LOCUS       NM_001001982            4712 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus coiled-coil domain containing 9B (Ccdc9b), mRNA.
ACCESSION   NM_001001982 XM_141317
VERSION     NM_001001982.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4712)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4712)
  AUTHORS   Xu,X.Q., Soo,S.Y., Sun,W. and Zweigerdt,R.
  TITLE     Global expression profile of highly enriched cardiomyocytes derived
            from human embryonic stem cells
  JOURNAL   Stem Cells 27 (9), 2163-2174 (2009)
   PUBMED   19658189
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL772255.12.
            
            On Mar 18, 2021 this sequence version replaced NM_001001982.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK137584.1, SRR11927934.4868767.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-152               AL772255.12        57750-57901         c
            153-266             AL772255.12        56889-57002         c
            267-374             AL772255.12        56533-56640         c
            375-530             AL772255.12        55770-55925         c
            531-659             AL772255.12        55565-55693         c
            660-859             AL772255.12        54752-54951         c
            860-915             AL772255.12        54445-54500         c
            916-969             AL772255.12        53834-53887         c
            970-1060            AL772255.12        53657-53747         c
            1061-1100           AL772255.12        53083-53122         c
            1101-4712           AL772255.12        49389-53000         c
FEATURES             Location/Qualifiers
     source          1..4712
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 59.45 cM"
     gene            1..4712
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /note="coiled-coil domain containing 9B"
                     /db_xref="GeneID:214239"
                     /db_xref="MGI:MGI:2685199"
     exon            1..152
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /inference="alignment:Splign:2.1.0"
     CDS             141..1643
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /note="uncharacterized protein C15orf52 homolog"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 9B"
                     /protein_id="NP_001001982.3"
                     /db_xref="CCDS:CCDS50670.1"
                     /db_xref="GeneID:214239"
                     /db_xref="MGI:MGI:2685199"
                     /translation="MHLAGPHKAESTMRRHEEKDAELDRRIVALRKKNQALLRRYQEI
                     EEDRRQAEQGGMAVTTPGLLQPDSLTVTISQVPGEKRVVSRNWARAPLSPGVTTTLTD
                     DEDAADAPGTFSMGHRVELAVTMENKAKAKRIVSEKPTTQARSPRAKGTSGGGRSWRA
                     PLQMTSSSDSAGKGVLEPRSPGVVSSPPPQQSLGLSPEASWDYTQWKQEREQIDLARL
                     ARHRNPQGDWSRPWDLDKAKSMPQNCHKPRDRDLAMGSRKGPRTHQKPQHPPSSLDGK
                     CRGGQSGRPSMTSTIGSNAQGKERLTGRARRYDMKEDEMLQSQEGSQSSTKTPSAEEE
                     FVQKRNEREPDRQETVPATSPIPASPEGLKGESGTSTASLAPDSPQHSDLAPLDLSVG
                     GASSRKPGKSTCILGPKAGAQQSPVSWPNGSEQQTLGCTDHQPGLEVHSCTESQRKAQ
                     TPEPMEDRAGKAGAQENLTPRSRPPRGIGPRARGTSKRSRAGGPGPAGRC"
     exon            153..266
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /inference="alignment:Splign:2.1.0"
     exon            267..374
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /inference="alignment:Splign:2.1.0"
     exon            375..530
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /inference="alignment:Splign:2.1.0"
