LOCUS       NM_001033314            2011 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 61 (Ccdc61), transcript
            variant 1, mRNA.
ACCESSION   NM_001033314 XM_133236
VERSION     NM_001033314.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC153651.4.
            
            On Mar 29, 2023 this sequence version replaced NM_001033314.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK146297.1, SRR17784649.475887.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-272               AC153651.4         24519-24790
            273-430             AC153651.4         30984-31141
            431-513             AC153651.4         31371-31453
            514-671             AC153651.4         33847-34004
            672-827             AC153651.4         35210-35365
            828-1038            AC153651.4         40778-40988
            1039-1121           AC153651.4         41074-41156
            1122-1285           AC153651.4         41575-41738
            1286-1361           AC153651.4         41850-41925
            1362-1507           AC153651.4         42340-42485
            1508-1586           AC153651.4         42571-42649
            1587-1647           AC153651.4         42824-42884
            1648-1720           AC153651.4         43536-43608
            1721-2011           AC153651.4         43750-44040
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 9.38 cM"
     gene            1..2011
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /note="coiled-coil domain containing 61"
                     /db_xref="GeneID:232933"
                     /db_xref="MGI:MGI:2685005"
     exon            1..272
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /inference="alignment:Splign:2.1.0"
     exon            273..430
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /inference="alignment:Splign:2.1.0"
     exon            431..513
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /inference="alignment:Splign:2.1.0"
     exon            514..671
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /inference="alignment:Splign:2.1.0"
     exon            672..827
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /inference="alignment:Splign:2.1.0"
     exon            828..1038
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /inference="alignment:Splign:2.1.0"
     exon            1039..1121
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /inference="alignment:Splign:2.1.0"
     exon            1122..1285
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /inference="alignment:Splign:2.1.0"
     exon            1286..1361
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /inference="alignment:Splign:2.1.0"
     exon            1362..1507
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /inference="alignment:Splign:2.1.0"
     exon            1508..1586
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /inference="alignment:Splign:2.1.0"
     exon            1587..1647
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /inference="alignment:Splign:2.1.0"
     exon            1648..1720
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /inference="alignment:Splign:2.1.0"
     exon            1721..2011
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1989..1994
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /note="hexamer: AATAAA"
     polyA_site      2011
                     /gene="Ccdc61"
                     /gene_synonym="C530028I08Rik; Gm159"
                     /note="major polyA site"
ORIGIN      
        1 ggagctgaaa cttcggcggt tgaaccgctc gtgaagatcg agtccgtgga ggtgaagagc
       61 gagtacgcgg gtgtgggcgc gggctccagg cgcgggctgc aggcgcgggc agtggggagt
      121 ccccagagca ccgattcttt cacgcaggtg gacgccagaa cctatgcaag ctggagattt
      181 cacggggtct ttaatgcatc atgttgtcgc tcgcgagata cgcggctaga acttagagaa
      241 cccttaccga atactgcact agagcttgta aggaccctgg ccatggacca gcccgctggc
      301 ctgcaggtgg actacatctt ccggggtgtg gagcacgctg tgcgggttgt ggtttctggg
      361 caggtgctgg agctggaggt ggaggaccgg atgacagctg accagtggcg tggagagttt
      421 gatgccaact tcattgaaga cttgactcat aagacgggga actttaaaca gttcagcatt
      481 ttctgtaaca tgctggagtc ggccctcacc cagagcagtg agtctgtcac cctggacctg
      541 ctcacctaca cagacctgga gtctctgcgc agccgcaagc tgggaggccg cccaggtgcc
      601 ttggccccca ggtcggccca gctcaactcc aaacgctacc tcattctcat ctattcggtg
      661 gagtttgaca ggattcacta cccgctgccc ctcccgtacc agggcaagcc tgaccctgtg
      721 gtcctgcagg gcatcatccg ctcactgaag gaggagttgg gtcatcttcg agggctgaat
      781 ggcggccagg atgctcggga gacggagatc tggcacctga gggagcaggt gacccgcttg
      841 acgtctgaga agcgggagct ggaggcacag ctgggccgct cccgagagga ggctctggcg
      901 gggcgggcag cacgccagga ggccgagtcg ttgcgtgggc tggtgagggg cctagagctg
      961 gagttacggc aggagcgtgg cctcgggggt cgggctgctg gccgccgcag ccaggatagt
     1021 cgccgactgg ctaaggagct cgaggaggtg aaggcatcgg agcgcaatct gcgtgcaagg
     1081 ctcaagacac tgaacagcga gctggccatg tacagaaggg ggagacgcac cttgccgccg
     1141 gttgcagtca gggagggccg agcctcatcg tctcgggagc gctccacgtc ccgtggtcgc
     1201 gcggtcactc gctcctcatc acgggagagc agccgtgggg cccggggtcg tggccggcca
     1261 gcacacccct cgccctcacc cacaggtagt cgtgcgcccc gttttgaccc cacagccttt
     1321 gtgaaagcca aggagaagaa gcagagagaa atcaggatga agcagcagca gcagcagcgg
     1381 aaccgaatgg gcagtggagg aagcggagac ggtccgtccg tctcatggtc tcagcagact
     1441 cggcccgctg ctgctgtgac gggccgaggg gacgcagtta accgctcccg gaaccgcagc
     1501 tcctcagtgg acagtttccg cagccgctgc tcgtcagtca gctcctgcag cgagctggag
     1561 gatttctccc actcagtttc cagaagtcgc cgctgccgtg gccgagggaa accacccagt
     1621 ccgacaccct ggagcaggtc caagacgaag tctaccactc aagaacgcag tgatcaccag
     1681 agacacttgg ccagttctgg gggctgggtc cctattaaag agtacagctc cgacttccag
     1741 ggagctgaca tggctgaaat agatgcccgc ctgaaggctt tgcaggaata catgaaccgg
     1801 ctggacacgc ggtcatgatc ctggagaggt ggtattctga tttctcattg taccatcagt
     1861 gggtctggtg tggaggcagc gcccctcccg tgctcatcgc caggtgctcc tggagtctca
     1921 gtgtgtgagg ccctgactcc cacctctccc agtaattcat tctaggagaa gagagtgtgt
     1981 attttgtaaa taaatatggt tgttcttggg a
//
