LOCUS       NM_172839               3819 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus cyclin J (Ccnj), mRNA.
ACCESSION   NM_172839
VERSION     NM_172839.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3819)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC117253.3.
            
            On Oct 23, 2007 this sequence version replaced NM_172839.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK157841.1, AK052506.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-164               AC117253.3         115227-115390       c
            165-274             AC117253.3         114581-114690       c
            275-485             AC117253.3         109542-109752       c
            486-785             AC117253.3         101710-102009       c
            786-945             AC117253.3         101465-101624       c
            946-3819            AC117253.3         98097-100970        c
FEATURES             Location/Qualifiers
     source          1..3819
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 34.26 cM"
     gene            1..3819
                     /gene="Ccnj"
                     /gene_synonym="D430039C20Rik"
                     /note="cyclin J"
                     /db_xref="GeneID:240665"
                     /db_xref="MGI:MGI:2443297"
     exon            1..164
                     /gene="Ccnj"
                     /gene_synonym="D430039C20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            165..274
                     /gene="Ccnj"
                     /gene_synonym="D430039C20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             206..1345
                     /gene="Ccnj"
                     /gene_synonym="D430039C20Rik"
                     /codon_start=1
                     /product="cyclin-J"
                     /protein_id="NP_766427.1"
                     /db_xref="CCDS:CCDS29806.1"
                     /db_xref="GeneID:240665"
                     /db_xref="MGI:MGI:2443297"
                     /translation="MELEGQWWRGQLAADIHQALRYKELKLPSYKGQSPQLNLRRYFA
                     DLIAIVSNRFTLCPPARHLAVYLLDLFMDRYDISIQQLHLVALSCLLLASKFEEKEDS
                     VPKLEQLNSLGCMTNMNLVLTKQTLLHMELLLLETFQWNLCLPTAAHFIEYYLSEAVH
                     ETDLHDGWPMVCLEKTKLYMAKYADYFLEVSLQDYAFLNYAPSLVAAACVASSRIILR
                     LSPTWPTRLHRLTAYSWDFLVQCIERLLLAHDNDVKEANKQRGQSAPQSTQLTVFQTA
                     QPSRPVHFQQPQYLHQSSLQYRHPVSEQPSRQQIVSTTHTSSYTLQTCPAGFQTSVQG
                     LGHMQTGVGMSLAIPVEVKPCLSVSYNRSYQINEHFPCITPCFER"
     exon            275..485
                     /gene="Ccnj"
                     /gene_synonym="D430039C20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            486..785
                     /gene="Ccnj"
                     /gene_synonym="D430039C20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            786..945
                     /gene="Ccnj"
                     /gene_synonym="D430039C20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            946..3819
                     /gene="Ccnj"
                     /gene_synonym="D430039C20Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3797..3802
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccnj"
                     /gene_synonym="D430039C20Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3819
                     /gene="Ccnj"
                     /gene_synonym="D430039C20Rik"
                     /note="major polyA site"
ORIGIN      
        1 gtacggcgag ccgcctgccg gtcctttaac aatgggcggc gcgagcgccc gggtgctggg
       61 ccctagctga ggcgggggct tcgcggccga cggtccgcgg catgaacgct gccggcgccc
      121 cgtgcacgcc ggccgggctg gggctctgag ggccgcggtt ccggactgaa gttgcggcgt
      181 ctggccgggc gcacctccgg cttccatgga gctggagggg cagtggtggc gaggacagct
      241 ggctgcggat attcaccagg cgcttcggta caaggagctg aagctgcctt cttacaaggg
      301 ccaatctcct cagctgaacc tcaggcggta ttttgctgat ttgattgcca ttgtgagcaa
      361 tcgcttcacc ctctgccccc ctgcccgcca tctcgccgtc tacctgctgg acctgttcat
      421 ggaccgctat gacatctcca ttcagcagct acacttagtt gcgctttcct gtctgcttct
      481 agcaagcaaa tttgaagaaa aagaagacag cgtgcctaag ctcgagcagc tcaatagcct
