LOCUS       NM_198616               4401 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus coiled-coil domain containing 85B (Ccdc85b),
            transcript variant 1, mRNA.
ACCESSION   NM_198616 XM_140559
VERSION     NM_198616.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4401)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4401)
  AUTHORS   Li,S.S., Qu,Z., Haas,M., Ngo,L., Heo,Y.J., Kang,H.J., Britto,J.M.,
            Cullen,H.D., Vanyai,H.K., Tan,S.S., Chan-Ling,T., Gunnersen,J.M.
            and Heng,J.I.
  TITLE     The HSA21 gene EURL/C21ORF91 controls neurogenesis within the
            cerebral cortex and is implicated in the pathogenesis of Down
            Syndrome
  JOURNAL   Sci Rep 6, 29514 (2016)
   PUBMED   27404227
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4401)
  AUTHORS   Liu,X.F., Bera,T.K., Kahue,C., Escobar,T., Fei,Z., Raciti,G.A. and
            Pastan,I.
  TITLE     ANKRD26 and its interacting partners TRIO, GPS2, HMMR and DIPA
            regulate adipogenesis in 3T3-L1 cells
  JOURNAL   PLoS One 7 (5), e38130 (2012)
   PUBMED   22666460
REFERENCE   4  (bases 1 to 4401)
  AUTHORS   Bezy,O., Elabd,C., Cochet,O., Petersen,R.K., Kristiansen,K.,
            Dani,C., Ailhaud,G. and Amri,E.Z.
  TITLE     Delta-interacting protein A, a new inhibitory partner of
            CCAAT/enhancer-binding protein beta, implicated in adipocyte
            differentiation
  JOURNAL   J Biol Chem 280 (12), 11432-11438 (2005)
   PUBMED   15644333
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY124251.1, BC058411.1, BC094592.1 and CK337075.1.
            
            On Aug 10, 2011 this sequence version replaced NM_198616.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript is intronless :: AK140354.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-14                BY124251.1         1-14
            15-1025             BC058411.1         1-1011
            1026-4379           BC094592.1         812-4165
            4380-4401           CK337075.1         486-507
FEATURES             Location/Qualifiers
     source          1..4401
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 4.33 cM"
     gene            1..4401
                     /gene="Ccdc85b"
                     /note="coiled-coil domain containing 85B"
                     /db_xref="GeneID:240514"
                     /db_xref="MGI:MGI:2147607"
     exon            1..4401
                     /gene="Ccdc85b"
                     /inference="alignment:Splign:2.1.0"
     CDS             167..775
                     /gene="Ccdc85b"
                     /note="isoform 1 is encoded by transcript variant 1;
                     coiled-coil domain-containing protein 85B;
                     delta-interacting protein A homolog; hepatitis delta
                     antigen-interacting protein A homolog"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 85B
                     isoform 1"
                     /protein_id="NP_941018.1"
                     /db_xref="CCDS:CCDS50357.1"
                     /db_xref="GeneID:240514"
                     /db_xref="MGI:MGI:2147607"
