LOCUS       NM_028771               2973 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 97 (Ccdc97), transcript
            variant 1, mRNA.
ACCESSION   NM_028771 NM_028346
VERSION     NM_028771.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2973)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC162614.2.
            
            On Feb 9, 2019 this sequence version replaced NM_028771.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC078634.1, AK155466.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849382, SAMN00849383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-118               AC162614.2         54696-54813
            119-571             AC162614.2         57544-57996
            572-841             AC162614.2         58711-58980
            842-971             AC162614.2         59249-59378
            972-2973            AC162614.2         60618-62619
FEATURES             Location/Qualifiers
     source          1..2973
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 13.99 cM"
     gene            1..2973
                     /gene="Ccdc97"
                     /gene_synonym="1200014H14Rik; 2810446P04Rik; D7Ertd462e"
                     /note="coiled-coil domain containing 97"
                     /db_xref="GeneID:52132"
                     /db_xref="MGI:MGI:1196455"
     exon            1..118
                     /gene="Ccdc97"
                     /gene_synonym="1200014H14Rik; 2810446P04Rik; D7Ertd462e"
                     /inference="alignment:Splign:2.1.0"
     CDS             70..1092
                     /gene="Ccdc97"
                     /gene_synonym="1200014H14Rik; 2810446P04Rik; D7Ertd462e"
                     /note="isoform 1 is encoded by transcript variant 1;
                     coiled-coil domain-containing protein 97"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 97 isoform
                     1"
                     /protein_id="NP_083047.1"
                     /db_xref="CCDS:CCDS20994.1"
                     /db_xref="GeneID:52132"
                     /db_xref="MGI:MGI:1196455"
                     /translation="MEAVAAAEVTERKPDNDGVEPRVVHWGELSQTPIPSGPQEKETA
                     ERTPDIPNSGSSQAESPAVSAMLHAIAASHLPVCSQQQGEPDLTEPEKVAILGQLYHK
                     KPLVFLERFRTGLREEHLACFGHLRGDHRADFYCAEVARQGTARPRTLRTRLRNRRYA
                     ALRELIQGGEYFSDEQMRFRAPLLYEQYIGQYLTQEELNARTAAPQAPRSGSPGTPAY
                     PLSDLLFQSYQERELQQKLLQQQEEEEACFEEEEDSDEEDQRSDKDSEAWVPDSEERL
                     ILREEFTSRMHQRFLDGKDGGFDYSTVDDNPDFDNLDIVARDEEDRYFDEEEPEDVSS
                     AELGGD"
     exon            119..571
                     /gene="Ccdc97"
                     /gene_synonym="1200014H14Rik; 2810446P04Rik; D7Ertd462e"
                     /inference="alignment:Splign:2.1.0"
     exon            572..841
                     /gene="Ccdc97"
                     /gene_synonym="1200014H14Rik; 2810446P04Rik; D7Ertd462e"
                     /inference="alignment:Splign:2.1.0"
     exon            842..971
                     /gene="Ccdc97"
                     /gene_synonym="1200014H14Rik; 2810446P04Rik; D7Ertd462e"
                     /inference="alignment:Splign:2.1.0"
     exon            972..2973
                     /gene="Ccdc97"
                     /gene_synonym="1200014H14Rik; 2810446P04Rik; D7Ertd462e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2951..2956
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc97"
                     /gene_synonym="1200014H14Rik; 2810446P04Rik; D7Ertd462e"
                     /note="hexamer: ATTAAA"
     polyA_site      2973
                     /gene="Ccdc97"
                     /gene_synonym="1200014H14Rik; 2810446P04Rik; D7Ertd462e"
                     /note="major polyA site"
