LOCUS       NM_001359295            3183 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus cell cycle progression 1 (Ccpg1), transcript variant
            6, mRNA.
ACCESSION   NM_001359295 XM_006511467
VERSION     NM_001359295.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3183)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3183)
  AUTHORS   Nakagama,S., Maejima,Y., Fan,Q., Shiheido-Watanabe,Y., Tamura,N.,
            Ihara,K. and Sasano,T.
  TITLE     Endoplasmic Reticulum Selective Autophagy Alleviates
            Anthracycline-Induced Cardiotoxicity
  JOURNAL   JACC CardioOncol 5 (5), 656-670 (2023)
   PUBMED   37969644
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3183)
  AUTHORS   Smith,M.D., Harley,M.E., Kemp,A.J., Wills,J., Lee,M., Arends,M.,
            von Kriegsheim,A., Behrends,C. and Wilkinson,S.
  TITLE     CCPG1 Is a Non-canonical Autophagy Cargo Receptor Essential for
            ER-Phagy and Pancreatic ER Proteostasis
  JOURNAL   Dev Cell 44 (2), 217-232 (2018)
   PUBMED   29290589
REFERENCE   4  (bases 1 to 3183)
  AUTHORS   Kostenko,E.V., Olabisi,O.O., Sahay,S., Rodriguez,P.L. and
            Whitehead,I.P.
  TITLE     Ccpg1, a novel scaffold protein that regulates the activity of the
            Rho guanine nucleotide exchange factor Dbs
  JOURNAL   Mol Cell Biol 26 (23), 8964-8975 (2006)
   PUBMED   17000758
REFERENCE   5  (bases 1 to 3183)
  AUTHORS   Zhang,S.S., Xu,X., Liu,M.G., Zhao,H., Soares,M.B., Barnstable,C.J.
            and Fu,X.Y.
  TITLE     A biphasic pattern of gene expression during mouse retina
            development
  JOURNAL   BMC Dev Biol 6, 48 (2006)
   PUBMED   17044933
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 3183)
  AUTHORS   Sharov,A.A., Piao,Y., Matoba,R., Dudekula,D.B., Qian,Y.,
            VanBuren,V., Falco,G., Martin,P.R., Stagg,C.A., Bassey,U.C.,
            Wang,Y., Carter,M.G., Hamatani,T., Aiba,K., Akutsu,H., Sharova,L.,
            Tanaka,T.S., Kimber,W.L., Yoshikawa,T., Jaradat,S.A., Pantano,S.,
            Nagaraja,R., Boheler,K.R., Taub,D., Hodes,R.J., Longo,D.L.,
            Schlessinger,D., Keller,J., Klotz,E., Kelsoe,G., Umezawa,A.,
            Vescovi,A.L., Rossant,J., Kunath,T., Hogan,B.L., Curci,A.,
            D'Urso,M., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC158997.2 and BC043049.1.
            
            On Dec 30, 2017 this sequence version replaced XM_006511467.3.