     exon            531..659
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /inference="alignment:Splign:2.1.0"
     exon            660..859
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /inference="alignment:Splign:2.1.0"
     exon            860..915
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /inference="alignment:Splign:2.1.0"
     exon            916..969
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /inference="alignment:Splign:2.1.0"
     exon            970..1060
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /inference="alignment:Splign:2.1.0"
     exon            1061..1100
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /inference="alignment:Splign:2.1.0"
     exon            1101..4712
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4679..4684
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /note="hexamer: AATAAA"
     polyA_site      4704
                     /gene="Ccdc9b"
                     /gene_synonym="A430105I19Rik; Gm353"
                     /note="major polyA site"
ORIGIN      
        1 acaacatgat ctcttgtgct gagcagcgaa gcagaagccg gcagggagag gccgacaggg
       61 ccggctctgg tggctccagc ttccctccag ctctggctcc cgggagctgt tttgaaattc
      121 tctcagcgcc tggtatttcc atgcatttgg ccgggcccca caaagccgag tccacaatgc
      181 gccggcatga ggaaaaagat gccgagctgg accgtaggat agttgccttg cgcaagaaga
      241 accaggcctt actacgaagg taccaggaga tcgaggaaga tcgtcggcag gcggagcagg
      301 ggggcatggc tgtgaccact ccagggctcc tccaacccga cagcctcacg gtcaccatca
      361 gccaggttcc cggtgagaag agggtggtca gcagaaactg ggccagggcg cccctttcac
      421 ctggagtgac taccacactg acagatgatg aagatgctgc agacgcaccg ggtactttca
      481 gcatggggca ccgggtggaa cttgctgtca ccatggaaaa caaagccaag gccaaaagga
      541 tagtaagtga gaaacccacg acccaagcgc ggagcccaag ggcaaagggg acatctggag
      601 gaggccggag ctggcgtgca cccttgcaga tgacttccag ctcagattca gcagggaagg
      661 gtgttctgga gccccggagt ccaggcgtgg tctcaagtcc acctccccaa cagtccttgg
      721 ggctgtcccc tgaggccagc tgggactaca cgcagtggaa acaagagaga gagcagattg
      781 acctggcccg ccttgcccgg cacagaaacc cacagggtga ctggagccgc ccgtgggacc
      841 tggacaaagc caagtccatg ccacagaact gccacaagcc tagggacagg gacctggcca
      901 tgggcagcag gaagggtcct aggacccacc agaagcctca gcacccacca tcatccctgg
      961 atggaaaatg tcggggtgga caatctggaa gaccctcgat gacatccacc ataggcagca
     1021 acgcccaggg gaaggagagg ctaactggca gggcccgaag gtatgacatg aaagaagatg
     1081 agatgctgca gagccaggag ggaagccaga gcagcacgaa gactcccagt gcagaggaag
     1141 aattcgtaca gaagcggaat gaaagggagc cagacagaca agagaccgtg cctgcaacca
     1201 gcccaattcc agcctcccca gaggggctaa aaggagagtc ggggacctct acagccagtt
     1261 tggccccaga ctctccacaa cattctgact tggctcccct cgacctctct gtgggaggag
     1321 ctagcagccg caagcctgga aaaagtacat gtatactcgg tccaaaggct ggggctcagc
     1381 aaagtccagt gtcatggcca aatggttctg agcagcagac cctggggtgc actgaccacc
     1441 agcctgggct ggaagtccac agttgcactg agtcacagag gaaagcacag accccagagc
     1501 ccatggagga cagggctggc aaggctgggg cccaagagaa tctgacacca agaagcaggc
     1561 cccccagagg aattggccca agggcaagag gcacaagtaa aagaagcagg gcaggaggtc
     1621 ctggccctgc aggaagatgc tgagtagagc tcaggagagt tggggagcta ggctgcgaag
     1681 gggagaactc agtcaagagt cttctgtgtg gtgggagtta cggctgctgg tgggagtctg
     1741 gtacctttct ggttgagcaa tgcagcaaaa ttccacaggg acaccatgta agggcctctt
     1801 atgcatacct ctacactagt gggtttctac atgtagtcaa ggctcttggt gtattggcca
     1861 ggctgggatc tcttgttcaa ggctggtatc cctgtcctgg tcttacctag gccataggca
