LOCUS       NM_027745               3395 bp    mRNA    linear   ROD 17-DEC-2024
DEFINITION  Mus musculus coiled-coil domain containing 57 (Ccdc57), transcript
            variant 1, mRNA.
ACCESSION   NM_027745 XM_126681
VERSION     NM_027745.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3395)
  AUTHORS   Pan,X., Fang,C., Shen,C., Li,X., Xie,L., Li,L., Huang,S., Yan,X.
            and Zhu,X.
  TITLE     Directional ciliary beats across epithelia require Ccdc57-mediated
            coupling between axonemal orientation and basal body polarity
  JOURNAL   Nat Commun 15 (1), 10249 (2024)
   PUBMED   39592607
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3395)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 3395)
  AUTHORS   Gurkaslar,H.K., Culfa,E., Arslanhan,M.D., Lince-Faria,M. and
            Firat-Karalar,E.N.
  TITLE     CCDC57 Cooperates with Microtubules and Microcephaly Protein CEP63
            and Regulates Centriole Duplication and Mitotic Progression
  JOURNAL   Cell Rep 31 (6), 107630 (2020)
   PUBMED   32402286
REFERENCE   4  (bases 1 to 3395)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3395)
  AUTHORS   Lin,Q., Donahue,S.L., Moore-Jarrett,T., Cao,S., Osipovich,A.B. and
            Ruley,H.E.
  TITLE     Mutagenesis of diploid mammalian genes by gene entrapment
  JOURNAL   Nucleic Acids Res 34 (20), e139 (2006)
   PUBMED   17062627
REFERENCE   6  (bases 1 to 3395)
  AUTHORS   Osipovich,A.B., Singh,A. and Ruley,H.E.
  TITLE     Post-entrapment genome engineering: first exon size does not affect
            the expression of fusion transcripts generated by gene entrapment
  JOURNAL   Genome Res 15 (3), 428-435 (2005)
   PUBMED   15741512
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL662901.18 and AL663090.15.
            
            On Mar 14, 2023 this sequence version replaced NM_027745.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC056480.1, SRR13422590.306375.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-149               AL662901.18        14621-14769         c
            150-564             AL662901.18        3425-3839           c
            565-673             AL663090.15        165202-165310       c
            674-775             AL663090.15        149713-149814       c
            776-933             AL663090.15        149252-149409       c
            934-1008            AL663090.15        149045-149119       c
            1009-1209           AL663090.15        147604-147804       c
            1210-1368           AL663090.15        143538-143696       c
            1369-1531           AL663090.15        140986-141148       c
            1532-1666           AL663090.15        140328-140462       c
            1667-1880           AL663090.15        131579-131792       c
            1881-2033           AL663090.15        130962-131114       c
            2034-2134           AL663090.15        127544-127644       c
            2135-2305           AL663090.15        124607-124777       c
            2306-2519           AL663090.15        119315-119528       c
            2520-2641           AL663090.15        112284-112405       c
            2642-2773           AL663090.15        106867-106998       c
            2774-2999           AL663090.15        106130-106355       c
            3000-3395           AL663090.15        72258-72653         c
FEATURES             Location/Qualifiers
     source          1..3395
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 84.59 cM"
     gene            1..3395
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /note="coiled-coil domain containing 57"
                     /db_xref="GeneID:71276"
                     /db_xref="MGI:MGI:1918526"
     exon            1..149
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            150..564
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            565..673
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            674..775
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            776..933
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            934..1008
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1009..1209
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1210..1368
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1369..1531
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1532..1666
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1667..1880
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1881..2033
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2034..2134
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2135..2305
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2306..2519
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2520..2641
