LOCUS       NM_133744               3074 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 71 (Ccdc71), transcript
            variant 2, mRNA.
ACCESSION   NM_133744
VERSION     NM_133744.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3074)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3074)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC161260.2.
            
            On Mar 13, 2020 this sequence version replaced NM_133744.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK149878.1, AK086560.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-65                AC161260.2         9400-9464           c
            66-3074             AC161260.2         4071-7079           c
FEATURES             Location/Qualifiers
     source          1..3074
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 59.38 cM"
     gene            1..3074
                     /gene="Ccdc71"
                     /gene_synonym="2600016J21Rik"
                     /note="coiled-coil domain containing 71"
                     /db_xref="GeneID:72454"
                     /db_xref="MGI:MGI:1919704"
     exon            1..65
                     /gene="Ccdc71"
                     /gene_synonym="2600016J21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            66..3074
                     /gene="Ccdc71"
                     /gene_synonym="2600016J21Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             118..1419
                     /gene="Ccdc71"
                     /gene_synonym="2600016J21Rik"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 71"
                     /protein_id="NP_598505.1"
                     /db_xref="CCDS:CCDS23527.1"
                     /db_xref="GeneID:72454"
                     /db_xref="MGI:MGI:1919704"
                     /translation="MSMVVQPVEEKAVHSWSRISTAGKKALEEALLVFNPMSQDLSAT
                     EAQLVAFLQGLRDDGFQPTILRSGDVYGYSSCTASPPSQTKLQARTINPPATSLPKTA
                     VSVPAGRTTLLPVPLSGRLAKGSTAALAKHATTNLLLSSLKQSSASNSSGTTVGFPAH
                     LYPGVYPAMRLSVVLEALVPLKTPCLDVKHGAQSLQLSLAKSPLKVRKASGNPKSKAP
                     RKITSKGLKHLTSKGPGAGLRRGAGTQSNGAQRKGCSALGPKTVQAQASQTLIKAARA
                     HASVAQTQTKTVRVRAKAKQAKPKAARAKAKAAVVRDKAKDKVIQAKAKAAQTKHKGK
                     PKGSVQTRTGRANRKNSSETVGRKRKKAEETKGLPPKKRARCVPRPPKVWLGPGTAKP
                     RKSQTIKVDRKCSDDEVRQCAQQILRVNLSPVVWLQPLLPF"
     polyA_site      1683
                     /gene="Ccdc71"
                     /gene_synonym="2600016J21Rik"
                     /note="major polyA site"
     regulatory      2923..2928
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc71"
                     /gene_synonym="2600016J21Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2946
                     /gene="Ccdc71"
                     /gene_synonym="2600016J21Rik"
     regulatory      3049..3054
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc71"
                     /gene_synonym="2600016J21Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3074
                     /gene="Ccdc71"
                     /gene_synonym="2600016J21Rik"
ORIGIN      
        1 aggcggccat gttggagcgg cggaggcggc gcagaggtgc gtcctgggtc cccgcggcgg
       61 cgccggtgcc aagtgctggt ttgtggatac ccaggcaagc ctgcagtgcc caatgccatg
      121 agcatggtag tgcagcctgt ggaggagaaa gctgtgcact cgtggtcacg tatctccacg
      181 gcagggaaga aagccctgga agaggccctg cttgtgttta atcccatgag ccaggatctc
      241 agtgccacag aggcccagct cgtggccttc ctccagggtc tgcgagatga tggcttccaa
