LOCUS       NM_177759               2582 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Mus musculus coiled-coil domain containing 60 (Ccdc60), transcript
            variant 1, mRNA.
ACCESSION   NM_177759
VERSION     NM_177759.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2582)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK082047.1.
            
            On Apr 5, 2007 this sequence version replaced NM_177759.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK082047.1, SRR1660813.74301.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2582              AK082047.1         2-2583
FEATURES             Location/Qualifiers
     source          1..2582
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 56.12 cM"
     gene            1..2582
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /note="coiled-coil domain containing 60"
                     /db_xref="GeneID:269693"
                     /db_xref="MGI:MGI:2141043"
     exon            1..539
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /inference="alignment:Splign:2.1.0"
     CDS             450..2087
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /note="isoform 1 is encoded by transcript variant 1;
                     coiled-coil domain-containing protein 60"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 60 isoform
                     1"
                     /protein_id="NP_808427.1"
                     /db_xref="CCDS:CCDS19599.1"
                     /db_xref="GeneID:269693"
                     /db_xref="MGI:MGI:2141043"
                     /translation="MTKVPATKKLQKITSKKALWLFSSADQLTQQASDKTAKNSKYID
                     KEIANLKKDLMRSRFLIQCVKIGRGYFNILREENAMKKKQQLLQKLKEEELNKFQPAK
                     KFSDIHCRDNLLATYDCEKLKKLEAGIIIRPFTPIHSCLMAPSLPESHVDPLFRQLCA
                     LHWLLEALTIDHTHHTMRPLIACWNPKDPGGSKSTIKKINKDKSMGQRWDHFVTAPKT
                     KKYKAPAIRTAMASRKPSRRGSTLSLTRTSGGSSPQSSMMSVNPGSDEPMGSKDIEDN
                     ESSSTKPEEEILHLYLQKLLEMVREDARRTILVESEIQKKAPSILSLVKQIKSEYGWK
                     EWQTTHKSSERSSTTSAESHIQVIQKKSKSRVNRDIIYCKTGVCSNMRAKFFSVAQEA
                     GFCLQDKMEILRKRQEERGLQKFHSFIVTSNFQKDITKMRHQVSIVKGDAEEIADHWY
                     FDLLSKLPEDLKSFRPAKKILMKLQKFGENLDLRIRPHVLLKVLQDLRIWELCSPDIA
                     VAIEFVREHIIHMPQEDYINWLQSRVNIPFRQRTILT"
     exon            540..622
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /inference="alignment:Splign:2.1.0"
     exon            623..793
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /inference="alignment:Splign:2.1.0"
     exon            794..901
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /inference="alignment:Splign:2.1.0"
     exon            902..1009
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /inference="alignment:Splign:2.1.0"
     exon            1010..1100
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /inference="alignment:Splign:2.1.0"
     exon            1101..1320
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /inference="alignment:Splign:2.1.0"
     exon            1321..1405
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /inference="alignment:Splign:2.1.0"
     exon            1406..1477
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /inference="alignment:Splign:2.1.0"
     exon            1478..1540
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /inference="alignment:Splign:2.1.0"
     exon            1541..1663
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /inference="alignment:Splign:2.1.0"
     exon            1664..1795
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /inference="alignment:Splign:2.1.0"
     exon            1796..1985
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /inference="alignment:Splign:2.1.0"