     1921 tttcccacca agcaagattt ggtaggagcc caatacatgg atctcctggc tccttatagt
     1981 tcgtcattgc caactctccc tctccagtca caagccttca ggctcctgag ctctaggcag
     2041 tctcaaagct ggcatggcca gcctagcccc tttctgataa ccatgccttt catccaggtg
     2101 actcacagtt ctgctcttct aagatggcca aaccaggatt tcaacagtcg cttgaggcct
     2161 agagaaagtg gtttggggct catggctgac aggaacacac atggagagga acagaaaaac
     2221 ccaaggcttc ttggggggac agggcatcca gcagggctct ttgaactgtg ctaggattct
     2281 ccttttgcca cgggaaaatg agagagctca ctagtaggtg ctgagccttc ctccgcatat
     2341 ccagatcaga catcgtgggt gccctgaata gaccctgcag cccagggcca tttcctgccc
     2401 tctcttcctt ctccactttc cctcaccaag gccatgcaaa agcaagcaca cagtacagtc
     2461 agaggattag caacctcagc taagtgcatc aggatgtgtc tttccaactc catccaggcc
     2521 cctcccatga ggcccacgtc tggtgaatta tccagactct gcacaagctg tggcttcctt
     2581 ttgatacaac aaacatttcc tgagcatctt ctcccagtaa tccagccagt gggcgagggt
     2641 gactctgcca gccggaggga gggaagacac tcagtcatcc aacagctcaa ggctgaatgg
     2701 caagtgctgt tctcatctgt agaagcctgg tagccccggg tgtgatgagg gtaggtgcct
     2761 gaagagaccc accctgcctc tgctcccctc ttttgatatg gcatgtgccc tttgcatctt
     2821 ggtggcacca tgcagccccc tcctcccttc ctctctacaa gggtaactgg gtcttccata
     2881 accctcatct ttacacgtga ggccttcaac ttgggttcct gccttgttct tccttcctgc
     2941 ctcttggttc catgtctatt ccctctactc aggcaagggt gactgactct tcagcaagtc
     3001 aggctgttta gagaactctt ctcatgtttt tgtgtgatgt gtggtacagg ttgaactcag
     3061 tggggctggg gaaggcctga acgttagcat ttctaacatg tcccaggtga gggagccatg
     3121 gcctcctttt tggcctgaag aaccctttga ggagtcaggt tctggattcg agtgtgaagg
     3181 gttcagatta gagcagactc tagatctaaa gcaagtttcc agctctgcaa gaactagggg
     3241 gatgctaccc tgccaagtgg aagaggtttc ctggctttag acgtgcccac aggtggtggc
     3301 tgagaggaag tccagaaagg gaaaaaaata ggagacacgc ctgggcccga gtgtagaatc
     3361 caaattcacg ttttcatttt gccttccagt ctcaagtata ttttgacttt gaagtgtgac
     3421 acaggccctg gagctcatga ctcctcaaga tgggactgga acagagcatg ttcaggcaga
     3481 gagagctctt gagtccacat gttgcaaaga aatggctgtg atcaggaatc tgaatccttg
     3541 gctgggccgt aggttgatag agtccattct cagcacgcat gaactcatag gttcagtctt
     3601 agacagacag acagacagac agacagacag aggagatgag aagaaaagaa aggaagagag
     3661 aagaaaagga gggagtaggg aagagggagg gagagagaaa agagaagatt caaagtttgc
     3721 ttcccacttg atgttgccaa ctgtgcaatg cgatccgtca gacaacacag ggcaaggcaa
     3781 gtttgaccac aggttgagga cgtaaaaatc tggcagggtt ctggttcagt ctttacaaat
     3841 gaacctaagc aggagaagga gctattagag aggactaaga ggacgtgggc ttctcttcat
     3901 gggcaacagc ctttagggta ctgaggaaag ctgtcccggg gattgatgag aatggaagcc
     3961 aacacaggac accttcattc cagaagcctg cagtgcgggc aacagcagga agctcttccc
     4021 gagaaagggg agctcttctc caggaaaaga cacaggtcac acctcccaac tctctgtcca
     4081 ggttgtgcca tcctgctctg ttagagtcaa ctatggagca gaagaaaccc aggtcaacca
     4141 ttcctcttga ggcctcaaag ggccagccat gattcttcct agttgctttg ttgaaaggtc
     4201 tgacccagag tcttccttcc cttaggaaac cctcttccct ccaacaagta cacaagacta
     4261 ctgtttacaa gtcggagtcg tcattaaaca caaacaactc tgggaaacca gatgcagggc
     4321 tggaaggagc caagcaagga gggtacccag gaggagctgg cagggcgaga acacctggag
     4381 atgaggggag cagagtgtgt gggtgggggg ggggatggag agcatcctgt cagacaggtg
     4441 cgagttgaga tctcaggcac caggtagagc gaagcacacc ttggagtctg agagactaaa
     4501 ccctgcacct ctcatctacc ttgctcaacg ttaacctcta aaagcctcag tccccttacc
     4561 tgcagaagga ggcttgctgt cctgaccttg aagggttgct gagaatgcta gagtgtgcaa
     4621 accatgccta cactaagtag acactctggg aacagtagcc tgatgctctg aaaacatgaa
     4681 taaatgaagt gggcgttgac atgaggtctt ta
//