            
            Transcript Variant: This variant (6) represents the longest
            transcript and encodes the longest isoform (6).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660825.68788.1,
                                           SRR7974084.8611.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-170               AC158997.2         127612-127781
            171-239             AC158997.2         139510-139578
            240-360             AC158997.2         141132-141252
            361-437             AC158997.2         141571-141647
            438-636             AC158997.2         143785-143983
            637-732             AC158997.2         146214-146309
            733-984             AC158997.2         147749-148000
            985-1100            AC158997.2         152405-152520
            1101-2497           AC158997.2         154038-155434
            2498-3156           AC158997.2         157440-158098
            3157-3183           BC043049.1         2960-2986
FEATURES             Location/Qualifiers
     source          1..3183
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 40.08 cM"
     gene            1..3183
                     /gene="Ccpg1"
                     /gene_synonym="1700030B06Rik; 1810073J13Rik;
                     9430028F23Rik; CPR8; D9Ertd392e"
                     /note="cell cycle progression 1"
                     /db_xref="GeneID:72278"
                     /db_xref="MGI:MGI:1196419"
     exon            1..170
                     /gene="Ccpg1"
                     /gene_synonym="1700030B06Rik; 1810073J13Rik;
                     9430028F23Rik; CPR8; D9Ertd392e"
                     /inference="alignment:Splign:2.1.0"
     exon            171..239
                     /gene="Ccpg1"
                     /gene_synonym="1700030B06Rik; 1810073J13Rik;
                     9430028F23Rik; CPR8; D9Ertd392e"
                     /inference="alignment:Splign:2.1.0"
     CDS             180..2687
                     /gene="Ccpg1"
                     /gene_synonym="1700030B06Rik; 1810073J13Rik;
                     9430028F23Rik; CPR8; D9Ertd392e"
                     /note="isoform 6 is encoded by transcript variant 6; cell
                     cycle progression 8 protein; cell cycle progression
                     protein 1"
                     /codon_start=1
                     /product="cell cycle progression protein 1 isoform 6"
                     /protein_id="NP_001346224.1"
                     /db_xref="GeneID:72278"
                     /db_xref="MGI:MGI:1196419"
                     /translation="MSESSSDSDSSCGWTVINHEGSDIEIVNSATASDNCGLTLECSL
                     VEQEELPVLYVGHGGEESSANNTSSVGETMLSSMRETKSAAEVEEAPSPEDNVYFGTT
                     SDDSDIVTLEPPKLEEMGNQEVTIQEAPSSDDLNMGSSSSSQYAFCQPEPERWWEKLW
                     KIPGCLRGWDDQLRLRVPSQLALQVFSSQPSDEESSSDDTSHEPSPAPRRRRNRKKTV
                     SISESEEPPLAEPEDEPSKEPSKRHFSRGLNKCVILALVIAVSMGFGHFYGTIQIQKQ
                     LVRKTHEDELDGVKGYLSQRKQEQESFLDFKSLKENLERCWTVTESEKITFETQKKNL
                     AAENQYLRISLEKEEQALSSLQEELRQLREQIRLLEDKGTSTQLVRENQVLKQYLEVE
                     KQKTDSFLREREMLLEEARMLKRDLEREQLTAMALRAELEQFIPGQAQSRAESPSVQT
                     EEKEVGLLQQRLAELEQKLIFEQQRSDLWERLYVEAKDQHGKQETDGRKRGSRGSHRA
                     KSKSKETFLGTVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRH
