LOCUS       XM_006506800            4424 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus CD163 antigen (Cd163), transcript variant
            X1, mRNA.
ACCESSION   XM_006506800
VERSION     XM_006506800.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000072.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006506800.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4424
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="6"
     gene            1..4424
                     /gene="Cd163"
                     /gene_synonym="CD163v2; CD163v3"
                     /note="CD163 antigen; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 16 ESTs, 13 long SRA
                     reads, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:93671"
                     /db_xref="MGI:MGI:2135946"
     CDS             104..3499
                     /gene="Cd163"
                     /gene_synonym="CD163v2; CD163v3"
                     /codon_start=1
                     /product="scavenger receptor cysteine-rich type 1 protein
                     M130 isoform X1"
                     /protein_id="XP_006506863.1"
                     /db_xref="GeneID:93671"
                     /db_xref="MGI:MGI:2135946"
                     /translation="MGGHRMVLLGGAGSPGEMKKELRLAGGENNCSGRVELKIHDKWG
                     TVCSNGWSMNEVSVVCQQLGCPTSIKALGWANSSAGSGYIWMDKVSCTGNESALWDCK
                     HDGWGKHNCTHEKDAGVTCSDGSNLEMRLVNSAGHRCLGRVEIKFQGKWGTVCDDNFS
                     KDHASVICKQLGCGSAISFSGSAKLGAGSGPIWLDDLACNGNESALWDCKHRGWGKHN
                     CDHAEDVGVICLEGADLSLRLVDGVSRCSGRLEVRFQGEWGTVCDDNWDLRDASVVCK
                     QLGCPTAISAIGRVNASEGSGQIWLDNISCEGHEATLWECKHQEWGKHYCHHREDAGV
                     TCSDGADLELRLVGGGSRCAGIVEVEIQKLTGKMCSRGWTLADADVVCRQLGCGSALQ
                     TQAKIYSKTGATNTWLFPGSCNGNETTFWQCKNWQWGGLSCDNFEEAKVTCSGHREPR
                     LVGGEIPCSGRVEVKHGDVWGSVCDFDLSLEAASVVCRELQCGTVVSILGGAHFGEGS
                     GQIWGEEFQCSGDESHLSLCSVAPPLDRTCTHSRDVSVVCSRYIDIRLAGGESSCEGR
                     VELKTLGAWGPLCSSHWDMEDAHVLCQQLKCGVAQSIPEGAHFGKGAGQVWSHMFHCT
                     GTEEHIGDCLMTALGAPTCSEGQVASVICSGNQSQTLLPCSSLSPVQTTSSTIPKESE
                     VPCIASGQLRLVGGGGRCAGRVEVYHEGSWGTVCDDNWDMTDANVVCKQLDCGVAINA
                     TGSAYFGEGAGAIWLDEVICTGKESHIWQCHSHGWGRHNCRHKEDAGVICSEFMSLRL
                     TNEAHKENCTGRLEVFYNGTWGSIGSSNMSPTTVGVVCRQLGCADNGTVKPIPSDKTP
                     SRPMWVDRVQCPKGVDTLWQCPSSPWKQRQASPSSQESWIICDNKIRLQEGHTDCSGR
                     VEIWHKGSWGTVCDDSWDLNDAKVVCKQLGCGQAVKALKEAAFGPGTGPIWLNEIKCR
                     GNESSLWDCPAKPWSHSDCGHKEDASIQCLPKMTSESHHGTGHPTLTALLVCGAILLV
                     LLIVFLLWTLKRRQIQRLTVSSRGEVLIHQVQYQEMDSKADDLDLLKSSENSNNSYDF
                     NDDGLTSLSKYLPISGIKKGSFRGTLRRKMIIYNPLRLEFKKP"
