LOCUS       NM_007718               2158 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus C-C motif chemokine receptor 1 like 1 (Ccr1l1), mRNA.
ACCESSION   NM_007718
VERSION     NM_007718.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2158)
  AUTHORS   Kline,J.M., Heusinkveld,L.E., Taranto,E., Martin,C.B., Tomasi,A.G.,
            Hsu,I.J., Cho,K., Khillan,J.S., Murphy,P.M. and Pontejo,S.M.
  TITLE     Structural and functional analysis of Ccr1l1, a Rodentia-restricted
            eosinophil-selective chemokine receptor homologue
  JOURNAL   J Biol Chem 296, 100373 (2021)
   PUBMED   33548230
  REMARK    GeneRIF: Structural and functional analysis of Ccr1l1, a
            Rodentia-restricted eosinophil-selective chemokine receptor
            homologue.
REFERENCE   2  (bases 1 to 2158)
  AUTHORS   Kiss,H., Darai,E., Kiss,C., Kost-Alimova,M., Klein,G.,
            Dumanski,J.P. and Imreh,S.
  TITLE     Comparative human/murine sequence analysis of the common eliminated
            region 1 from human 3p21.3
  JOURNAL   Mamm Genome 13 (11), 646-655 (2002)
   PUBMED   12461651
REFERENCE   3  (bases 1 to 2158)
  AUTHORS   McGrath,K.E., Koniski,A.D., Maltby,K.M., McGann,J.K. and Palis,J.
  TITLE     Embryonic expression and function of the chemokine SDF-1 and its
            receptor, CXCR4
  JOURNAL   Dev Biol 213 (2), 442-456 (1999)
   PUBMED   10479460
REFERENCE   4  (bases 1 to 2158)
  AUTHORS   Nibbs,R.J., Wylie,S.M., Pragnell,I.B. and Graham,G.J.
  TITLE     Cloning and characterization of a novel murine beta chemokine
            receptor, D6. Comparison to three other related macrophage
            inflammatory protein-1alpha receptors, CCR-1, CCR-3, and CCR-5
  JOURNAL   J Biol Chem 272 (19), 12495-12504 (1997)
   PUBMED   9139699
REFERENCE   5  (bases 1 to 2158)
  AUTHORS   Kozak,C.A., Gao,J.L. and Murphy,P.M.
  TITLE     Mapping of the mouse macrophage inflammatory protein-1 alpha
            receptor gene Scya3r and two related mouse beta chemokine
            receptor-like genes to chromosome 9
  JOURNAL   Genomics 29 (1), 294-296 (1995)
   PUBMED   8530091
REFERENCE   6  (bases 1 to 2158)
  AUTHORS   Gao,J.L. and Murphy,P.M.
  TITLE     Cloning and differential tissue-specific expression of three mouse
            beta chemokine receptor-like genes, including the gene for a
            functional macrophage inflammatory protein-1 alpha receptor
  JOURNAL   J Biol Chem 270 (29), 17494-17501 (1995)
   PUBMED   7542241
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC140491.4.
            
            On Jun 17, 2019 this sequence version replaced NM_007718.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN01164133,
                              SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-112               AC140491.4         63494-63605         c
            113-2158            AC140491.4         53320-55365         c
FEATURES             Location/Qualifiers
     source          1..2158
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 75.05 cM"
     gene            1..2158
                     /gene="Ccr1l1"
                     /gene_synonym="Cmkbr1l1"
                     /note="C-C motif chemokine receptor 1 like 1"
                     /db_xref="GeneID:12770"
                     /db_xref="MGI:MGI:104617"
     exon            1..112
                     /gene="Ccr1l1"
                     /gene_synonym="Cmkbr1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            113..2158
                     /gene="Ccr1l1"
                     /gene_synonym="Cmkbr1l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             180..1250
                     /gene="Ccr1l1"
                     /gene_synonym="Cmkbr1l1"
                     /note="chemokine (C-C) receptor 1-like 1; macrophage
                     inflammatory protein-1 alpha receptor-like 1; MIP-1
                     alphaRL1; chemokine (C-C motif) receptor 1-like 1"
