LOCUS       NM_025911               2477 bp    mRNA    linear   ROD 04-MAR-2025
DEFINITION  Mus musculus coiled-coil domain containing 91 (Ccdc91), transcript
            variant 1, mRNA.
ACCESSION   NM_025911
VERSION     NM_025911.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2477)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2477)
  AUTHORS   Govero,J., Doray,B., Bai,H. and Kornfeld,S.
  TITLE     Analysis of Gga null mice demonstrates a non-redundant role for
            mammalian GGA2 during development
  JOURNAL   PLoS One 7 (1), e30184 (2012)
   PUBMED   22291915
REFERENCE   3  (bases 1 to 2477)
  AUTHORS   Georgas,K.M., Chiu,H.S., Lesieur,E., Rumballe,B.A. and Little,M.H.
  TITLE     Expression of metanephric nephron-patterning genes in
            differentiating mesonephric tubules
  JOURNAL   Dev Dyn 240 (6), 1600-1612 (2011)
   PUBMED   21491542
REFERENCE   4  (bases 1 to 2477)
  AUTHORS   Combes,A.N., Lesieur,E., Harley,V.R., Sinclair,A.H., Little,M.H.,
            Wilhelm,D. and Koopman,P.
  TITLE     Three-dimensional visualization of testis cord morphogenesis, a
            novel tubulogenic mechanism in development
  JOURNAL   Dev Dyn 238 (5), 1033-1041 (2009)
   PUBMED   19334288
REFERENCE   5  (bases 1 to 2477)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   6  (bases 1 to 2477)
  AUTHORS   Suzuki,H., Fukunishi,Y., Kagawa,I., Saito,R., Oda,H., Endo,T.,
            Kondo,S., Bono,H., Okazaki,Y. and Hayashizaki,Y.
  TITLE     Protein-protein interaction panel using mouse full-length cDNAs
  JOURNAL   Genome Res 11 (10), 1758-1765 (2001)
   PUBMED   11591653
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK007917.1, AK007017.1 and CO038888.1.
            
            On Jul 19, 2005 this sequence version replaced NM_025911.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC049073.1, AK007917.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-497               AK007917.1         2-498
            498-782             AK007017.1         422-706
            783-2451            AK007917.1         784-2452
            2452-2477           CO038888.1         1-26                c
FEATURES             Location/Qualifiers
     source          1..2477
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 78.22 cM"
     gene            1..2477
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /note="coiled-coil domain containing 91"
                     /db_xref="GeneID:67015"
                     /db_xref="MGI:MGI:1914265"
     exon            1..189
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /inference="alignment:Splign:2.1.0"
     exon            190..233
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /inference="alignment:Splign:2.1.0"
     CDS             204..1532
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /note="isoform 1 is encoded by transcript variant 1;
                     coiled-coil domain-containing protein 91; GGA-binding
                     partner"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 91 isoform
                     1"
                     /protein_id="NP_080187.2"
                     /db_xref="CCDS:CCDS20707.1"
                     /db_xref="GeneID:67015"
                     /db_xref="MGI:MGI:1914265"
                     /translation="MDDDDFGGFEAAETFDGEQGGNQAVSPAVPWATFPAVSGVRLSP
                     ASPELILDHDHSSPSTGHLPPDAVISSADDTHADSSLMSQTISKAQIQQSAHTHLNIP
                     LFPLGLTDEPSHGALALEDEPEGPGVHVSNSQLRQKISSLETKLKASEEEKQRIKKDV
                     ESLMEKHSVLEKGFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEY
                     KALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLDVLDTEKELLREKIQE
                     ALTQQSQEQKESLEKCLQEEMQRNKETLESAVKLEKEAMKDVITKAVGEERENLEKVH
                     AEERELWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIVEEQRRSEKAMEEAVKR
                     TRDELVEYVREQRRLDQVTRQRSLSSLELFLSCAQKQLSALIATEPVDIE"
     exon            234..312
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /inference="alignment:Splign:2.1.0"
     exon            313..473
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /inference="alignment:Splign:2.1.0"
     exon            474..677
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /inference="alignment:Splign:2.1.0"
     exon            678..782
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /inference="alignment:Splign:2.1.0"
     exon            783..860