ORIGIN      
        1 gagatgattc tctccctccg tggtcatcca ctttctacag agaacacgtc tatgaaatag
       61 tatcaggaga cacacggagc catcaaaatc atcaagcttt ggaatgggtg gacacagaat
      121 ggttcttctt ggaggtgctg gatctcctgg agaaatgaag aaggaactga gactggcggg
      181 tggtgaaaac aactgtagtg ggagagtgga acttaagatc catgacaagt ggggcacagt
      241 gtgcagtaac ggctggagca tgaatgaagt gtccgtggtt tgccagcagc tgggatgccc
      301 aacttctatt aaagcccttg gatgggctaa ctccagcgcc ggctctggat atatctggat
      361 ggacaaagtt tcttgtacag ggaatgagtc agctctttgg gactgcaaac atgatgggtg
      421 gggaaagcat aactgtaccc atgaaaaaga tgctggagtg acctgctcag atggatctaa
      481 tttggagatg agactggtga acagtgcggg ccaccgatgc ttaggaagag tagaaataaa
      541 gttccaggga aagtggggga cggtgtgtga cgacaacttc agcaaagatc acgcttctgt
      601 gatttgtaaa cagcttggat gtggaagtgc cattagtttc tctggctcag ctaaattggg
      661 agctggttct ggaccaatct ggctcgatga cctggcatgc aatggaaatg agtcagctct
      721 ctgggactgc aaacaccggg gatggggcaa gcataactgt gaccatgctg aggatgtcgg
      781 tgtgatttgc ttagagggag cagatctgag cctgagacta gtggatggag tgtccagatg
      841 ttcaggaaga ttggaagtga gattccaagg agaatggggg accgtgtgtg atgataactg
      901 ggatctccgg gatgcttctg tggtgtgcaa gcaactggga tgtccaactg ccatcagtgc
      961 cattggtcga gttaatgcca gtgagggatc tggacagatt tggcttgaca acatttcatg
     1021 cgaaggacat gaggcaactc tttgggagtg taaacaccaa gagtggggaa agcattactg
     1081 tcatcataga gaagacgctg gtgtgacatg ttctgatgga gcagatctgg aacttagact
     1141 tgtaggtgga ggcagtcgct gtgctggcat tgtggaggtg gagattcaga agctgactgg
     1201 gaagatgtgt agccgaggct ggacactggc agatgcggat gtggtttgca gacagcttgg
     1261 atgtggatct gcgcttcaaa cccaggctaa gatctactct aaaactgggg caacaaatac
     1321 gtggctcttt cctggatctt gtaatggaaa tgaaactact ttttggcaat gcaaaaactg
     1381 gcagtggggc ggcctttcct gtgataattt cgaagaagcc aaagttacct gctcaggcca
     1441 cagggaaccc agactggttg gaggagaaat cccatgctct ggtcgtgtgg aagtgaaaca
     1501 cggagacgtg tggggctccg tctgtgattt tgacttgtct ctggaagctg ccagtgtggt
     1561 gtgcagggaa ttacaatgtg gaacagtcgt ctctatccta gggggagcac attttggaga
     1621 aggaagtgga cagatctggg gtgaagaatt ccagtgtagt ggggatgagt cccatctttc
     1681 actatgctca gtggcgcccc cgctagacag aacttgtacc cacagcaggg atgtcagcgt
     1741 agtctgctca cgatacatag atattcgtct ggcaggcggc gagtcctcct gtgagggaag
     1801 agtggagctc aagacactcg gagcctgggg tcccctctgc agttctcatt gggacatgga
     1861 agatgctcat gtcttatgtc agcagctgaa gtgtggggtt gcccaatcta ttccagaagg
     1921 agcacatttt gggaaaggag ctggtcaggt ctggagtcac atgttccact gcactggaac
     1981 tgaggaacat ataggagatt gcctcatgac tgctctgggt gcgccgacgt gttccgaagg
     2041 acaggtggcc tctgtcatct gctcaggaaa ccaatcccag acactattgc catgtagttc
     2101 attgtctcca gtccaaacaa caagctctac aattccaaag gagagtgaag ttccctgcat
     2161 agcaagtggc cagcttcgct tggtaggtgg aggtggtcgc tgcgctggaa gagtggaggt
