LOCUS       NM_027298               2371 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 89 (Ccdc89), mRNA.
ACCESSION   NM_027298 XM_133591 XM_914003
VERSION     NM_027298.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2371)
  AUTHORS   Van Wayenbergh,R., Taelman,V., Pichon,B., Fischer,A., Kricha,S.,
            Gessler,M., Christophe,D. and Bellefroid,E.J.
  TITLE     Identification of BOIP, a novel cDNA highly expressed during
            spermatogenesis that encodes a protein interacting with the orange
            domain of the hairy-related transcription factor HRT1/Hey1 in
            Xenopus and mouse
  JOURNAL   Dev Dyn 228 (4), 716-725 (2003)
   PUBMED   14648848
  REMARK    GeneRIF: BOIP is a novel cDNA highly expressed during
            spermatogenesis that encodes a protein interacting with the orange
            domain of the hairy-related transcription factor HRT1/Hey1 in
            Xenopus and mouse [BOIP]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BG081193.2, BC060150.1 and AC100322.8.
            
            On or before Apr 9, 2009 this sequence version replaced
            XM_914003.2, XM_133591.7.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC060150.1, SRR7652917.1116162.1
                                        [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-265               BG081193.2         1-265
            266-946             BC060150.1         1-681
            947-951             AC100322.8         88801-88805
            952-2371            BC060150.1         686-2105
FEATURES             Location/Qualifiers
     source          1..2371
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 50.58 cM"
     gene            1..2371
                     /gene="Ccdc89"
                     /gene_synonym="1700019B01Rik; BOIP"
                     /note="coiled-coil domain containing 89"
                     /db_xref="GeneID:70054"
                     /db_xref="MGI:MGI:1917304"
     exon            1..2353
                     /gene="Ccdc89"
                     /gene_synonym="1700019B01Rik; BOIP"
                     /inference="alignment:Splign:2.1.0"
     CDS             273..1385
                     /gene="Ccdc89"
                     /gene_synonym="1700019B01Rik; BOIP"
                     /note="bc8 orange-interacting protein"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 89"
                     /protein_id="NP_081574.1"
                     /db_xref="CCDS:CCDS52308.1"
                     /db_xref="GeneID:70054"
                     /db_xref="MGI:MGI:1917304"
                     /translation="MPQEEKTLRMDTPPPDEILGKQNENLQNQDEELGFKEMDGLREA
                     LANLRGLSEEEKGEKAMLRSRIQEQSQLICILKRRSDEALERCQILELLNSELEEKRL
                     QEMEKLKAQSEHIQKLENHFMILASNHEQMIRFKDAHKSENVKLKEENARLRQENNSL
                     FSQALKDQEAKVLELTTLNKALVEELEVLKQRCAHEASQAQAREEELLGLQNQQACDH
                     AKETEELRSQLQSIKQQHQQATEQMGKEQEANLNLNQELQARLQTVLREKEELLQLSM
                     ERGKVLQNKQAEIRQLEEKLETAAMAKKHALERFEQEAVAVDSNLRVRELQRRVDGIQ
                     KAYDELRLQSEAFKKHSLDLLSKERELNAKLRHLFP"
     polyA_site      1506
                     /gene="Ccdc89"
                     /gene_synonym="1700019B01Rik; BOIP"
                     /note="major polyA site"
     regulatory      2326..2331