                     /translation="MEAEAGGLEELTDEEMAALGKEELVRRLRREEAARLAALVQRGR
                     LMQEVNRQLQGHLGEIRELKQLNRRLQAENRELRDLCCFLDSERQRGRRAARQWQLFG
                     TQASRAVREDLGGCWQKLAELEGRQEELLRENLALKELCLALGEEWGPRGGPGGAVGS
                     GAGPTPELALPPCGPRDLGDGSSSTGSVGSPDQLPLACSPDD"
     regulatory      997..1002
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc85b"
                     /note="hexamer: AATAAA"
     polyA_site      1018
                     /gene="Ccdc85b"
                     /note="major polyA site"
     regulatory      4358..4363
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc85b"
                     /note="hexamer: ATTAAA"
     polyA_site      4379
                     /gene="Ccdc85b"
ORIGIN      
        1 tgcctcgtgc ccaccccagg gtagctgctg cagcctacgc tgcctcttcc actgcctacg
       61 gtcctcggag ccagagcccg ggtcggagcc tgagaggcaa ccggcccgag gaggggctcc
      121 agagcctcgg ccgtgggcgg gcgatgctgc agctgcctga tcaactatgg aggccgaagc
      181 aggcggcctg gaggagctga cggacgagga gatggcggcg ctgggtaagg aggagctggt
      241 gcggcgcctg cggcgggagg aggcggcgcg cctggcagcg ctagtgcagc gcggccgcct
      301 gatgcaggag gtgaatcggc agctgcaggg tcacctgggc gagatccgtg agctcaaaca
      361 gctcaaccgg cgcctgcagg cggagaaccg ggagctgcgc gacctctgct gctttctgga
      421 ctcggagcgc caacgaggac ggcgtgcggc gcgccagtgg cagctctttg ggacccaagc
      481 atcccgggcg gtgcgcgagg acctgggtgg ctgttggcag aagctagcgg agctggaagg
      541 ccgccaggag gagctgctgc gggaaaatct ggcccttaag gagctttgct tagcactggg
      601 cgaagagtgg ggcccccgcg gtggccccgg cggcgcagtg ggctcaggtg ctgggcccac
      661 acccgagctc gccctgccac cgtgcgggcc ccgcgaccta ggcgatggaa gttccagcac
      721 tggcagtgtg ggcagcccgg atcagttgcc cctagcctgc tcccctgatg actgagggcg
      781 ccgcattttc cacgccaatg cctgcctgga ttgctccctg agctcgggga atgctgtgga
      841 cctccagacc tggtcgtagc ttcggctgag caccagggcg ctggaatgga ctggaaaagc
      901 cctggcactg aggagggctc cttgctcttg ctggcagagc agcaggggaa atggaggctg
      961 aagtggaggg acttgctgtg tggttgggtg gggactaata aactgggaag gaagcagagc
     1021 ccgaagcctg gccagcttgt gtctagaact cgccggggtt gggaagaggg cgtaaaccca
     1081 gagatgcagt gcagttctca tccggaggaa ctgcagagct agggctgact ccctattacc
     1141 tgggattggg gtgggatttg agacggtggt agaccactaa ctcccccgat gggcgccaag
     1201 acaggctgaa atccggccgc tgtagtggct ccagctccct tccaggctcc ttcctgtcta
     1261 aaacaatggg acaggaagca ggtgttgggg gcctaaagcc cactgaaccg cctgcatgga
     1321 tggtggaagg atataccacc ggccttccct gccccccccc cagtccttaa gacaggagca
     1381 gtgtgggttc ccatggggaa aataattgat aatcttcttt gcttgcactc cagagcattc
     1441 ttagtctctc agtataggag acaaggaaga gcagagggtc gccccattct tcaggtgaga
     1501 atatggaagt ccaaaaacat atggtagttt cttcaaggtc aatgctgaga ctggaacctg
     1561 gaactcctgt tccaaatggt ctcctttagc ctctggatcc aacatgacaa cccagactag
     1621 agcttcaagc cttttattcc attttggaag gtttgtataa aaatagtctc tttaggaaaa
     1681 taaatagcag ctgcccttgc ggtggaggct cggataccct gaagctaagc gcttctcaga
     1741 gctagggagt gcagctccgc tcctcacaga agcccctggc gcctcctgcg ttgtgccatt
     1801 caggaggagc ctgcaggatg tccggtgctg ctggctgttg atgctgtgtg agttagtgtt
     1861 ctaggctagt caaagggcac cttctgtcta ggtgtagagt aggctggata acatgaagaa