     2221 ctaccacgag ggctcttggg gcaccgtctg tgatgacaat tgggatatga ctgatgccaa
     2281 tgtggtgtgc aagcagctgg actgtggcgt ggcaattaac gccactggct ctgcttactt
     2341 cggggaagga gcaggagcta tctggctaga cgaagtcatc tgcactggga aagagtctca
     2401 tatttggcag tgccattcac atggctgggg acgccataac tgcaggcaca aagaagatgc
     2461 aggtgttatc tgctccgagt tcatgtctct gaggctgacc aacgaagccc acaaagaaaa
     2521 ctgcacaggt cgccttgaag tgttttacaa tggtacatgg ggcagtattg gcagtagcaa
     2581 tatgtctcca accactgtgg gggtggtgtg ccgtcagctg ggctgtgcag acaacgggac
     2641 tgtgaaaccc ataccttcag acaagacacc atccaggccc atgtgggtag atcgtgtgca
     2701 gtgtccaaaa ggagttgaca ctttgtggca gtgcccctcg tcaccttgga aacagagaca
     2761 ggccagcccc tcctcccagg agtcctggat catctgtgac aacaaaataa gactccagga
     2821 agggcataca gactgttctg gacgtgtgga gatctggcac aaaggttcct ggggaacagt
     2881 gtgtgatgac tcctgggatc ttaatgatgc taaggttgta tgtaagcagt tgggctgtgg
     2941 ccaagctgtg aaggcactaa aagaagcagc atttggtcca ggaactgggc ccatatggct
     3001 caatgaaatt aagtgtagag ggaatgagtc ttccctgtgg gattgtcctg ccaaaccgtg
     3061 gagtcacagc gactgtgggc acaaagaaga tgcttccatc cagtgcctcc caaaaatgac
     3121 ttcagaatca catcatggca caggtcaccc caccctcacg gcactcttgg tttgtggagc
     3181 cattctattg gtcctcctca ttgtcttcct cctgtggact ctgaagcgac gacagattca
     3241 gcgacttaca gtttcctcaa gaggagaggt cttgatacat caagttcagt accaagagat
     3301 ggattcaaag gcggatgatc tggacttgct gaaatcctcg gaaaattcca acaattcata
     3361 tgattttaat gatgatggac tgacatcttt gtctaaatat cttcctattt ctggaattaa
     3421 aaaggggtca ttcagaggca cactgagaag gaaaatgata atttataatc cactgaggtt
     3481 ggagtttaag aagccttgac aggacagcca gctaaatgga acaagagccc aggcaacgca
     3541 cggatgacca cagctgcatc ttcatgcagt cctttgtttc ctggaactct gctgaacctg
     3601 caaaaaccat atttgtgaat gtgaccactt aatagagatg ggagactttt gagggaatta
     3661 aacaatattg ctattggttt gcttgttcgc aatagggtct cattatgtat agccctggag
     3721 atggcgatag agagcaggca agcctagaat tcacagagat ctgcttgtct ctgcttccca
     3781 aatgctggga tcaaatatgt ggaccaccac atgtggttta acaattgtgt cttgatttta
     3841 taaatttctg gttggttttt ctgacgtttt tagggtttcg tgaatataaa ataatgtctt
     3901 ttcggttggc atgctaattt ttaaatatta tacacttcct tgtagtgagt ttaagaataa
     3961 tttcttataa ccaagtcaat tcattttcac tttgaattat ttaataaagg aatatggtca
     4021 ttgtgaccac acacacagca gttgtgacca cctgtatgag gccttcaaaa aatattttaa
     4081 aaatagaggg ctggagaaat ggctcagaga tcctgagttc aattcctagc aaccacatgg
     4141 tggctcacaa ccatctgtaa tgggaatccg atgccctctt ccagtgtatc tgaagatagt
     4201 gacactgtcc tcattaacat aaaataaata aataaatctt taaaaaaaga aaagacaata
     4261 gaggagggga ggggcgtgag agtaggagtg aggactgatt gagaagaagg ttggaggaag
     4321 tggggggagg tgaaaagcta gttgggaact tatgtgatca cagtgcatca tgtccaaata
     4381 tgacatgtcc aaaaatgtta ttaataaaga aacggaaaac aagc
//
