LOCUS       NM_025515               1615 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 90B (Ccdc90b),
            transcript variant 1, mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_025515 XM_914108
VERSION     NM_025515.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB617939.1, AI643175.1, AK084673.1 and BC034878.1.
            
            On Jul 8, 2009 this sequence version replaced NM_025515.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK084673.1, AK009370.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-197               BB617939.1         1-197
            198-366             AI643175.1         138-306
            367-1595            AK084673.1         2-1230
            1596-1615           BC034878.1         1424-1443
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 51.51 cM"
     gene            1..1615
                     /gene="Ccdc90b"
                     /gene_synonym="2310015N07Rik"
                     /note="coiled-coil domain containing 90B"
                     /db_xref="GeneID:66365"
                     /db_xref="MGI:MGI:1913615"
     exon            1..487
                     /gene="Ccdc90b"
                     /gene_synonym="2310015N07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             388..1158
                     /gene="Ccdc90b"
                     /gene_synonym="2310015N07Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     coiled-coil domain-containing protein 90B, mitochondrial"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 90B,
                     mitochondrial isoform 1"
                     /protein_id="NP_079791.2"
                     /db_xref="CCDS:CCDS21449.1"
                     /db_xref="GeneID:66365"
                     /db_xref="MGI:MGI:1913615"
                     /translation="MRSRWIWRFLRPDGGGIRWTSTPHGRLSPALRRGFLTTTTKSDY
                     DRRPVDITPLEQRKLTFDTHALVQDLETHGFDKTQAQTIVSVLSTLSNVSLDTIYKEM
                     VTKAQQEITVQQLMAHLDSIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLTNETS
                     RIRADNKLDINLERSRVTDMFTDQEKQLIEATNEFAKKDTQTKSIISETSNKIDTEIA
                     SLKTLMESSKLETIRYLAASVFTCLAIALGFYRFWKEN"
     exon            488..607
                     /gene="Ccdc90b"
                     /gene_synonym="2310015N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            608..711
                     /gene="Ccdc90b"
                     /gene_synonym="2310015N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            712..813
                     /gene="Ccdc90b"
                     /gene_synonym="2310015N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            814..855
                     /gene="Ccdc90b"
                     /gene_synonym="2310015N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            856..927
                     /gene="Ccdc90b"
                     /gene_synonym="2310015N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            928..981
                     /gene="Ccdc90b"
                     /gene_synonym="2310015N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            982..1096
                     /gene="Ccdc90b"
                     /gene_synonym="2310015N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1097..1596
                     /gene="Ccdc90b"
                     /gene_synonym="2310015N07Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1574..1579
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc90b"
                     /gene_synonym="2310015N07Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1596
                     /gene="Ccdc90b"
                     /gene_synonym="2310015N07Rik"
                     /note="major polyA site"
ORIGIN      
        1 aatcctcagc agcaaggact gcgggtccca tgatgctatg ctgctacgct ggattcggtc
       61 tgggaagctt gctgcgggac taactcgccg cccgcaaatg ggcgccagaa ggttctccaa
      121 gaccccgctt tcttagggcg gtaaaggcgg gaagagatgg gaaaagggcg atgtgctagg
      181 gggataagct ctgagtcgtg ttaagtgtgg ctctgtgaag aggcctagct ttgtagaaga
      241 aaaacctctc aagtaggtgc tttggtgaca gaccggaaac tacatttccc agcatcctga
      301 tggtgagagg acttcattgt ccgaaagcct cagcgaaaat caacgcgtat tccgcttccc
      361 cttgctgacc tgcggggctc cgagactatg aggagccgct ggatttggcg gttcctgcgc
      421 cctgacggcg gcggaatccg ctggacttca actcctcatg ggcgtctgtc acccgccctg
      481 cggagagggt tcttgaccac cacaactaag tcagattatg atagaagacc agtggatata
      541 actcctctag aacaaagaaa attaactttt gatacccatg cgttggtgca ggacttggaa
      601 actcacggat ttgacaaaac acaagcacag acaattgtat cagtgctaag tacgctatca
      661 aacgtcagcc tggatactat ctacaaggag atggtgacta aagctcagca ggaaataaca
      721 gtccaacagc taatggctca tttggattcc atcagaaaag acatggtcat cctagagaaa
      781 agtgaatttg caaatctgag agcagagaat gagaaaatga aaattgaact agatcaagtt
      841 aagcagcagc tgactaatga aaccagtcga atcagagcgg acaataagct ggacattaac
      901 ctggaaagga gcagagtgac agacatgttc acagatcaag aaaagcaact tatagaagca
      961 accaatgaat ttgccaaaaa ggatacacaa accaaaagta ttatttcaga gaccagtaat
     1021 aaaattgaca ctgaaatcgc ttccttaaaa acactgatgg agtcgagcaa acttgaaaca
     1081 attcgttatc ttgcagcctc agtgttcact tgcttggcga tagcattggg gttttatagg
     1141 ttctggaagg agaactgacg atgatgctgc cgctgctgct gccgccgctg ctgccgctgc
     1201 tgctcactcc atagaatgta ctcactacaa actcttcaaa gggcttgtgg actaaatgaa
     1261 gtgtttggta ttttattctt atgttgtatg tctttatgtt gaaaagctgt cactcaaacc
     1321 tggcttgata tagaagtcct tatcctctga taactatagc aataaaaagt tttgcatttg
     1381 agctttgtaa atgaagttgg attttatatc agattacatt tttgaaaaca attctgtagt
     1441 ctatacactt actggatttt actttcttgg ttattattgc aattagattt ttatataaaa
     1501 taaaatacta taacaaagtt ggttgatttt tcaaagtgac ttcctatgta agtggcgatt
     1561 ttttgtagtg aataataaat tttaaaataa tgtgtaaaaa aaaaaaaaaa aaaaa
//