     exon            1986..2582
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2361..2366
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /note="hexamer: AATAAA"
     polyA_site      2399
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /note="major polyA site"
     regulatory      2558..2563
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
                     /note="hexamer: AATAAA"
     polyA_site      2579
                     /gene="Ccdc60"
                     /gene_synonym="C130098D09"
ORIGIN      
        1 aagccccaag gccgagcccc atggtggggc ccgccttact ccctcgtctc gctggccgag
       61 ggtggggctt ttgtctatag agttttattt ttactttttt cagtttacat tttattttgc
      121 ttataggaga aaaatatctt ctcccttaaa agagagaaaa cgtataaaac cgactttgtg
      181 caagttaaac agtctcaggt ttgcctgctc gggcctagca aaggcttcct tacccagatg
      241 ctccgctttg caacaagaaa tctcttcgca gtctctggac ttgggacttg ggggcctggg
      301 agaactttct ggaccgtttc acaccagtga gtgttgcgaa gtcaagaatc tgaaaaagca
      361 acaagttttt cactggaggc acgggcttaa aggctgaagg ttgttttgtt gttgttagtg
      421 gtggtggttt tttgtatttt tttttcaaga tgaccaaagt gccagccacc aaaaagttac
      481 aaaaaatcac cagcaagaag gccctttggc tcttttccag cgcagatcaa ctgactcagc
      541 aggcctcaga caagacagcg aagaactcca aatatataga caaggagata gcaaacctta
      601 agaaggatct tatgcgaagc cgcttcctga tccagtgtgt gaagataggc cgaggctact
      661 tcaacatcct gcgagaggaa aatgccatga aaaagaagca gcagctactc cagaagctga
      721 aggaggagga gctaaacaag ttccagccgg ccaagaagtt ctcagatatc cactgcaggg
      781 acaacctgct ggctacctac gactgtgaga agctaaagaa gttggaggcc gggatcatca
      841 tccgcccgtt cacgcccatc cacagctgtc tcatggcgcc ctccctgcct gagtctcacg
      901 tggatccgct cttccgccag ctgtgtgctc tccactggct cctagaggcc ctgaccatcg
      961 accacaccca ccacaccatg aggcccttga ttgcctgttg gaaccccaag gacccaggtg
     1021 gcagcaagag cacaataaag aagattaaca aggacaagtc catggggcag aggtgggatc
     1081 acttcgtcac ggcacccaag accaagaaat acaaagctcc cgccatccgc acagccatgg
     1141 ccagccgcaa gcccagcaga cgaggctcta ccctcagcct gactcggacc agtgggggct
     1201 cttctcccca gagcagtatg atgtcagtga accccggctc cgatgagccc atgggcagca
     1261 aagacatcga agacaatgag tcctcctcca ctaagccaga agaggaaatc ctccacctct
     1321 acttgcagaa gctgctggag atggtccggg aagacgcccg aagaaccatc ttggtggaga
     1381 gcgagataca gaagaaagcc cccagcatcc tgtctttagt caagcaaatc aagagtgagt
     1441 atggatggaa ggagtggcag accacacaca aatccagcga gcggtccagc actacaagcg
     1501 cagagagcca catccaggtg atccagaaga agtcgaagag cagagttaac cgtgacatca
     1561 tctattgcaa gaccggggtg tgtagcaaca tgcgggccaa gtttttcagc gtagcccagg
     1621 aggccggctt ctgcctgcag gacaagatgg aaatcctcag gaagcgccag gaggagcgag
     1681 gactccagaa gttccactcc ttcattgtca cctcgaactt ccagaaggac ataacaaaga
     1741 tgaggcacca ggtctccata gtgaaagggg acgcagagga gattgccgac cactggtact
     1801 tcgatctgct gtccaaactc cctgaggatc tgaagagctt ccggcctgcc aaaaagatcc
     1861 tgatgaagct gcagaagttt ggagagaacc tggacctgag gatccggccc cacgtcctcc
     1921 tgaaggtgct ccaggacctg cggatctggg agctgtgttc cccggacatt gcagtggcca
     1981 ttgagtttgt gagagaacac attattcata tgccccagga agactacatc aactggctac
     2041 agagccgagt caacattccc ttccggcagc gcaccatcct gacatagagg ggcccagtcc
     2101 ccgtggagga aagcaagcca gcaccacatc cctaagccca gcctgtgccc gtagcctcct
     2161 ctcttctctc ctggacacac ggcatggagc agtgagatca gctgaagaca cttctaacaa
     2221 tatgactgtc tggagagggt ggtcccaggt ggccctcccc tcccccacca ggctccctac
     2281 ctccgctcac tgtccaatgt ggactcttgt tttctctccc agactcttgt caccattccc
     2341 cttccccgaa agccctggat aataaatcta acctggatgt ttgacatctt cccaaggaag
     2401 aattcaaggt gtggcatttg ggtgcggcaa tcagatctta ggagaacaag ctatcatttg
     2461 tgagcttttg taaattcgac aacctagtgc catgtgtttt gcctgcgtaa tgtaattatt
     2521 tatattggca tatgacattc ctgagtacat acagatgaat aaatgaatgg ataaagagat
     2581 gg
//
