LOCUS       NM_001384260             589 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus C-C motif chemokine ligand 27b (Ccl27b), transcript
            variant 5, mRNA.
ACCESSION   NM_001384260 XM_030252994
VERSION     NM_001384260.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Davila ML, Xu M, Huang C, Gaddes ER, Winter L, Cantorna MT, Wang Y
            and Xiong N.
  TITLE     CCL27 is a crucial regulator of immune homeostasis of the skin and
            mucosal tissues
  JOURNAL   iScience 25 (6), 104426 (2022)
   PUBMED   35663027
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 589)
  CONSRTM   IUIS/WHO Subcommittee on Chemokine Nomenclature
  TITLE     Chemokine/chemokine receptor nomenclature
  JOURNAL   J Immunol Methods 262 (1-2), 1-3 (2002)
   PUBMED   12080938
REFERENCE   3  (bases 1 to 589)
  AUTHORS   Piao Y, Ko NT, Lim MK and Ko MS.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   4  (bases 1 to 589)
  AUTHORS   Nakano H and Gunn MD.
  TITLE     Gene duplications at the chemokine locus on mouse chromosome 4:
            multiple strain-specific haplotypes and the deletion of secondary
            lymphoid-organ chemokine and EBI-1 ligand chemokine genes in the
            plt mutation
  JOURNAL   J Immunol 166 (1), 361-369 (2001)
   PUBMED   11123313
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX548253.32.
            
            On Jun 12, 2020 this sequence version replaced XM_030252994.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: ERR3363658.4181232.1,
                                           ERR3363657.286744.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-43                BX548253.32        65424-65466
            44-110              BX548253.32        65859-65925
            111-170             BX548253.32        66137-66196
            171-268             BX548253.32        69066-69163
            269-401             BX548253.32        70360-70492
            402-589             BX548253.32        70682-70869
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 22.73 cM"
     gene            1..589
                     /gene="Ccl27b"
                     /gene_synonym="Ctack; Scya27b"
                     /note="C-C motif chemokine ligand 27b"
                     /db_xref="GeneID:100040048"
                     /db_xref="MGI:MGI:1891389"
     exon            1..43
                     /gene="Ccl27b"
                     /gene_synonym="Ctack; Scya27b"
                     /inference="alignment:Splign:2.1.0"
     CDS             16..558
                     /gene="Ccl27b"
                     /gene_synonym="Ctack; Scya27b"
                     /note="isoform 5 is encoded by transcript variant 5; small
                     inducible cytokine A27b; chemokine (C-C motif) ligand 27b"
                     /codon_start=1
                     /product="chemokine (C-C motif) ligand 27b isoform 5"
                     /protein_id="NP_001371189.1"
                     /db_xref="GeneID:100040048"
                     /db_xref="MGI:MGI:1891389"
                     /translation="MQAPHIECEGTVRSPDRSRLRRYEVALEAEEDIYWGCFYFFPWL
                     RMWRRERSPMSPTSQRLSLEAPSLPLRSWHPWNKTKQKQEALPLPSSTSCCTQLYRQP
                     LPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGT
                     VPSLNLVLQKKMYSHPQQQN"
     exon            44..110
                     /gene="Ccl27b"
                     /gene_synonym="Ctack; Scya27b"
                     /inference="alignment:Splign:2.1.0"
     exon            111..170
                     /gene="Ccl27b"
                     /gene_synonym="Ctack; Scya27b"
                     /inference="alignment:Splign:2.1.0"
     exon            171..268
                     /gene="Ccl27b"
                     /gene_synonym="Ctack; Scya27b"
                     /inference="alignment:Splign:2.1.0"
     exon            269..401
                     /gene="Ccl27b"
                     /gene_synonym="Ctack; Scya27b"
                     /inference="alignment:Splign:2.1.0"
     exon            402..589
                     /gene="Ccl27b"
                     /gene_synonym="Ctack; Scya27b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccccttctgg gtgatatgca agccccacac atagaatgcg aaggaaccgt tcggagcccg
       61 gacaggtcgc gattgaggag atacgaggtg gcgctggaag cggaggagga tatctactgg
      121 ggctgcttct acttttttcc ttggctgcga atgtggcgca gggagcggag tccgatgtct
      181 ccaacaagcc agagactaag tctggaagcc cccagcctcc cactgagaag ctggcatccg
      241 tggaacaaga ctaagcagaa gcaagaagcc ttgcctctgc cctccagcac tagctgctgt
      301 actcagctct atagacagcc actcccaagc aggctgctga ggaggattgt ccacatggaa
      361 ctgcaggagg ctgatgggga ctgtcacctc caggctgtcg tgcttcacct ggctcggcgc
      421 agtgtctgtg ttcatcccca gaaccgcagc ctggctcggt ggttagaacg ccaagggaaa
      481 aggctccaag gaactgtacc cagtttaaat ctggtactac aaaagaaaat gtactcacac
      541 ccccaacagc aaaactaata aagcaacatt agacgacaat ctccaaaaa
//