      301 ccgaccattc ttcgaagtgg agatgtctat ggttatagtt catgcacagc cagccccccc
      361 agccagacaa agctacaagc tcgtaccatc aacccacctg ccacgtcact tcccaaaact
      421 gctgtgtcag tccctgcagg ccggaccacc ttgctccctg tgccactgtc tggcaggctg
      481 gctaaagggt ccacagcagc cctagccaag catgccacca ctaacctgct gctgagctcc
      541 ctgaagcagt cgagtgccag caacagcagt ggtacaacag taggcttccc tgcccacctc
      601 tatccaggcg tctacccagc catgcggctc tctgtggtcc ttgaagcact ggtcccactc
      661 aagactccct gcttggacgt taagcacggg gcacagtcac tgcagctgtc acttgcaaag
      721 tctcccctga aagtgaggaa agcttcgggg aacccaaagt ccaaagcacc ccgaaaaatc
      781 acaagcaagg gcctcaaaca tctgactagc aaaggccctg gggctggtct ccgacgaggc
      841 gctggaaccc aaagcaacgg cgcccaaagg aaagggtgct ctgccttggg ccccaaaact
      901 gtccaggccc aggcatctca aaccctgatc aaagctgctc gcgctcatgc cagtgtggct
      961 caaacccaga ccaagacagt aagggtcagg gccaaagcaa agcaggccaa gcccaaggca
     1021 gccagagcca aagccaaggc cgctgtggtg agggacaagg caaaagacaa ggtaatccag
     1081 gccaaggcca aagcagccca gaccaagcac aagggaaagc caaagggatc ggttcagacc
     1141 agaactggaa gggcaaaccg gaaaaacagc tctgagactg tggggcggaa gaggaagaag
     1201 gccgaggaga ccaagggtct tcctcctaag aagagagcac ggtgtgtgcc ccgacctcct
     1261 aaggtgtggc tggggcctgg aacggcaaaa cctcgaaagt cccagaccat aaaggtagac
     1321 aggaagtgct cagatgacga ggtccgacag tgtgcccagc agatcctccg tgtgaatctc
     1381 tctcccgtgg tatggctcca gcccttgcta ccattttgat cccatactca acatcccaag
     1441 cccttgcagc agtacttggg aaaacagcgg agctgtctgt gtgaccagtg cattgtgtag
     1501 tgctcaggac cctgctgctt cccggatcct ggggacctcg ggactggtca ccaacatcct
     1561 ttcagaaacg gaggatttgg gtggggtggt ttgcgggagg ggtgttctca tggctcagtg
     1621 cactgtgact tgttcttcag attgtatgtc cacgttcatt ctatcatgtt ttataccttt
     1681 ccaccttgcg gtctccttgc tcaccctcca tggtcttatt tatcaaaaaa aaaaaaattt
     1741 tttttttggt gtgtgggagt tagtggcaag aggctatcag gagtctagga gcaggcttgg
     1801 agagagtgcc ctggtagctt gaagcaggtc atcaatttaa atgatagggt gacattaaag
     1861 tgatgttctc ggggttctgg agagatatgg ggaaaatcag gtgctggttt ctgggaatgt
     1921 gttgagagag atcctgaggg gagggttaga gccactacct ctcctcgaat gtcccagttt
     1981 tgaaccagat gggcctgatt caaaattgtt tgcagctcag tgggaaatcc ggcaccaagc
     2041 aggtttttag gccagggaaa gaagtctttg tggtgttgct ctccggaggc ccagctttaa
     2101 ggttttgcct gagcttctct tggcggagga aacatactta agaggcttga agtgcctctt
     2161 ttctgcttta cagggactag cctcaatttt cccaattggt gacaagaggc taggctctga
     2221 atctggacca caaaaccttc cttactgtcc agagcatttt ctctgtggta acgggtgatg
     2281 gaaccaggga ctgactcatt tccacaggct ccatctttct ccggggtcca gcctcaccat
     2341 gtcccctaac gtgacccgta cacattggac attggtagct tctgctttgg agaagctggg
     2401 ccctcagtgg aagcagctgc tcaggctgga aggtagtgct gaggtggaga acctgcaatc
     2461 cttgtacttg gggatttgac tgagtttgag gtcagtatca gccacatagt gagaccctct
     2521 ctgcctgtct tttgtttgtc ttttgagacc gggtttctct gtgtagcccc agctgtccta
     2581 gaacttaact ttgtagtcca ggctggcctc agactcagag atctgtctgc ctctggccaa
     2641 tcacgggaat taaaggcatg ggccaccaga ccaagccagg cgaatgaatg gcttaactct
     2701 actggttaag aggatttagc tgctttccca gaagaccctt ttgcgactcc cacaaaaggc
     2761 agctcacaga cccctgtatc catctccagg gatctggcat ccatgatcac aggcagacac
     2821 ctgtatccat ctccagggat ctcgcatcca tgatcacagg cagacacctg tatccatctc
     2881 cagggatctc acatccatga tcacaggcag acagacaata caaataaatc ttttaaaaaa
     2941 gaccaatggc acagctgaat taagcatcag ttctttgaga aaaggtggtg ttgagaatct
     3001 tgaacttcag tgatgttgat aagcaaaaga atcgtgtgaa ataccttaaa taaatactta
     3061 ttggccaggc tgga
//
