J Biochem 265 (1), 466-472 (1999)
   PUBMED   10491205
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC132290.3.
            
            On Nov 17, 2006 this sequence version replaced NM_016898.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB028895.1, BC005414.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-201               AC132290.3         67858-68058
            202-291             AC132290.3         70276-70365
            292-363             AC132290.3         71531-71602
            364-402             AC132290.3         72465-72503
            403-459             AC132290.3         75185-75241
            460-2830            AC132290.3         77030-79400
FEATURES             Location/Qualifiers
     source          1..2830
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 22.46 cM"
     gene            1..2830
                     /gene="Cd164"
                     /gene_synonym="A115; A24; MGC-24; MSSP"
                     /note="CD164 antigen"
                     /db_xref="GeneID:53599"
                     /db_xref="MGI:MGI:1859568"
     exon            1..201
                     /gene="Cd164"
                     /gene_synonym="A115; A24; MGC-24; MSSP"
                     /inference="alignment:Splign:2.1.0"
     CDS             36..629
                     /gene="Cd164"
                     /gene_synonym="A115; A24; MGC-24; MSSP"
                     /note="c-Myc binding protein; sialomucin core protein 24;
                     MUC-24; MGC-24v; endolyn; multi-glycosylated core protein
                     24"
                     /codon_start=1
                     /product="sialomucin core protein 24 precursor"
                     /protein_id="NP_058594.1"
                     /db_xref="CCDS:CCDS23806.1"
                     /db_xref="GeneID:53599"
                     /db_xref="MGI:MGI:1859568"
                     /translation="MSGSSRRLLWAATCLAVLCVSAAQPNITTLAPNVTEVPTTTTKV
                     VPTTQMPTVLPETCASFNSCVSCVNATFTNNITCFWLHCQEANKTYCANEPLSNCSQV
                     NRTDLCSVIPPTTPVPTNSTAKPTTRPSSPTPTPSVVTSAGTTNTTLTPTSQPERKST
                     FDAASFIGGIVLVLGVQAVIFFLYKFCKSKERNYHTL"
     exon            202..291
                     /gene="Cd164"
                     /gene_synonym="A115; A24; MGC-24; MSSP"
                     /inference="alignment:Splign:2.1.0"
     exon            292..363
                     /gene="Cd164"
                     /gene_synonym="A115; A24; MGC-24; MSSP"
                     /inference="alignment:Splign:2.1.0"
     exon            364..402
                     /gene="Cd164"
                     /gene_synonym="A115; A24; MGC-24; MSSP"
                     /inference="alignment:Splign:2.1.0"
     exon            403..459
                     /gene="Cd164"
                     /gene_synonym="A115; A24; MGC-24; MSSP"
                     /inference="alignment:Splign:2.1.0"
     exon            460..2830
                     /gene="Cd164"
                     /gene_synonym="A115; A24; MGC-24; MSSP"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2807..2812
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cd164"
                     /gene_synonym="A115; A24; MGC-24; MSSP"
                     /note="hexamer: AATAAA"
     polyA_site      2830
                     /gene="Cd164"
                     /gene_synonym="A115; A24; MGC-24; MSSP"
                     /note="major polyA site"
ORIGIN      
        1 cagcttttct cccggacgcc tgggctgaag acacaatgtc gggctcctcc cgccgactgc