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /inference="alignment:Splign:2.1.0"
     exon            861..968
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /inference="alignment:Splign:2.1.0"
     exon            969..1061
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /inference="alignment:Splign:2.1.0"
     exon            1062..1130
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /inference="alignment:Splign:2.1.0"
     exon            1131..1307
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /inference="alignment:Splign:2.1.0"
     exon            1308..1421
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /inference="alignment:Splign:2.1.0"
     exon            1422..2459
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1640..1645
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /note="hexamer: AATAAA"
     polyA_site      1674
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /note="major polyA site"
     regulatory      2437..2442
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /note="hexamer: AATAAA"
     polyA_site      2459
                     /gene="Ccdc91"
                     /gene_synonym="1700086G08Rik; 1810060J02Rik; p56"
                     /note="major polyA site"
ORIGIN      
        1 gggcctaggt agaaatcaac ttccggtgag gatgtcctgg acgccgggtg gtgtgtgggc
       61 tgcccgaacg tgggttcctg ggccagcagt caccgggagg ggggtggttg cgtagccggt
      121 gtcccggagc cagtgtctga gagccgggtg tgacgcgcaa cagcgcgggg agcactgcgg
      181 tgggcgcagg tgcggcttaa agaatggatg atgacgactt tggtggcttt gaggctgcag
      241 agacctttga tggtgagcaa ggaggaaacc aagctgtgtc tcctgctgtc ccctgggcca
      301 cctttcctgc agtatccgga gtgcgactct caccagcttc tccggagctt atcctggacc
      361 atgaccactc atctccatcc actggccacc tccctccaga tgctgtcatt tcctcagcag
      421 atgatacgca tgcagatagc agcctcatga gtcagaccat ctccaaggct cagattcagc
      481 agtcagcgca cacacatctg aacatccctc tcttcccact tggtttaacg gatgagccga
      541 gccatggagc acttgccctg gaggatgagc ctgaaggtcc tggagtccac gtgtccaact
      601 ctcagctccg gcaaaaaata tcaagtctgg agactaaact caaagcttct gaagaagaaa
      661 agcagagaat taaaaaggat gtggagtcac tgatggagaa acacagtgtc ctggagaaag
      721 gcttcttgaa ggaaaaggag caggatgctg tatcctttca agccagatac cgtgagcttc
      781 aggaaaaaca taaacaagaa ttggaagaca tgaggaaggc tgggcacgag gcgctgagca
      841 ttatagtgga tgagtacaag gcacttctgc agtcttcagt taagcagcag ctagatgcca
      901 tcgagaagca atatgtgtct gcaatcgaga agcaagctca ccggtgtgag gagctcctgc
      961 atgctcagca tcagaggctt ctagacgtgc tggacactga gaaggaactg ctaagagaga
     1021 aaatccagga agctttgact cagcagtcac aggagcagaa ggaatcactg gaaaagtgcc
     1081 tccaggagga aatgcagagg aacaaagaga cactggagtc tgctgtgaag cttgagaaag
     1141 aagcaatgaa agatgtcatc actaaagcag tgggagaaga aagggaaaat ctggagaaag
     1201 ttcatgccga agaaagggaa ctgtggaaga cagaacatgc aagagatcag gagagggtgg
     1261 cagaggccat ccaggccgct gtgcaggagc agcagaggat gagtcaggaa gctgtcaagg
     1321 ccgcaatcgt agaggagcag aggagaagtg aaaaggccat ggaggaagcc gtaaagagaa
     1381 cgagggacga gctggtggaa tacgtgaggg agcagagaag gctcgatcaa gtcacccgcc
     1441 agcgtagcct gtccagcctg gagctgttcc tctcctgcgc ccagaagcag ctgagtgctc
     1501 taatagctac agagcctgtt gacattgagt agagacacag cagatccatc ggtcgtcaag
     1561 cctgcccact ctgaagctgt ttttctcctg cgcccagaag cagcgagtgc tctaatggcc
     1621 gtagagcctg gtggcattga ataaagggaa cgtgatgggc tgccttgccc tggccattgc
     1681 gtcagtcact agacttctaa gttagatact atgacttaga caagtgctct tgttttctgt
     1741 ttaaacctgg aaagtgcttt tcagttccag aatgagccac agcagtttct acagacccat
     1801 cagcggatct aactctctgc tattttatca tgaggagtga tggaagagtg cctatgaccc
     1861 aaagtcatgg gaaatctgtg tgttatccag agtgcttcag gtaagcctat acagcttctg
     1921 gtaacctgat ggcactgtat ttggtaaagg attaccttgt gaccacctca aggtgatgtg
     1981 tagggagcaa ccactgtgta gccatgcatt tacttgattc taagtagagt gggcagacac
     2041 attggcatgg ccattgttct gactaacctg accacttccc cacacgtgac ctcatatgtt
     2101 tccatagatt taccaaaagt gaacactact agctggccag gtttagagca gctgctctgg
     2161 gtgaactgga atgtgtggcc caggcttgct tcctgccatt cttcaaaggc ttgagatcat
     2221 gtttcataat tgaatatctg gtaaaaatca taacagaaat ctacacatct atttaatcaa
     2281 ataccagaca taagggataa atcgggacgt tcataattca tgagcagtga gctccagcat
     2341 gaaaccatga gtagtttgga cccacgggat gttgtgctca cgtcctgcag tgcttctgct
     2401 tcctgggctt tgtatttttc tgggatttct cagtacaata aaaggaactc caaaaagtta
     2461 aaaaaaaaaa aaaaaaa
//