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2642..2773
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2774..2999
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3000..3395
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3363..3368
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      3395
                     /gene="Ccdc57"
                     /gene_synonym="4933434G05Rik"
                     /note="major polyA site"
ORIGIN      
        1 agtcgctatg gtaacgtggc ccgcgctgta ggttcgggcg ggagagtgct ggcgctcgga
       61 atcctggaga cccgggtccc agctggcgca gctctaggtc gcacgcggga gacgaagcta
      121 attccgctgg gaccgtcctg gcacacgcgc catcaccatg ctgccgctat gttcagagcg
      181 ggaactgaat gagcttttgg ctcgaaagga ggaggaatgg cgagtcctcc aggcccaccg
      241 tgcgcagctg caggaggcag ctctacaggc tgctcagaac cgcctggagg agacacaggg
      301 gaagctgcaa cgcctacagg aggactttgt ttacaacctt caggtgctgg aagagcggga
      361 ccgggagctg gagcgctatg atgttgagtt cacccaggcc cgccagcggg aggaggccca
      421 acaagcagag gccagtgagc tcaagataga ggtggccaag ctgaaacaag acctcaccag
      481 ggaggccagg cgagtggggg agctgcagca tcagcatcag ctaatgctgc aggagcatcg
      541 cttggagttg gagcgcgtcc acagtgacaa gaacagcgaa ctggcccacc agcgggaaca
      601 gaatgagcgc ctggagtggg aactggagcg aaaactgaag gaactcgatg gtgaacttgc
      661 tctgcagaga caggagctgc tgctggagtt tgaatctaaa atgcagagaa gagagcatga
      721 gttccagctg agggctgacg acatgagcaa cgtagtcctg acacatgagc tcaagataaa
      781 actactaaac aaagagctgc aagctctgag agacgctgga gcacgggcag cagagagtct
      841 gcagaaggca gaagcagaac acgtggaatt agagaggaag ctgcaggagc gtgcccggga
      901 actccaggat ctggaggccg tgaaggacgc tcggataaag ggcttggaga agaagcttta
      961 ctcggcacag ctggccaaga agaaagctga ggagactttc aggaggaaac atgaagagct
     1021 tgaccgtcaa gccagggaga aagacacagt gctggcggca gtgaagcgcg cccatgcaga
     1081 ggagctgcag acgctggacg ccaaggtgct ggagcttcag ttcctctgtg aaaccctgga
     1141 gggacaactg cgcagggctg agtgcacaag agcagaggac gccaaggaga agaacgccct
     1201 tactgacaaa tttcgtgaag atgcggcagc tctgaaagct gcctgggacg cccagatcac
     1261 gcagatgtcc aaggagactg tctccaaaga ctttcagatt cacacgctgc aggaagaaga
     1321 gatgaagctc aaggcacagg tggccagatt ccaacaggac atagacaggt acaagcagca
     1381 gctgtccctg gcagtggaga ggggacagag cctggagcgt gaacaggtac agctaggcct
     1441 tgactggcag cgtcgctgcg atgatattga acgagaccag atccagaaat cggagacttt
     1501 gatcgaaggg ctgaccaagg ccagggatca ggtcgctgct aaactccagg agacagagaa
     1561 ggcactgcgt cagcaggaga ctctgctgaa ggctgtgtca ctggagcgag accaagctat
     1621 ggaaacccta cgtacacatg ggctccttcc tggacaggag gcacaggtac ctcctcagca
     1681 gcatgaagga gaaataaggg cagattctcc atctactgag atccagaggc tacaggaaca
     1741 gaatgcaggt ctgcggaacg ctgtttcaca gatgaggaga gagatggaga tgctgagcgg
     1801 tcatctcccc cctgcccagc cagaagagtg ttcaaatgca gaccctgatc ccaaggctgg
     1861 aggagactcc acccctccag attatgttct gacccttgaa gcagaaatgc aaaatctaaa
     1921 gcataaactt aaggcattgg aggaacaact acaaagcaca gaagagccag tgaagacgtc
     1981 cgtggccact gctgatccac accatggtgt ccacagctct gcagcagcag ctgacgcagc
     2041 tctggcagac cagacatcca ctgcattagc actcagaaaa cttggagaca gagtgcacct
     2101 cttgaacttg ctggtgacac agctcaaaag gaagctgcgg cagaagcccc gggagctggt
     2161 ccctgtccaa cacgaggtcc ccagtgaggt ggaccaggtg cacctggagg ttttggagct
     2221 gcagaagcag gtggctgagt taaggaagca tctcaaggtg acaccccagg gagagccttc
     2281 atccagggag cagttacaga gacagggtgt ggcagaccgg taccccatgg gcatggaaga
     2341 ccagacggag tcccctactt tcccccagga aggggcacag cctccacaga ccatatatgt
     2401 gacccatctg caaaggaaat taaaggatgc agctaggaaa atactcagcc tccgcctaga
     2461 gagggaacag ctcctagaaa tgggaaatag actccgagct gagcaaggcc acgcaaaagg
     2521 gaaaccaact ccttgcccag gtcctcccac ctctgaaccc caggaccccc aggaggtgcc
     2581 tgagagatct ttggaccgtg gcccaccttt gggacaattg cagccctact caacaactca
     2641 ggaccccagg cacaccaaga gaagatgtgc ttctgagtat gcagggaaga gtcaacccca
     2701 ctcagcacaa gtgggcagca aaaccaacac cccacgaggc cacaaggcag aaatggcgtc
     2761 aaggcctgct cagctctcac agaagcagca cagaatcccc acagagactt ggaagccagt
     2821 ttatcagaaa gaaaacagga ccccaaagct accacaggct catgaagtcc ctgaagaaag
     2881 tgaccaccgt acccacagat cgtcttcatt ggccagcagt tccctccaag acatctggag
     2941 gctgctagag ctgggatcca gcccttcggg cgtcccctca caggataact ctgttgcaga
     3001 gtgtccagca ccttcaagac ccagctgttt ccaaaaggtc aaccggagcc ctgtccccat
     3061 acaaaaggcc tttgctgtca aagggctaaa gatggaagct cagccaaaag ccacaccccc
     3121 cagacccagc aagtctcacc cagctaaacc tacaaactgc cagcagcagc ggccctctag
     3181 gatccgcaac tacaacctca aggactaagt ctcagcctcc tgcaggagac tgcacagggg
     3241 ctccaccttg tacgtggggc ctgtggttat acaagttggg agtgagaata cacatggtat
     3301 acaggtgggt tgtgagcaca ggacagcatc ccaaatgatg gcctttctga tgctaaagag
     3361 caattaaagc ctcctccatc tgtttggcct gtgaa
//