                     FKDTTKNIFDEKGSKRFRAPKEAATEKTRTAYSYSSYSQQEAPNQNQNCRRPSAQRDG
                     GREKPSHSEEIRKNANSYTYKAKSDCRGTHSTRRVCSGMFECAGQEAISPVNKASPVR
                     MNDFKQLIHWYLLNELETFHHWKELDQFISPFFPNGVFRHDQQLFADFVDDVKGYLKS
                     IKEYRVEDGNLEKLDGCIYRHFGHVFALPFGPSRPDKKQRMVTIENARHRKQEQKHLH
                     PQPYEREGKWQKYGRANGRHTANLELELGQLPFDPKY"
     exon            240..360
                     /gene="Ccpg1"
                     /gene_synonym="1700030B06Rik; 1810073J13Rik;
                     9430028F23Rik; CPR8; D9Ertd392e"
                     /inference="alignment:Splign:2.1.0"
     exon            361..437
                     /gene="Ccpg1"
                     /gene_synonym="1700030B06Rik; 1810073J13Rik;
                     9430028F23Rik; CPR8; D9Ertd392e"
                     /inference="alignment:Splign:2.1.0"
     exon            438..636
                     /gene="Ccpg1"
                     /gene_synonym="1700030B06Rik; 1810073J13Rik;
                     9430028F23Rik; CPR8; D9Ertd392e"
                     /inference="alignment:Splign:2.1.0"
     exon            637..732
                     /gene="Ccpg1"
                     /gene_synonym="1700030B06Rik; 1810073J13Rik;
                     9430028F23Rik; CPR8; D9Ertd392e"
                     /inference="alignment:Splign:2.1.0"
     exon            733..984
                     /gene="Ccpg1"
                     /gene_synonym="1700030B06Rik; 1810073J13Rik;
                     9430028F23Rik; CPR8; D9Ertd392e"
                     /inference="alignment:Splign:2.1.0"
     exon            985..1100
                     /gene="Ccpg1"
                     /gene_synonym="1700030B06Rik; 1810073J13Rik;
                     9430028F23Rik; CPR8; D9Ertd392e"
                     /inference="alignment:Splign:2.1.0"
     exon            1101..2497
                     /gene="Ccpg1"
                     /gene_synonym="1700030B06Rik; 1810073J13Rik;
                     9430028F23Rik; CPR8; D9Ertd392e"
                     /inference="alignment:Splign:2.1.0"
     exon            2498..3166
                     /gene="Ccpg1"
                     /gene_synonym="1700030B06Rik; 1810073J13Rik;
                     9430028F23Rik; CPR8; D9Ertd392e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3139..3144
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccpg1"
                     /gene_synonym="1700030B06Rik; 1810073J13Rik;
                     9430028F23Rik; CPR8; D9Ertd392e"
                     /note="hexamer: AATAAA"
     polyA_site      3161
                     /gene="Ccpg1"
                     /gene_synonym="1700030B06Rik; 1810073J13Rik;
                     9430028F23Rik; CPR8; D9Ertd392e"
                     /note="major polyA site"
ORIGIN      
        1 gaggaacttc aagtcccagc atgccttgct gcgccgcgcc tgccaccgct tccccgctgc
       61 ggacgcctgc gagcaggttg ttgtttttat gaggcgtcac tggcgtctgg agcgcggacg
      121 ccgccacggt gacagctggc gcggtcgggc ggaagaggcg ctgtcttcgg acctgaaaaa
      181 tgtctgaaag ttccagcgac agcgactcat cttgtggctg gactgtcatc aatcatgagg
      241 gttctgatat agagatcgtg aattctgcca cagccagtga caactgtgga ctgactctag
      301 aatgttcctt agtagaacaa gaggagctgc ccgttcttta tgtagggcat ggaggtgaag
      361 aaagcagcgc aaacaacaca tcgtcagtgg gagaaaccat gttgtcatca atgagagaaa
      421 ccaagtcagc agctgaggtg gaggaagcac cttcccctga agacaatgtc tatttcggaa
