LOCUS       NM_027046               1296 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 54 (Ccdc54), mRNA.
ACCESSION   NM_027046 XM_001002867
VERSION     NM_027046.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1296)
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 1296)
  AUTHORS   Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
            Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
            Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
            Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
            Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
            Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
            Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
            Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
            di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
            Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
            Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
            Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
            Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
            Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
            Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
            Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
            Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
            Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
            Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
            Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
            Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
            Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
            Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
            Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
            Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
            Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
            Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
            Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
            Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
            Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
            Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
            Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
            Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
            Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
            Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
            Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
            Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC138306.4.
            
            On Aug 22, 2018 this sequence version replaced NM_027046.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC049741.1, AK005741.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1296              AC138306.4         83533-84828
FEATURES             Location/Qualifiers
     source          1..1296
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 31.5 cM"
     gene            1..1296
                     /gene="Ccdc54"
                     /gene_synonym="1700007N18Rik; NYD-SP17"
                     /note="coiled-coil domain containing 54"
                     /db_xref="GeneID:69339"
                     /db_xref="MGI:MGI:1916589"
     exon            1..1296
                     /gene="Ccdc54"
                     /gene_synonym="1700007N18Rik; NYD-SP17"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1271..1276
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc54"
                     /gene_synonym="1700007N18Rik; NYD-SP17"
                     /note="hexamer: AATAAA"
     polyA_site      1295
                     /gene="Ccdc54"
                     /gene_synonym="1700007N18Rik; NYD-SP17"
                     /note="major polyA site"
ORIGIN      
        1 aatcagatga ggatcacagg aatggtcaca tgcagtagac agttaaaaca caaagctctg
       61 aagttaggct gcttggaaga agtaagccac ctaacctgcc tgacgctgcc tttgatgttc
      121 tccacaggta ttcaatgatg tgaccaggaa agaactccag tacataggaa gagaaaagcc
      181 ataacctcgc aaaaatcgct tcttccgatg tcatgtgtct cagcactttg ggtcttatgt
      241 ctcagtgaaa aacatgtaca gatttcacac caaaagagta agagctgccg ctggccaggt
      301 gtggactgca aacctccaca agatcagaag atctcttaaa aatgtttacc agaaatgtac
      361 gacccaccac tcatattcaa ctagctaccc aacaagggct tcttacggtt gcgacggaga
      421 tactctcagt ttgaatgaag acatgaatct accagcaatg ctccaagaca ttaaaacggg
      481 acaaacggaa ctcctcaacc aaatgacgaa cattgtcagt tcaatatcaa atatccagga
      541 aaagatcaac cattatcaga atcagatgga agccctggaa gccagaataa acattagtga
      601 agacagacag actgcaacca ccaaagacat gctctccatg aaagaagata tcaacactct
      661 aaagaagaag gtgacggagc tggaaagcca gaattcttac tccagcattc attgtctaga
      721 ggtcttggaa ggacaaaggg gtaaagaatt tgtacagctc ctccataaac tcctacaaac
      781 tgaaacccca aagggcacag ccacctctcc agacactgtc atctcatcag cagagccaga
      841 gagagtgtcc agttacccag agcccactgg tgagcttaag aaaaaaacaa cgtcacctca
      901 gaatataact ctgaagaaaa ataatagcct ccaaaatgca tcagtgggtt gcaaaaaggt
      961 aaggtcaaat atttatattt accctgactt cagtacatgg atcaagctca cttttgttca
     1021 tggaggaaat tggagatttt tcctcagtgc caccaagtta gaggaattca tccagtggct
     1081 tctgtctagg tccaccatcc ttcctgagga accacaaatc ataccccaga gagactacgc
     1141 cttcaccgga gccattggga ggttggccac aatctgtctc tctctcttcc actatgttta
     1201 ttgccttttc ggttcctcaa aagaggaaat aactcgactt tagagttatt tcctgcttgg
     1261 cttgggacaa aataaatgta gcccgtttgc ttcgag
//
