LOCUS       NM_025602               1078 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus coiled-coil domain containing 59 (Ccdc59), mRNA.
ACCESSION   NM_025602
VERSION     NM_025602.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1078)
  AUTHORS   Gineste,C., De Winter,J.M., Kohl,C., Witt,C.C., Giannesini,B.,
            Brohm,K., Le Fur,Y., Gretz,N., Vilmen,C., Pecchi,E., Jubeau,M.,
            Cozzone,P.J., Stienen,G.J., Granzier,H., Labeit,S.,
            Ottenheijm,C.A., Bendahan,D. and Gondin,J.
  TITLE     In vivo and in vitro investigations of heterozygous nebulin
            knock-out mice disclose a mild skeletal muscle phenotype
  JOURNAL   Neuromuscul Disord 23 (4), 357-369 (2013)
   PUBMED   23375831
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC132471.4.
            
            On Apr 29, 2007 this sequence version replaced NM_025602.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK019970.1, AK135550.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-177               AC132471.4         11896-12072
            178-484             AC132471.4         12959-13265
            485-584             AC132471.4         15767-15866
            585-1078            AC132471.4         17434-17927
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 55.12 cM"
     gene            1..1078
                     /gene="Ccdc59"
                     /gene_synonym="2300004H16Rik; D10Ertd718e"
                     /note="coiled-coil domain containing 59"
                     /db_xref="GeneID:52713"
                     /db_xref="MGI:MGI:1289302"
     exon            1..177
                     /gene="Ccdc59"
                     /gene_synonym="2300004H16Rik; D10Ertd718e"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..746
                     /gene="Ccdc59"
                     /gene_synonym="2300004H16Rik; D10Ertd718e"
                     /note="TTF-1-associated protein 26; coiled-coil
                     domain-containing protein 59"
                     /codon_start=1
                     /product="thyroid transcription factor 1-associated
                     protein 26"
                     /protein_id="NP_079878.1"
                     /db_xref="CCDS:CCDS24158.1"
                     /db_xref="GeneID:52713"
                     /db_xref="MGI:MGI:1289302"
                     /translation="MAPSRPSSKWRTGGFAARGEGISQVRFGNQNGKRRTWRPNPQQA
                     FRGSVRKGQGFAFRRKLKIQQNYKKLLWKVKEAPASQESQFTDRYPEHLKHLYLAEEE
                     RLRKQQRKAGLALSEEQVDRPLPEEEGSTEQTSSEEPPGGHQPQPEELNTGSSVTFPK
                     NKKKKTSNQKAQEEYERVQAKRAAKKFEFEMRKQEREEAQRLYKKKKMEAFKILSKKT
                     KKGQPNLNLQMEYLLQKIQENS"
     exon            178..484
                     /gene="Ccdc59"
                     /gene_synonym="2300004H16Rik; D10Ertd718e"
                     /inference="alignment:Splign:2.1.0"
     exon            485..584
                     /gene="Ccdc59"
                     /gene_synonym="2300004H16Rik; D10Ertd718e"
                     /inference="alignment:Splign:2.1.0"
     exon            585..1078
                     /gene="Ccdc59"
                     /gene_synonym="2300004H16Rik; D10Ertd718e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      824..829
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc59"
                     /gene_synonym="2300004H16Rik; D10Ertd718e"
                     /note="hexamer: AATGAA"
     polyA_site      848
                     /gene="Ccdc59"
                     /gene_synonym="2300004H16Rik; D10Ertd718e"
                     /note="major polyA site"
     regulatory      974..979
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc59"
                     /gene_synonym="2300004H16Rik; D10Ertd718e"
                     /note="hexamer: AATATA"
     polyA_site      994
                     /gene="Ccdc59"
                     /gene_synonym="2300004H16Rik; D10Ertd718e"
                     /note="major polyA site"
     regulatory      1054..1059
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc59"
                     /gene_synonym="2300004H16Rik; D10Ertd718e"
                     /note="hexamer: ATTAAA"
     polyA_site      1078
                     /gene="Ccdc59"
                     /gene_synonym="2300004H16Rik; D10Ertd718e"
ORIGIN      
        1 aggaactccc accgtggaaa aagatggcgc cttcgcggcc gtcttccaag tggcggaccg
       61 gagggtttgc ggcgcgtggg gaagggatct ctcaggtcag attcggaaac cagaatggga
      121 agcgcaggac ttggcggccg aacccccagc aagccttccg ggggagcgtg cgcaagggac
      181 aaggttttgc atttcggaga aaactgaaga tccagcaaaa ttacaagaaa ttgctgtgga
      241 aggtgaagga ggcaccagcg tcacaggagt cccagttcac agatcgttac ccagagcacc
      301 tgaaacacct ctatctggcc gaagaggaaa gactcagaaa acagcaaaga aaggctggcc
      361 tggctttgtc agaagaacag gttgaccggc ctttgcctga agaggagggc agcactgagc
      421 agacttcctc tgaagaaccg ccaggtggtc accagccaca gccagaagag ctgaacacag
      481 gaagttctgt gacttttcca aagaataaga aaaagaaaac ttcaaaccag aaggcacaag
      541 aagagtatga acgagtacaa gcgaagcgtg ctgctaagaa atttgaattt gaaatgagaa
      601 agcaagagag agaagaggct caaaggctct acaaaaagaa aaaaatggaa gctttcaaaa
      661 tactgagcaa aaagactaaa aagggccagc ctaacctgaa tttacagatg gagtatcttc
      721 tgcagaaaat acaagaaaac agttaaagcg gacactttgt ctctaaggac tgaatcctga
      781 ctgactgtcg catccttttg tatgtgtatg ggaacctcct aataatgaac tcaatttgtt
      841 ggcatcaagt ggattgttaa attatttttg gtttttgtga aagaaaattt tgtatatata
      901 ttctccaccc ccccccccaa aaaaaaagac tttatcctga agatctttaa aaacttcagt
      961 ggaatttata tgaaatatac tgctttgaaa taggtctgag ctcacagtga gatattttca
     1021 gtgaagtgaa catgtttcac ttggttacta gaaattaaac ttaggtctgt gcactggc
//