     1921 agtgacgtgg tgtgggaaag tggtctgcaa ggggtaaggg tgtcaaagga cccctgggga
     1981 tctacaaagt ctgggctgcc aggcgttctc tggcagaggg aacatatttt cctctaattt
     2041 tgtgcaaatt atgataggcc agctctagaa aaacagtgag cagctttggg gatcccctcc
     2101 aagctggctc tacatcaaag cataatgtgt ttgttctagt cggaagagat aaaagatctg
     2161 ctggtttggg gcaagggtat ggtccaggcc tgctggatca atgggagaaa ggggatggct
     2221 tggagtagca ccagcaaggg atgtggctgg gtgcctcaca aagccaggag tgtaggagag
     2281 cccagggggt cggaggaggg gtcgccactg ctgctgctac tctttcggtg agcggaggag
     2341 caaggttctg gtgtgctagg ataggtgaaa accagactcg gagtaaaagg agtcagagag
     2401 ggtgtggtca tgagcgtggg ggtatgcagt gcttccggtt caagtacggg tcctggagaa
     2461 agggagatgc aaggcactgg gcggccgggg gctggtgggc tgctagcacc gctggtgctg
     2521 ccagaaccac ctgggtcctt cttgtctcct tctgggattt tgcagatggg gcgatgggct
     2581 tccagcacca gctcaaggcg ttccttctgc ttctgcagct cttcaatctc tcgctgcagc
     2641 cccgatttct catcctccaa tttgtcggtc tcctttacag gattagcaga aagataggaa
     2701 aatgaaggct aaagatcccc aagcctcagg ctggagtagg gactgtgcct gtcatcccca
     2761 acaagtctgg actgcaactc cctcccgtga gcctctggga gaaaatggcc atgactccca
     2821 tcagacgggg gcatcttagg agaattgctg cctaccatct tcgactctgc ctcgaagccc
     2881 gacaaacaat atttaagcca ctttccctta tcctttttcc aggacttccc cacaggcagg
     2941 gaggatgaca gagtcctgag gagtaatttt gggtcttttg tgttcttggg agccgagacc
     3001 cctcttgggg ctctgtgggt ccgggcctgg ggatgatgct caccgcctgc aggaagtctg
     3061 tcagctcctt tcttcggttt ctgcacttag cagctgctag cttgttccgc tcgcgtctca
     3121 ccctgcggcg ctcttcctcc tctgggctga tctaggttgg gatagaagaa gggagacaat
     3181 gaggctgact ctgagccacc agctgccctg agctggtcat ccagctttcc ttcagtctgt
     3241 agtctaggtg ccaccaccca acactccaca gttgcttctc tgtaccggac gcttgtcatc
     3301 tcattggtga catttccagc tcacacacac ctagctttac tgctggtttc tttcctgaaa
     3361 tgctttccct ctctgtaaac tttgatcttc ctcccttccg catcttagga ctggactaag
     3421 atgttgggac cccaggaagc cttttcattt ctcaggcaga agtagccttc tctcctgagt
     3481 gtatgagaca tgattatctc ttttcacagg actctcagcc tcctcatctg tggaagatgg
     3541 gatttcttcc cccaggagct gtgaattgta gaaggtgctc ttgagtgcca aaagctactg
     3601 ggaatcaatc tactatgcca acaaagccct ttgtaggact tttcttttgc ttagtgctag
     3661 ggatcaaacc catggcttgg tacatgctag ctcggcaaat gctctaccac tgagttacac
     3721 cccttcacca gccctttcgt agattccttt ttctgctttt tgtagttttg tttctttgta
     3781 ttttagacag aatctctgag tagccctgcc tggccttgaa cttgatttat agaccaggct
     3841 ggcctggaac tcacagacct catctggctt gttttgtctt tttttttttt ttttaagatt
     3901 tatttatttt tattatatgt aagtacactg tagttgtttt cagacactcc agaagaggga
     3961 ctcagatttc gttacagatg gttgtgagcc accatgtggt tgctgggatt tgaacttcgg
     4021 acctgcagaa gagcagttgg gtgctcttac ccactgagcc atctaaccaa cccccttgtt
     4081 ttgtcttttt aaaagagaca aagtctcatg tgtcccaggc tggcctttag ctcagtgtat
     4141 aggcaagacc ggcctgaaac ccctgattct ttggcttcca cctctagagt aataggattg
     4201 cagactgtat cagcatccct tccagcttcc ctacatagat tctttatgtt gctgttgttt
     4261 ttaaagacag ggttcatctt catagttcta gctgtcatgg aattcactct gtaggctggc
     4321 ctcaaacttc acctgcctct gcctcccaag tactgtgatt aaaggcatgt gccacactat
     4381 gcctggctag agtcatatat t
//