                     /codon_start=1
                     /product="C-C chemokine receptor 1-like protein 1"
                     /protein_id="NP_031744.3"
                     /db_xref="CCDS:CCDS23667.1"
                     /db_xref="GeneID:12770"
                     /db_xref="MGI:MGI:104617"
                     /translation="MEIPAVTEPSYNTVAKNDFMSGFLCFSINVRAFGITVLTPLYSL
                     VFIIGVIGHVLVVLVLIQHKRLRNMTSIYLFNLAISDLVFLSTLPFWVDYIMKGDWIF
                     GNAMCKFVSGFYYLGLYSDMFFITLLTIDRYLAVVHVVFALRARTVTFGIISSIITWV
                     LAALVSIPCLYVFKSQMEFTYHTCRAILPRKSLIRFLRFQALTMNILGLILPLLAMII
                     CYTRIINVLHRRPNKKKAKVMRLIFVITLLFFLLLAPYYLAAFVSAFEDVLFTPSCLR
                     SQQVDLSLMITEALAYTHCCVNPVIYVFVGKRFRKYLWQLFRRHTAITLPQWLPFLSV
                     DRAQRASATPPSTVEIETSADL"
     regulatory      2139..2144
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccr1l1"
                     /gene_synonym="Cmkbr1l1"
                     /note="hexamer: AATAAA"
     polyA_site      2158
                     /gene="Ccr1l1"
                     /gene_synonym="Cmkbr1l1"
                     /note="major polyA site"
ORIGIN      
        1 atattgctca tgtctggagg acacacacac ttcagagacg tgacatactt gagataaagg
       61 gaagcagaca ccagctacag caggatccag gtatatcaca gataattttc agagccctac
      121 gtgtttaata gcaaagcaaa tataaaggtc attgtccctg tcctgtagaa gagtttacaa
      181 tggagattcc agctgtcaca gagccctcct acaacacagt tgccaagaat gacttcatgt
      241 ctggattctt atgcttcagc ataaatgtga gggcatttgg aatcacagtg ctgactcccc
      301 tgtactccct ggtgttcatc attggcgtga taggccatgt cttggtggtt ctggtgctca
      361 tacaacacaa gaggcttcga aacatgacca gcatctacct gttcaacctg gctatctctg
      421 atctggtctt cctctccaca ttacctttct gggttgacta tatcatgaaa ggagactgga
      481 tttttggtaa cgccatgtgt aagtttgtgt ctggatttta ttacctgggc ttgtatagtg
      541 acatgttttt catcaccctg cttacgattg atagatacct agctgttgtc catgtcgtgt
      601 ttgccctgag agcccggact gtcacttttg gcatcatcag tagcatcatt acctgggtcc
      661 tggctgcctt ggtttctatt ccttgtctct atgttttcaa atcccagatg gagttcactt
      721 accatacctg cagagcaatt ttgcccagga agagcctgat acgtttttta aggtttcagg
      781 ctctaacaat gaacatcctt gggctaattt tgcctctgtt ggccatgatt atctgctaca
      841 cacggatcat caatgtttta cacagaagac ccaataagaa gaaggccaaa gtcatgcgcc
      901 tgatttttgt tattacgctt ctcttcttcc tcctcttggc cccttattat ctggctgcct
      961 ttgtttctgc ttttgaagac gtcctattca cccctagttg tttgagaagc caacaggtgg
     1021 acctgtcctt gatgataact gaagcacttg cctacaccca ctgctgtgtc aacccagtca
     1081 tttatgtctt tgtgggtaaa cggttccgga agtacctctg gcagttgttt cggaggcata
     1141 cagctataac cctgccacaa tggctgccct tcctctcggt ggacagagca cagagggcca
     1201 gtgccacgcc tccatccaca gtggaaattg agacctctgc cgacttataa ttcagaccct
     1261 ggacgccaac aaaggcctag aagagtgaaa agacagtgtg cctctccaag acagatatgg
     1321 aggattcatt gtaaaacaga agaaacttac aggtagctta gatagaatgt ttgaggcgat
     1381 cttcttcctg tcagaaaggg gatgtatgac caaattgata cattccagag actgggacaa
     1441 taggttccag ggaagggctt agacccaaca agaagtaggg tttgtgcact ggcactccca
     1501 ctcccagtga ttgtggaacc agttgagtac acaattgagt actgaacttg gaattcaatg
     1561 gaattcacaa atgcctcctc tacctcttga aagccctgta actcaaggtc aaagtattta
     1621 agacatattg aggcactgct ttgtcatttg tagggaagga tattcacctt tcctgtttat
     1681 agtcttctcc ctaaaggatc aagcatctag gtatataata taattaatat aatataataa
     1741 tgtacactac atatattata tttatcatat tacattaacc tctatctcac cttactaatc
     1801 ctacaggttc tatgtatcta atctggagta ataacatgta actgatttgt gtttacttag
     1861 cagcagagtc aatatgtgtt gtgtgaaatt taatctggaa taattatatc atgctcgact
     1921 gtggaacttg gtttacctga tggtcacatt ttcagtggct gccatctgct taccttggga
     1981 gactttactg ggtttgataa ctccatttac tgattttata tcatgctggg aacttacaga
     2041 cttttgtttt ctagtgtatt atgcctcaca ataatttctc tccctgtgat acctatgtat
     2101 tcatttctat gttgaataga aagccttaat tgtggtgtaa taaatttcat caactttt
//