ORIGIN      
        1 gcgggtacct agggtccagc ctggcttccg gagcccgctg tggcggttac tgtgttgaag
       61 agacctgtta tggaggcggt ggcagctgca gaggtgacgg agaggaagcc ggataatgac
      121 ggcgtggagc ccagagttgt gcactggggg gagctgagcc agactcccat tccatctgga
      181 ccgcaggaga aggagacagc agagaggaca ccagacatcc ccaacagtgg cagctcccag
      241 gcagagagcc cggctgtgag tgccatgttg catgccatcg ctgccagcca cctgcctgtg
      301 tgcagccagc agcagggtga gcctgatctg acagagcctg agaaggtggc catcctgggc
      361 cagctgtatc acaagaagcc gctggtgttc ttggagcgct tccgcacagg cctccgggaa
      421 gagcacctgg catgcttcgg ccatctgcgt ggagaccacc gtgctgattt ctactgtgcc
      481 gaggtggccc ggcaaggcac tgcccggcct cgaaccctgc gcacccgcct gcgtaaccgg
      541 cgttatgctg ccctgcgtga gctcatccaa ggaggcgagt actttagcga cgagcagatg
      601 cggttccgtg ccccactatt gtatgagcag tacataggac aatacctcac ccaggaagag
      661 ctcaatgccc gcacagcagc cccgcaagcc cccaggtccg gctctcctgg cacgcctgcc
      721 tatccactct ccgacctgct gtttcagtcc taccaggaac gggagctgca gcaaaagctg
      781 ctccagcagc aggaggagga ggaggcctgc tttgaggagg aagaggacag tgatgaggaa
      841 gaccagaggt cggataaaga ctcggaagcc tgggtgcctg actcggaaga gaggctgatc
      901 cttcgcgagg agttcaccag ccgcatgcac cagcgattcc tggacggcaa agatgggggc
      961 tttgactaca gcacggtgga tgacaaccct gactttgaca acctggacat tgtggcccgt
     1021 gatgaggagg accggtactt tgatgaagag gagcctgagg atgtgtctag tgcagagctg
     1081 ggtggggact gatggctctc acccttgtag ccaccccgca ggccgctggc taaaaccggc
     1141 ttagtgactc aggcccctct agacttggcc cacctcagac aatgcctcca cttgtgttta
     1201 ggggttccca ctcctctctg ggaacattac tgctcctctg gctctggccc cacctgtctt
     1261 ttctctttga gacaggatct tattatataa cttgcctgtg ttacttgctt tgtagccaag
     1321 gctggcctga aactcagtcc tcctgcctcg gctgccccca ggttgcgtgt acaggcgagt
     1381 ccctatgccc tgtctacctg tcttgttctt actcactttc tcccttcatg ccactgcccc
     1441 acctctcgct tcctaagtct aacctctgcg catccacctt gtacccatct gtgtcacggg
     1501 tgctgtgccc acagcagggc cctaacaact gtctggtggc tgcagctgcc ccatggatgc
     1561 tagtgtccag ctccaccaga atgccagcgc agctcttgag tttctccacc tctctctgcc
     1621 agtgtcctac gcagggccct cttgcttccc ccaagctccc accttaccct ccatgcctcc
     1681 ccacccttgt tcacgcccat ggatcccctg gccttgatgt ctgcccctct ttctcagcct
     1741 ttactgctct ggctctctgg gtccccctcc ccaggcctgg cagccaaggg catcagaagc
     1801 cttccctgtg ggtggaggtt aggggaaccc aggtggcacc agcctctgct gctccttttt
     1861 ggacactagc tgggagtgcc ggcagaggca gggctgggta ccacagggcc agcttgagtg
     1921 tgggaggaac ttgaagaggg ggactctccc ctaccaaccc cccctttcca gccacagttt
     1981 tccttttcct cacttcctcc acctccacct cccttccctc tccctctccc tctccctctc
     2041 cctcgcctgt ttacactccc caaatacgca caggctgtta tcatgggtct tgagtcatca
     2101 cacacagaca cacagcctgc cccagtgtcc ctgcccccag ctggccacag ggcccgcccc
     2161 acagagcccc ctgctgccct gggctaatga aagccagatg gctgcctgtg actcagccat
     2221 ggcctgtggg aacccagacg ccctaccttc ccatgcccca cacccggccc ctgcgtcccc
     2281 agcagacaga agcaacctgc tcctgtgggg atggaggcca gcgtgtctgg gcctgagaat
     2341 ccaaactgct gtggcactga atggcaaatg gctgcattct gctctggcca tacctgaagg
     2401 aacctaaaac tgctttgtaa agccaaggtc ctgaccctgg gtcttggctc tgccctctgt
     2461 atcaagtaaa ctcacccagt ggggtagaag gtgttctctt aaactgttga aagatcctca
     2521 acagctcagc ctgggccagg cctgactgac acctcctaac agacctggaa acaagactgt
     2581 tggtcgccac ttgtctcaaa ggatggaaag aacccagaag tagccatttg catcttgaga
     2641 ccacctggtc tcccatgcag aaccaagact ggaacacact tggccagtgt gcctccatgt
     2701 gtcctcattg gacagcggtg gagatccgaa gacagacttc ctcccatctc gggggactgt
     2761 agaaggtgca ggtgttgtgg tacacagtat ggtggcaggt ggtggactgt tataccccta
     2821 cccttacctc cccagaggac gcagtgagtc cccagctggg atcccaccac actggacagg
     2881 agccaggagt gctcttttgg gaagttgtgg cttaggtatt tttcacagtt gaccagtgtt
     2941 ctgtccgatc attaaactta tttaagatag aaa
//