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc89"
                     /gene_synonym="1700019B01Rik; BOIP"
                     /note="hexamer: AGTAAA"
     polyA_site      2344
                     /gene="Ccdc89"
                     /gene_synonym="1700019B01Rik; BOIP"
ORIGIN      
        1 gctgactttg tggaaggctt atgtctttgc ggcacaggcg ggacagtggc agtgaactaa
       61 gaactgtgat tggtttaaac gacatgcgta gcctgaccag attggccctg aactccccct
      121 attacctcac tgcgttctgc aggcctgtcc accaattata ggactcctta ctggaaaaac
      181 caaccgctgg agagtgccaa gcgtccatag caacgcccct ttgaaatcag aagggggaaa
      241 gactgaagtc agttctcccg cagagcgcgt ctatgccgca ggaggagaag actcttagga
      301 tggatacccc accccccgac gagatcttag gaaaacaaaa cgaaaacctg caaaaccagg
      361 atgaggaatt ggggtttaag gaaatggacg gtctgagaga agctttggcc aaccttaggg
      421 gactgtctga ggaggagaag ggcgagaagg caatgcttcg ctcccgcatc caagagcaat
      481 cccagctcat ctgcatcctg aaacgcagat ccgacgaggc cctggaacgc tgccagatct
      541 tagaactgct caactcggag ctggaggaga agaggctgca ggagatggag aagttgaagg
      601 cccagagtga gcacatccaa aagctggaga atcacttcat gatcctggca tccaaccacg
      661 agcagatgat tcgcttcaag gatgcgcaca agagtgaaaa cgtcaagctg aaagaggaga
      721 atgcgaggct gaggcaggaa aacaacagcc tcttcagcca ggctctgaaa gaccaggagg
      781 ctaaggtact ggagctcact acactcaaca aggccctggt ggaggaactg gaggtcttga
      841 aacagagatg cgctcacgaa gctagccagg ctcaggcccg agaggaggag ctgctgggcc
      901 tgcagaacca gcaagcctgt gaccatgcca aggagaccga ggagctgcgc agccagctgc
      961 agagcatcaa acagcaacac cagcaggcca cggaacagat gggaaaggag caagaggcta
     1021 atctcaacct gaaccaggag ctgcaggcca ggctgcagac tgtcctgcga gagaaagagg
     1081 agctgctgca gctgtccatg gagagaggca aggtgcttca gaacaaacag gctgagatcc
     1141 gccagcttga ggagaagttg gagacagcag ccatggctaa gaagcatgcg ctggaacgct
     1201 ttgagcaaga ggcagtggcc gttgatagca acctgagagt tcgcgagctt cagcgcaggg
     1261 tagatgggat ccagaaagct tatgatgagc tgcgtctgca atcagaagcc ttcaaaaagc
     1321 acagcctgga tctcttaagc aaagagagag agcttaatgc caaactccgc catctctttc
     1381 cataagagaa attgtgcttc ctgtggtctc cagtcaatat ttcaagtcca tgtgccttag
     1441 atttatggca aaagcaaaga taattcattt actatacttt taagtacaaa aactacttta
     1501 ctatgacgtt gttgttgtta ctgttgcaaa gttaatgtta attttcagtt acacccacta
     1561 gaacacattt aagattaacc agtgttcccc gctgtacctt caaaggtttc ttaagattat
     1621 ccgtatcttc tacctcataa ctcactcatt ctcagcctca gacatcttcc tatagatagc
     1681 ttgaaaagat gtatgattta atggatccta aaataaacat gctatcgtgg gggaaaaaag
     1741 ggaagacaca gccccattag ccattgcaga acaataggct tacaacactg taggtgggcg
     1801 tataaacaaa cagaagtcag catggtagga caaaaacttc tcagcaaaaa ggctctaatt
     1861 ggatctgatt ttgtattagc ttggcaaagc aaaagtttga tcattcactt gtgtgccaaa
     1921 gtgtaaaagc tagctctgat acattcattc tattgagcat taagattcaa gttcgttaca
     1981 tcaaccaatt ctaatatttt ctgcaagtct atcttacttc cactttcttg gtttttctcc
     2041 ttaataactg agaggattta gacattctct attgagacta ttttacaata tgctaatagg
     2101 caaaaaaatt acctcaattt aaggtaacta gtcatagcag attttggtag cagctcataa
     2161 attgttttct gtttctgtca atacattttg tgtaattttg tgttttaaaa gtccaagctg
     2221 aatgcgtata tgtgtactta tggcattctt tgtaggaata attcagtttt gtaaaagtag
     2281 ctatttaaca gagttaaatg tagattaatg taaagttcct aaggaagtaa agttatcaag
     2341 ttaattccta gaaaaaaaaa aaaaaaaaaa a
//