      481 ctactagtga cgattcggat attgttacac ttgaaccacc taagctggaa gaaatgggga
      541 accaggaagt tacaattcaa gaagcgccca gctcagatga ccttaacatg ggctcttcct
      601 ccagcagcca gtacgccttc tgccagccag aacccgaaag gtggtgggag aagctgtgga
      661 agattcctgg atgcttaagg ggatgggatg atcagctgag actacgtgtt cctagccagc
      721 ttgctctcca agtcttttca tctcagccta gtgatgagga atccagtagc gatgacacca
      781 gccacgagcc cagccctgct cctagacggc gccgcaacag gaagaagacc gtttctatct
      841 cagagtctga ggagcctcca ctcgctgagc cggaagatga gccctccaag gagccaagta
      901 aacgccactt tagtcgtggt ctcaacaagt gtgttatcct ggccttggtg attgctgtca
      961 gcatgggatt tggacatttc tatggcacaa tccagattca gaagcagtta gtcagaaaga
     1021 cccacgaaga tgagctggat ggtgtgaagg gttatctctc acagcgcaag caggaacaag
     1081 agtcttttct agatttcaag tcgctgaaag aaaaccttga gaggtgttgg accgttactg
     1141 aatcagagaa gattaccttt gaaactcaga agaagaacct tgctgcagaa aaccagtatt
     1201 tacgaatatc tctggagaag gaagaacaag ccctgtcttc attacaggaa gagctacggc
     1261 aactaaggga gcagattaga ttgttggagg ataaaggcac aagcacgcag ttagttaggg
     1321 agaaccaggt ccttaagcag tacttagaag tggaaaagca gaaaacagat agcttcctta
     1381 gggaaaggga gatgctcttg gaggaggcaa ggatgctgaa aagggacctg gagagggaac
     1441 agctcacagc catggctctg cgggcagaac ttgagcagtt catccctggc caggcacaga
     1501 gccgtgcgga gtctcctagt gtgcagactg aagagaagga agtggggctg ttacagcaga
     1561 ggctggctga gctggagcag aagctcatct ttgagcagca gcgctcggat ttgtgggaga
     1621 gactgtacgt tgaggcaaag gatcaacatg gaaagcagga gacagacggg aggaagagag
     1681 gaagcagagg aagccacagg gcgaagagca agtcgaagga gacatttctg gggacagtta
     1741 aggaaacatt tgatgctatg aagaattcta ccaaggagtt tgtgagacat cataaagaaa
     1801 aaatcaagca ggcgaaagaa gctgtgaagg agaatctgaa aaaattctca gattcagtca
     1861 aatccacttt tcgccatttc aaagatacta ccaagaatat ctttgatgaa aagggcagca
     1921 agagattcag ggctccaaaa gaagcggcaa ctgaaaagac aagaacagct tatagttatt
     1981 cctcatactc acagcaggag gcaccaaacc aaaaccagaa ttgcaggcgc ccttctgcac
     2041 agagggatgg agggagagaa aagcccagtc actctgaaga aattagaaag aatgcaaatt
     2101 catatacata caaggccaag tctgactgca gaggcaccca ttccaccaga agggtttgtt
     2161 caggtatgtt tgaatgtgct ggacaggaag ccattagccc tgttaataag gcgagtcctg
     2221 ttaggatgaa tgacttcaaa cagctgattc actggtactt actcaatgaa ctggagactt
     2281 ttcaccactg gaaagaactg gatcagttta tcagtccgtt ttttccgaat ggtgtcttta
     2341 gacatgacca gcagctcttc gccgactttg ttgatgatgt gaaaggttac cttaagagca
     2401 taaaggagta tcgagtagag gatggcaatc tggagaagtt ggacggatgt atatatagac
     2461 actttgggca tgtttttgcc ctgccattcg gacccagtcg acctgataaa aagcaacgta
     2521 tggtaactat tgaaaacgcc aggcaccgaa aacaagagca gaagcacctt catccacagc
     2581 cttatgaaag ggaaggtaaa tggcaaaaat acggtcgcgc taacggaaga cacacggcaa
     2641 atcttgagct agaactgggg cagttacctt tcgatcctaa gtactgattt gtgattaagt
     2701 taggaagtta agagctgtgg atgctatcta cttggtttga tgttgagatg aactccccat
     2761 gactgtcttt atattatgca aaagcaaagc ttactaactt gcattttcct gtagcttagg
     2821 tttgttaaaa acaaaaactt tttttcctgc tggggggggg tgggggaaat ggtagtttta
     2881 ttaaggaagc caggcatgaa atagtctgtg catgaaacag ggcttggttt gaggagctga
     2941 gctcagctca cacaggcatt tcgtgccgtg tggaggtgtg cagcagggcc tgaggactgt
     3001 gctgaggcgg gactccgcgc taacatctct actctcacgc ttttgtctct ctgtgggttc
     3061 aagagcccgt tggtttgtga agagctggct ggcttgtctt gtgaactctc ttgcacacct
     3121 gaatgctatg gaagaaacaa taaactgcac cgtgaggaaa actaaaaaaa aaaaaaaaaa
     3181 aaa
//