       61 tctgggccgc cacctgcctc gccgtgctct gcgtctcggc cgcgcagccc aacatcacca
      121 ccctggctcc caacgtgacc gaggtgccga ccacgaccac caaagtggtc ccgacgacgc
      181 aaatgcccac cgtgctacca gaaacctgtg cgagcttcaa cagctgtgtt tcctgtgtta
      241 atgccacctt tactaataat attacctgct tttggttaca ttgccaagaa gcaaataaga
      301 cctattgtgc aaatgaacca ttaagtaatt gttcccaggt gaaccgcact gacttgtgtt
      361 ctgtaatacc tcctaccact ccagtgccaa ccaattctac agctaagccc acaactcggc
      421 cttcctctcc tacacctact ccctcagttg tcacatcagc agggacaaca aataccacac
      481 tgactccaac ctcccagcct gagcggaagt cgacctttga tgcagccagc ttcattggag
      541 ggatcgtcct tgtcttgggt gtgcaggctg taattttctt tctctataag ttctgcaaat
      601 ctaaagaacg aaattaccat actctgtaaa cagacctgtt aaattaatgt ggactggcag
      661 ttaacttgtg caactcactg aaaccaaaat attgaagaag tcccacatgg aagacgctgt
      721 tccaggatct ttacctttcc aaaggatgca tacaggatat tttggagcat catcctcgaa
      781 gaaaagtcag ttaaaccatt tagttcatca ggaatattta aaatattctg catgaatccg
      841 tgtggctgtc gtctttgttt accatggctg ctgctgtggg actgtttttt cctctgacat
      901 gccaaatgta acttctgtaa gtggtggaga gtgctgtcct gtgtaggcag cttctgactg
      961 cagttgaaat gtagtcccct agaatcctaa aggctgttat tctcatccta gttccaggtg
     1021 taacttggtg gccagaattg agaagagtgc caaatgacca cccgtcaggc agattgaggg
     1081 ccatcacttc aaacatagat taaatttgtt tagcactaaa ctatccctag agtaaatttt
     1141 tatgcttgac aagttgtatt ttatatatta gaaataagat gccacacagg gcaatccaga
     1201 tttagattaa agaaaggata cacagacatt aatctgcaac aggtcttgtt catactcata
     1261 aagtgtaccg tattaagaaa tcagaacagt gccttaagac agactgagac gtcgtgaaaa
     1321 atgtgttcac actgtgggag gcaaagcttg gtctgagaat gtaactgttg atgtgagcag
     1381 cagaaatctg cttatagata acatactgtt aatatttaat taaaagcatt gttttttcta
     1441 gagctgagaa atagaagcta aagaataatt agagctgaaa ggcttcctta tatcaaacca
     1501 tctaacattt ttcttagggc tgttaaacta gacataaaat tgatttatct ttctctctgt
     1561 acacaaagta tccaaatatt ataccttaag gattcctacc aggttttctt gaaaagtggc
     1621 ttttacatga ggcaagaagg aagtagttgt agatagaatc attttctagt tctttaaatg
     1681 agacaatcac tttgttttct aatagatgtg acctgtgtaa cttaaaaaat ctgagggttt
     1741 gagagaggtt gctctagatt tccaatgacg ataccctggc tgaataggct tttctcttcc
     1801 ttgggccttt acttcttttc ttcctccttg gtttcagttc ccatgtgcta tcattataat
     1861 catgcagact tttacttcag ttgcttctga aagcactaag ttttcagttt tggagttact
     1921 tctcccttgc ctctgacaca ctgcacacgt ctagaggctg taattggaaa taggcttttg
     1981 gtttcctgtg ccattcaagt ttggggcttt catttggtta cagagttcag cgcttggttc
     2041 ccagggttta tatacgaaac agcggattgc tgtgggctgg ttcataaagt gaaactaatg
     2101 aatctatctc tttgtcactt gctggtacag ctagtttgtt tcacttgcac atttgtacat
     2161 atatctaatg ttttcaagtg ccttacttgt ttaaactctg acttcaaagg tttttgggga
     2221 aagataggtt tacctcacag ttatgtttcc attgtaattt ctaggttcct cacaaaaatc
     2281 tatttcagtg ctgtagctgt tagttttaag tgagtgctaa agttctttta aaagtacaca
     2341 gaatttccat tccttataaa ggtggcaaaa ttggtttgtc atttacctcc atgtgactcc
     2401 ttgccccata taaatgtcag catatgtagc aagttttcta agaatgtaac ttaatttgaa
     2461 gctcctgaaa ttttgagcac tgctctaaca ttgtaggaag ttagtgacat tttgcaagtc
     2521 tctacaaaag ctcttgccac agaattcact gctgccctga ctcttcacca tctttcttta
     2581 gcaaggtatt ttgagccatt aatgattttg ggttttttaa tccagaaggt atataaaagc
     2641 cttttcagag ttttcatctg atttgtcctg aggatctagt tctatcaaat accttatttt
     2701 acctttgcca tacttgctgc acaagcagac actgctggac ttagaagttt ctatttgagt
     2761 tccttaaact acaaaactaa tatgtatgtg taccaaactg atttaaaata aatgtttatt
     2821 agtctcttga
//