      541 gggctgtatg acgaacatga acctcgtgct caccaagcag accctgctgc atatggagct
      601 gctcctgtta gagacctttc agtggaacct ctgcctgccc acggctgccc acttcattga
      661 gtactaccta tctgaagccg tgcacgagac agaccttcac gacggctggc cgatggtttg
      721 cttggagaag actaaactct acatggccaa atatgcagat tacttcctgg aagtgtctct
      781 gcaagattat gcctttctaa attatgcacc ttctttagta gctgctgcgt gtgtggcttc
      841 ttcgaggatt atccttcgtc tgtctccaac gtggcccacg agactgcacc gtctcactgc
      901 ctactcctgg gacttcttgg tgcagtgtat cgaacggctg ttgcttgctc acgataacga
      961 cgtgaaagaa gcaaacaagc agaggggaca gtcagctccc cagtcgacac agctgactgt
     1021 gttccagaca gcgcagccct cccggccggt tcacttccag cagcctcagt atctccatca
     1081 gagctccctg cagtaccggc atcctgtgtc agaacagccc agccgtcagc agattgtgtc
     1141 taccacacac acctcgtctt acacgctaca gacttgtccc gcgggcttcc aaacgagcgt
     1201 tcagggcctt ggccacatgc agactggtgt tgggatgtcc ctggcaatac cagtagaagt
     1261 taaaccctgc ctcagtgttt cttataaccg gagttaccag ataaacgaac atttcccgtg
     1321 tattacccca tgctttgaga ggtgatgacg tatgtatgca ggccacagac tgttctgagg
     1381 tggttagctc tggagcaagc cttttgtctt cctcttcaga aggaaagaat acaatcagta
     1441 catcaatgca acgggccgag gcaccggaag actgagtacc agtacccctt tcagtaccat
     1501 gagtgcttag gagggctctg caggtactga cgtgtcaaat cctgtgtgac agaaatgtcc
     1561 cagttcctga ctgatggtcc aaatatttca agatgctcaa tacagcagaa aatttgccat
     1621 tctaagattt gacctgttat gggctttggc cttatgctga catatatgtc aaagacttag
     1681 tgtttatctg tggacttgcc aaaccatctt ttatgaagga agttgcagta ttaatttttg
     1741 aagaattgtt ttaatcttgc agctcagagg ttttttttgg tttctttctt tttttttttt
     1801 ttttttttga cctactggta ggtttctaaa ttcaaactca ccagttgcta cgtatactaa
     1861 tctgtgcagt taaaaaaatc cagatgattt ttatataact tcatatcata aatacaggtg
     1921 ctggatttat atactgcaat taggggcgaa gcagatccat accttgaaat catggtcata
     1981 attttggttt tgctctgctg ccttttccca ctaagtgatc agccccagtt cttcagggtt
     2041 aagcacgttt aactcaggga ccttgtagca cttggaaaca cttggctcta accgacatgc
     2101 cttgggagta ttagaatatg agctacccgt gcaacatcgg ctgcagtgct cctgctggga
     2161 tgagaatcga tcacggcaca ggacgaatgc agtgggtcct gtgttcgtgc acggacaggc
     2221 tgggcatcac ccagtgattg gctgttgctc ctgaaggcag ttttcaggag aaggcattct
     2281 atgaagtgtc agtgctagag tcgagtcagg taggattgtt cttgggttca ggatggctcg
     2341 ggtagtgctc agcgtgggct gacgcagcac tttgttatgg gagggtggtt cagtgagtgc
     2401 ccttgggatc cagcaagtca ggcaagcagg agtgctgatc ttagtagcca ctttctgtgg
     2461 ttggctgtgt acctgccggg agacaagtct ttgtattgat agtgagtgaa agcagcagta
     2521 atagtcatac ccggggcaac ctggccataa aatactgtca ggaagtatgg aggacagact
     2581 tcagaagtaa aaagatggct gatgaactgt aagcatagta gtcttatcca tgcaggagga
     2641 aggagctggt gggggggaca ctttctggtt taaaatgagt aaggcgtgtt tgattttata
     2701 agatagcact tgaatagaag ggaaactgtg gcagctatga gacacagtgt ctattggcga
     2761 gagctcgctg taaagatgtg ggtatgcagc aggagtcggt ggcctttgct gggaagggac
     2821 ggaagggctc cacagcctga tggactgaca ggcagctccg gaggagaagt gcccgtgggc
     2881 agcttctgcc aacaggagtt cttccggaaa tgtgctttcc ttaaaaggaa gctaactttt
     2941 atatttagcg tacagaaggc ctggtgatga aaaccactca ggtaagaaca cttgtggcag
     3001 ttttcaagca tgaaaactgt tgtaggaacg tatcactttt cctctttaaa aaggctgcta
     3061 attggatttt tataattctt aagaaaactt gaattaggag gaggaagtgg gttcaaaaga
     3121 taatgtctct ttcccgttca cagatagagg cctgcagcat ggagtccagt gttgagtatt
     3181 gtaactacct cagtaatgct atgaatgtaa gagattggga gagaatccta acttgaaaca
     3241 acagccagtg cctgtggtga tttaatgtct tgtcagtgct tttattgatt ggttatgtgt
     3301 cattcttgtt gtcaaagaat acttgccttt ttaaagaagc ttattaacac tttccagttt
     3361 atatttaaaa agctaaagaa cactggatta atccttcttg ggggtagagt caaataattg
     3421 atgactattg ctgcataccc ggatggggag gctggagaat catgattatt tttaaaaaca
     3481 ggagaattca gtatataatg caactcaaca acagttagct ggggaggggg gcggggggtt
     3541 gttttgttta atttattaat tagtcttaag aggttttttt ttttctgttt tgttttgaga
     3601 ttactggacc atcattaaat gtgtactgtg aagagattaa tgatgtgtgt aaaggactta
     3661 accagagtcc actaataaac actattcaag tacaaaaacg caaaccaaat atctgtgcta
     3721 tgactaacta caaacagtga gtatggtgct aagtctacac agcagggtta gatgagtgct
     3781 gtgcacttga ttttaaaata aaagtagttt tcactaaaa
//
