LOCUS       NM_183293               1399 bp    mRNA    linear   ROD 31-JUL-2024
DEFINITION  Mus musculus coiled-coil domain containing 83 (Ccdc83), transcript
            variant 1, mRNA.
ACCESSION   NM_183293
VERSION     NM_183293.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1399)
  AUTHORS   Skarnes,W.C., Rosen,B., West,A.P., Koutsourakis,M., Bushell,W.,
            Iyer,V., Mujica,A.O., Thomas,M., Harrow,J., Cox,T., Jackson,D.,
            Severin,J., Biggs,P., Fu,J., Nefedov,M., de Jong,P.J., Stewart,A.F.
            and Bradley,A.
  TITLE     A conditional knockout resource for the genome-wide study of mouse
            gene function
  JOURNAL   Nature 474 (7351), 337-342 (2011)
   PUBMED   21677750
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK016114.1, AC158781.4 and AK016535.1.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK016535.1, SRR5189685.58548.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-12                AK016114.1         2-13
            13-13               AC158781.4         105693-105693       c
            14-685              AK016114.1         15-686
            686-686             AC158781.4         80567-80567         c
            687-803             AK016114.1         688-804
            804-820             AC158781.4         70169-70185         c
            821-928             AK016535.1         807-914
            929-930             AC158781.4         68707-68708         c
            931-972             AK016535.1         917-958
            973-973             AC158781.4         68664-68664         c
            974-1036            AK016535.1         960-1022
            1037-1037           AC158781.4         67029-67029         c
            1038-1239           AK016535.1         1023-1224
            1240-1240           AC158781.4         64310-64310         c
            1241-1399           AK016535.1         1226-1384
FEATURES             Location/Qualifiers
     source          1..1399
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 50.48 cM"
     gene            1..1399
                     /gene="Ccdc83"
                     /gene_synonym="4930549K11Rik; 4930554C01Rik;
                     4932423M01Rik"
                     /note="coiled-coil domain containing 83"
                     /db_xref="GeneID:75338"
                     /db_xref="MGI:MGI:1918255"
     exon            1..109
                     /gene="Ccdc83"
                     /gene_synonym="4930549K11Rik; 4930554C01Rik;
                     4932423M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            110..226
                     /gene="Ccdc83"
                     /gene_synonym="4930549K11Rik; 4930554C01Rik;
                     4932423M01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             132..1358
                     /gene="Ccdc83"
                     /gene_synonym="4930549K11Rik; 4930554C01Rik;
                     4932423M01Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     coiled-coil domain-containing protein 83"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 83 isoform
                     1"
                     /protein_id="NP_899116.1"
                     /db_xref="CCDS:CCDS57561.1"
                     /db_xref="GeneID:75338"
                     /db_xref="MGI:MGI:1918255"
                     /translation="MDSSAKGSKKDAPDGPPKDSKLPVSEALLDYHREIKENAVERFM
                     FHIKKLREKNQKYQERNRRLKEEQNWHIKNLIKELKEKNLDEAPIVTREEVEEAMKEK
                     WEFERQQEASLKEMRIQINEAEKLFLEKLSEKEYWEEYKNVGSAQHAQLIVSLQNDID
                     TVKENAEKMSEQYKVTLEDEKKRISRETMIQLKQRKEWATQHAVRFIDKNNYREIWEN
                     DWLKKEITIHKKEVEELEASIHLLEEENLLLIDQLINCRLVDLKIPKKLYITQAAGLQ
                     VTPEDESLNLAEADTEENLQLPSKEGSEDMLDLLLGSNHGTSSPEIQPKKTVSKDGSN
                     PEMESSITQHLLHEDEQDFKEYVNLGPLALKLMTVQGKKMPIHFQEKEIPAEVYEDMQ
                     RNPESHITHKLMKTFI"
     exon            227..311
                     /gene="Ccdc83"
                     /gene_synonym="4930549K11Rik; 4930554C01Rik;
                     4932423M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            312..474
                     /gene="Ccdc83"
                     /gene_synonym="4930549K11Rik; 4930554C01Rik;
                     4932423M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            475..642
                     /gene="Ccdc83"
                     /gene_synonym="4930549K11Rik; 4930554C01Rik;
                     4932423M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            643..734
                     /gene="Ccdc83"
                     /gene_synonym="4930549K11Rik; 4930554C01Rik;
                     4932423M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            735..803
                     /gene="Ccdc83"
                     /gene_synonym="4930549K11Rik; 4930554C01Rik;
                     4932423M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            804..925
                     /gene="Ccdc83"
                     /gene_synonym="4930549K11Rik; 4930554C01Rik;
                     4932423M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            926..1005
                     /gene="Ccdc83"
                     /gene_synonym="4930549K11Rik; 4930554C01Rik;
                     4932423M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1006..1193
                     /gene="Ccdc83"
                     /gene_synonym="4930549K11Rik; 4930554C01Rik;
                     4932423M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1194..1399
                     /gene="Ccdc83"
                     /gene_synonym="4930549K11Rik; 4930554C01Rik;
                     4932423M01Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttcctgagc ggttaagaac tgttgagaag ggttctccaa gccgtgcccc tctttcacca
       61 ctctggagac agggatacct gcctggtttt agccgcccta aacttaaagg tcttagtggc
      121 caaccagagc catggacagc tcggccaaag gaagcaaaaa ggatgcccct gatggaccac
      181 caaaagactc gaagctgcct gtcagtgagg cccttctgga ctatcatcgt gaaataaagg
      241 agaatgcggt ggagcgattc atgttccata tcaagaagct gagggaaaag aatcaaaagt
      301 accaagagag gaatagacgc ttgaaggagg aacagaattg gcacataaag aatcttataa
      361 aagaactgaa agagaagaat ttggatgagg caccaatagt aacaagagag gaagtggagg
      421 aggcaatgaa ggaaaaatgg gagtttgaaa gacaacagga ggcaagcttg aaagaaatgc
      481 gcatacaaat aaatgaggct gagaagctat ttcttgaaaa actcagtgaa aaggaatatt
      541 gggaagagta caagaatgta gggagcgctc agcacgctca actcattgtt tccttacaaa
      601 atgacatcga cacagttaaa gaaaatgcag agaaaatgtc agaacagtat aaagtcaccc
      661 tggaagatga aaaaaagagg atatccagag aaacaatgat ccaactgaaa cagaggaaag
      721 aatgggccac acagcacgct gtaaggttca ttgacaagaa caactatcga gagatctggg
      781 aaaatgactg gctaaaaaaa gaaatcacaa ttcacaagaa ggaagttgaa gaactggaag
      841 cttctatcca tctactagaa gaggaaaatt tgctgcttat tgaccagtta attaactgca
      901 gacttgtgga tctcaaaata cccaagaaac tgtacattac tcaagcagct gggctacaag
      961 tgacacccga agacgaatct ttaaatttgg cagaagcaga cacagaggag aatttgcagc
     1021 tgccctccaa agaggggagt gaagacatgt tggacctatt actggggagc aaccatggca
     1081 ctagcagccc agagattcag cccaagaaga cagtgagtaa agacggctcc aacccagaga
     1141 tggagagctc catcacccag cacttactgc atgaagatga acaggatttc aaggaatacg
     1201 taaacttggg cccactggca ttgaagctaa tgactgtaca gggcaagaaa atgcccattc
     1261 attttcaaga aaaggaaatt ccagctgaag tttatgaaga catgcagagg aaccctgaga
     1321 gccatatcac acataagctg atgaagacat ttatttaggc ctgggagcca cacctttctt
     1381 tataaattct ttgagaatt
//
